Opened 12 years ago
Closed 12 years ago
#7272 closed defect (fixed)
Upgrade to Cython 0.12
Reported by: | robertwb | Owned by: | mabshoff |
---|---|---|---|
Priority: | major | Milestone: | sage-4.3 |
Component: | packages: standard | Keywords: | |
Cc: | Merged in: | sage-4.3.rc0 | |
Authors: | Robert Bradshaw | Reviewers: | Mike Hansen |
Report Upstream: | N/A | Work issues: | |
Branch: | Commit: | ||
Dependencies: | Stopgaps: |
Description
Cython 0.12 isn't released yet, but should be shortly, and this ticket is about getting Sage to compile and pass all tests.
Spkg at http://sage.math.washington.edu/home/robertwb/cython/cython-0.12.spkg
Also depends on patch at #7023 (to be applied before the attached patch).
Attachments (1)
Change History (13)
comment:1 Changed 12 years ago by
- Status changed from new to needs_work
comment:2 Changed 12 years ago by
I've gotten everything working but
sage -t "sage/modular/modsym/ambient.py" sage -t "sage/modular/modsym/heilbronn.pyx"
with
sage -t "devel/sage-cython2/sage/modular/modsym/heilbronn.pyx" python(96760) malloc: *** mmap(size=1744830464) failed (error code=12) *** error: can't allocate region *** set a breakpoint in malloc_error_break to debug ********************************************************************** File "/Users/robertwb/sage/sage-4.0/devel/sage-cython2/sage/modular/modsym/heilbronn.pyx", line 839: sage: sage.modular.modsym.heilbronn.hecke_images_gamma0_weight_k(4,1,3,15,6,[1,11,12], R) Exception raised: Traceback (most recent call last): File "/Users/robertwb/sage/sage-4.0/local/bin/ncadoctest.py", line 1231, in run_one_test self.run_one_example(test, example, filename, compileflags) File "/Users/robertwb/sage/sage-4.0/local/bin/sagedoctest.py", line 38, in run_one_example OrigDocTestRunner.run_one_example(self, test, example, filename, compileflags) File "/Users/robertwb/sage/sage-4.0/local/bin/ncadoctest.py", line 1172, in run_one_example compileflags, 1) in test.globs File "<doctest __main__.example_17[4]>", line 1, in <module> sage.modular.modsym.heilbronn.hecke_images_gamma0_weight_k(Integer(4),Integer(1),Integer(3),Integer(15),Integer(6),[Integer(1),Integer(11),Integer(12)], R)###line 839: sage: sage.modular.modsym.heilbronn.hecke_images_gamma0_weight_k(4,1,3,15,6,[1,11,12], R) File "heilbronn.pyx", line 877, in sage.modular.modsym.heilbronn.hecke_images_gamma0_weight_k (sage/modular/modsym/heilbronn.c:7652) File "heilbronn.pyx", line 417, in sage.modular.modsym.heilbronn.HeilbronnMerel.__init__ (sage/modular/modsym/heilbronn.c:4561) SystemError: NULL result without error in PyObject_Call ********************************************************************** 1 items had failures: 1 of 8 in __main__.example_17 ***Test Failed*** 1 failures.
comment:3 Changed 12 years ago by
Above failure due to memory corruption caused by http://trac.cython.org/cython_trac/ticket/442
Sage builds and passes all tests (vanilla 4.2 + attached patch)
Changed 12 years ago by
comment:4 Changed 12 years ago by
- Merged in set to sage-4.3.alpha0
- Resolution set to fixed
- Reviewers set to Mike Hansen
- Status changed from needs_work to closed
Looks good to me.
I went ahead and removed the src/.hg/ repo from the Cython spkg and checked in the modification to spkg-install. The new spkg can be found at http://sage.math.washington.edu/home/mhansen/cython-0.12.spkg
comment:5 Changed 12 years ago by
- Status changed from closed to needs_work
Thanks for doing this, but 0.12 isn't officially out yet. Fortunately, I just updated the spkg to the most recent release candidate a couple of days ago. I see a release happening in the next week, so the only change (that impacts us, there's two windows fixes since then) will be the version number bump (I hope).
The linked spkg should work fine, but if we release soon (before you do) I'd be nice to actually be synced with upstream.
comment:6 Changed 12 years ago by
I think 0.12 will be out before 4.3. I'll include the official 0.12 in the main release.
comment:7 Changed 12 years ago by
- Report Upstream set to N/A
It looks like 0.12 is out now. From the Cython webpage:
The latest release of Cython is 0.12 (released 2009-11-23).
Is the official release in the spkg above, or were there changes since the spkg above?
And congrats on the 0.12 release! I'm excited about the improvements in it!
comment:8 Changed 12 years ago by
I'll upload the actual spkg.
comment:9 Changed 12 years ago by
Spkg at http://sage.math.washington.edu/home/robertwb/cython/cython-0.12.spkg is the 0.12 release (minus repo).
comment:10 Changed 12 years ago by
- Status changed from needs_work to needs_review
comment:11 Changed 12 years ago by
- Status changed from needs_review to positive_review
I'm changing this to positive review, as the changes between when this was merged and the official upstream are minimal.
comment:12 Changed 12 years ago by
- Merged in changed from sage-4.3.alpha0 to sage-4.3.rc0
- Status changed from positive_review to closed
I've merged this new spkg in 4.3.rc0
I had to force cdivision=True globally as way to much stuff broke otherwise (and even if all tests passed, it's a bold move that should be taken after looking through the entire library for problems).