Opened 7 weeks ago

Last modified 4 days ago

#30539 needs_review enhancement

More Void Linux spkg's

Reported by: gh-dkwo Owned by: gh-dkwo
Priority: major Milestone: sage-9.3
Component: spkg-check Keywords:
Cc: Merged in:
Authors: Nicolo' Piazzalunga Reviewers:
Report Upstream: N/A Work issues:
Branch: u/mkoeppe/more_void_linux_spkg_s (Commits) Commit: 7a9318b865c2d0aaf7acd120d2445737028fca6e
Dependencies: #30663 Stopgaps:

Description

Add more packages to be detected in Void Linux.

Attachments (4)

more.pari (1.9 KB) - added by gh-dkwo 7 weeks ago.
pari additional packages
newvoid.log (1.6 KB) - added by gh-dkwo 5 weeks ago.
missing spkg's
void.more (1.4 KB) - added by gh-dkwo 5 weeks ago.
more void spkg
config.log (284.8 KB) - added by gh-dkwo 5 weeks ago.
config from my machine

Download all attachments as: .zip

Change History (40)

Changed 7 weeks ago by gh-dkwo

pari additional packages

comment:1 Changed 7 weeks ago by gh-dkwo

These packages have yet to be merged in void linux, I will update the ticked once they're merged.

comment:2 Changed 6 weeks ago by gh-dkwo

Packages are now in Void's repository.

comment:3 Changed 6 weeks ago by gh-dkwo

  • Owner changed from (none) to gh-dkwo

comment:4 Changed 6 weeks ago by gh-dkwo

  • Status changed from new to needs_review

comment:5 Changed 6 weeks ago by gh-dkwo

  • Status changed from needs_review to positive_review

comment:6 Changed 6 weeks ago by slelievre

  • Status changed from positive_review to needs_info

If you prepared a branch for that and pushed it to trac, please fill in the "Branch" field of the ticket.

comment:7 Changed 6 weeks ago by gh-dkwo

  • Branch set to u/gh-dkwo/more_void_linux_spkg_s

comment:8 Changed 6 weeks ago by gh-dkwo

  • Commit set to 5faac2030c853833cc2690ae924dc82e603ec750
  • Status changed from needs_info to positive_review

New commits:

5faac20added void linux spkgs for pari

comment:9 Changed 6 weeks ago by dimpase

Please enter author and reviewer real names.

comment:10 Changed 6 weeks ago by gh-dkwo

  • Authors set to Nicolo' Piazzalunga
  • Reviewers set to Nicolo' Piazzalunga

comment:11 Changed 6 weeks ago by slelievre

  • Reviewers Nicolo' Piazzalunga deleted
  • Status changed from positive_review to needs_review

Someone else than the author has to review the ticket.

comment:12 Changed 6 weeks ago by mkoeppe

This is not coming from the changes on this ticket, but I am getting:

$ tox -e docker-voidlinux-standard
...
Unable to locate 'r' in repository pool.

comment:13 Changed 6 weeks ago by gh-dkwo

The correct name is R, not r. Probably my mistake.

comment:14 Changed 6 weeks ago by mkoeppe

  • Branch changed from u/gh-dkwo/more_void_linux_spkg_s to u/mkoeppe/more_void_linux_spkg_s

comment:15 Changed 6 weeks ago by mkoeppe

  • Commit changed from 5faac2030c853833cc2690ae924dc82e603ec750 to e63f4c536d3c4ac85b2f3d37079b348745c32289

Fixed that, but it does not use it because it cannot find gfortran. Package missing?


New commits:

e63f4c5build/pkgs/r/distros/void.txt: Change to R

comment:16 Changed 6 weeks ago by gh-dkwo

On my machine I have 'libgfortran-devel', can you add that as well?

comment:17 Changed 6 weeks ago by git

  • Commit changed from e63f4c536d3c4ac85b2f3d37079b348745c32289 to d34dc7cfac8a47844aac347061ec58af1757772e

Branch pushed to git repo; I updated commit sha1. New commits:

15f5e9bbuild/pkgs/gfortran/distros/void.txt: New
d34dc7cbuild/pkgs/xz/distros/void.txt: New

comment:18 Changed 6 weeks ago by mkoeppe

There are still LOTS of packages missing...

configure: notice: the following SPKGs did not find equivalent system packages: arb boost boost_cropped brial cbc cddlib cliquer cmake coxeter3 eclib fflas_ffpack flint flintqs fplll freetype gf2x gfan givaro gp2c iml isl lcalc libatomic_ops libbraiding libffi libgd libnauty libpng libsemigroups lrcalc m4ri m4rie mpfi nauty ninja_build ntl palp pandoc pari pari_elldata pari_galdata pari_galpol pari_nftables pari_seadata pari_seadata_small perl_cpan_polymake_prereq perl_term_readline_gnu planarity python3 rw suitesparse symmetrica sympow tachyon zn_poly
checking for the package system in use... void
configure: hint: installing the following system packages is recommended and may avoid building some of the above SPKGs from source:
configure:   $ sudo xbps-install boost-devel flint freetype harfbuzz glib imlib2-devel isl15-devel pari pari-devel pari-elldata pari-galdata pari-galpol pari-seadata pari-elldata pari-galdata pari-galpol pari-seadata python3 python3-devel rw
configure: After installation, re-run configure using:
configure:   $ ./config.status --recheck && ./config.status

Changed 5 weeks ago by gh-dkwo

missing spkg's

comment:19 Changed 5 weeks ago by gh-dkwo

Can you add the attached file to the branch? Currently, on my machine, when building beta13 I'm missing only:

arb brial cddlib cliquer coxeter3 eclib fflas_ffpack flint flintqs fplll gfan givaro gp2c iml lcalc libbraiding libgd libnauty libsemigroups lrcalc m4ri m4rie mpfi nauty ntl palp perl_cpan_polymake_prereq planarity rw suitesparse symmetrica sympow tachyon zn_poly

Can you test again on docker?

comment:20 Changed 5 weeks ago by git

  • Commit changed from d34dc7cfac8a47844aac347061ec58af1757772e to 4bdfc1c35a8e3d0bd4bd26240e7f0bdd8d39b315

Branch pushed to git repo; I updated commit sha1. New commits:

4bdfc1cadd void spkgs

comment:21 Changed 5 weeks ago by mkoeppe

configure: notice: the following SPKGs did not find equivalent system packages: arb boost boost_cropped brial cbc cddlib cliquer cmake coxeter3 eclib fflas_ffpack flint flintqs fplll freetype gf2x gfan givaro gp2c iml isl lcalc libatomic_ops libbraiding libffi libgd libnauty libpng libsemigroups lrcalc m4ri m4rie mpfi nauty ninja_build ntl palp pandoc pari pari_elldata pari_galdata pari_galpol pari_nftables pari_seadata pari_seadata_small perl_cpan_polymake_prereq perl_term_readline_gnu planarity python3 rw suitesparse symmetrica sympow tachyon zn_poly
checking for the package system in use... void
configure: hint: installing the following system packages is recommended and may avoid building some of the above SPKGs from source:
configure:   $ sudo xbps-install boost-devel cmake flint freetype harfbuzz glib imlib2-devel isl15-devel ninja pandoc pari pari-devel pari-elldata pari-galdata pari-galpol pari-seadata pari-elldata pari-galdata pari-galpol pari-seadata perl-Term-ReadLine-Gnu python3 python3-devel rw

comment:22 Changed 5 weeks ago by mkoeppe

  [giac-1.5.0.87p0]   Error building giac-1.5.0.87p0

comment:23 follow-up: Changed 5 weeks ago by gh-dkwo

I'm puzzled by python, giac, etc: all these should not be built. I forgot to add freetype-devel:

---
 build/pkgs/freetype/distros/void.txt | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/build/pkgs/freetype/distros/void.txt b/build/pkgs/freetype/distros/void.txt
index 8ca004ddd3..377935546a 100644
--- a/build/pkgs/freetype/distros/void.txt
+++ b/build/pkgs/freetype/distros/void.txt
@@ -1,3 +1,3 @@
-freetype
+freetype-devel
 harfbuzz
 glib
--
2.28.0

comment:24 Changed 5 weeks ago by mkoeppe

Here's the configure output, which explains more:

checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /usr/sbin/mkdir -p
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking whether to enable maintainer-specific portions of Makefiles... yes
checking build system type... x86_64-pc-linux-musl
checking host system type... x86_64-pc-linux-musl
checking for a sed that does not truncate output... /usr/sbin/sed
checking for ar... yes
checking for m4... yes
checking for pkg-config... /usr/sbin/pkg-config
checking pkg-config is at least version 0.9.0... yes
checking for ranlib... yes
checking for strip... yes
checking for GNU or BSD tar... /usr/sbin/tar
checking for GNU make... /usr/sbin/make
checking for Python... /usr/sbin/python
checking for latex... no
configure: You do not have 'latex', which is recommended, but not
configure: required. Latex is only really used for building pdf
configure: documents and for %latex mode in the Sage notebook.
checking for perl... /usr/sbin/perl
checking for Perl version 5.8.0 or later... yes
checking whether a conda environment is active... no
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking whether gcc understands -c and -o together... yes
checking whether make supports the include directive... yes (GNU style)
checking dependency style of gcc... none
checking how to run the C preprocessor... gcc -E
checking for g++... g++
checking whether we are using the GNU C++ compiler... yes
checking whether g++ accepts -g... yes
checking dependency style of g++... none
checking for gfortran-9... no
checking for gfortran... gfortran
checking whether we are using the GNU Fortran compiler... yes
checking whether gfortran accepts -g... yes
checking for gcc... gcc
checking whether we are using the GNU Objective C compiler... no
checking whether gcc accepts -g... no
checking dependency style of gcc... none
checking for g++... g++
checking whether we are using the GNU Objective C++ compiler... no
checking whether g++ accepts -g... no
checking dependency style of g++... none
checking how to run the C++ preprocessor... g++ -E
checking for grep that handles long lines and -e... /usr/sbin/grep
checking for egrep... /usr/sbin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking complex.h usability... yes
checking complex.h presence... yes
checking for complex.h... yes
checking for sqrt in -lm... yes
-----------------------------------------------------------------------------
Checking whether SageMath should install SPKG gcc...
checking for C compiler vendor... gnu
checking whether g++ supports C++11 features with -std=gnu++11... yes
checking for gcc option to accept ISO C99... none needed
checking if gcc accepts -dumpversion option... yes
checking gcc version... 9.3.0
checking if g++ accepts -dumpversion option... yes
checking g++ version... 9.3.0
configure: will use system package and not install SPKG gcc
checking for the location of crti.o... /usr/lib/gcc/x86_64-linux-musl/9.3.0/../../../../lib
-----------------------------------------------------------------------------
Checking whether SageMath should install SPKG mpir...
checking gmp.h usability... yes
checking gmp.h presence... yes
checking for gmp.h... yes
checking gmpxx.h usability... yes
checking gmpxx.h presence... yes
checking for gmpxx.h... yes
checking for library containing __gmpq_cmp_z... -lgmp
configure: will use system package and not install SPKG mpir
checking absolute name of <gmp.h>... checking for gmp.h... (cached) yes
///usr/include/gmp.h
using GMP-compatible library from the system
-----------------------------------------------------------------------------
Checking whether SageMath should install SPKG gmp...
configure: will use system package and not install SPKG gmp
-----------------------------------------------------------------------------
Checking whether SageMath should install SPKG mpfr...
checking installing gmp/mpir? ... no
checking mpfr.h usability... yes
checking mpfr.h presence... yes
checking for mpfr.h... yes
checking for library containing mpfr_free_pool... -lmpfr
configure: will use system package and not install SPKG mpfr
using mpfr library from the system
-----------------------------------------------------------------------------
Checking whether SageMath should install SPKG ntl...
checking installing gmp/mpir? ... no
checking NTL/ZZ.h usability... no
checking NTL/ZZ.h presence... no
checking for NTL/ZZ.h... no
checking whether we can link a program using NTL... no
checking NTL version >= 10.3... no
configure: no suitable system package found for SPKG ntl
-----------------------------------------------------------------------------
Checking whether SageMath should install SPKG flint...
checking installing mpfr or ntl? ... yes; install flint as well
configure: no suitable system package found for SPKG flint
using Sage's flint SPKG
-----------------------------------------------------------------------------
Checking whether SageMath should install SPKG arb...
checking installing flint? ... yes; install arb as well
configure: no suitable system package found for SPKG arb
checking for Fortran flag needed to accept free-form source... -ffree-form
-----------------------------------------------------------------------------
Checking whether SageMath should install SPKG gfortran...
checking the version of gfortran... 9.3.0
configure: will use system package and not install SPKG gfortran
-----------------------------------------------------------------------------
Checking whether SageMath should install SPKG openblas...
checking BLAS library... openblas
checking whether any of gfortran is installed as or will be installed as SPKG... no
checking for openblas >= 0.2.20... yes
checking for cblas_dgemm... yes
checking for dgeqrf... no
checking for dgeqrf_... yes
checking for DGEQRF... no
checking for DGEQRF_... no
configure: will use system package and not install SPKG openblas
-----------------------------------------------------------------------------
Checking whether SageMath should install SPKG atlas...
configure: SPKG atlas is not required on this system
-----------------------------------------------------------------------------
Checking whether SageMath should install SPKG boost_cropped...
checking for boostlib >= 1.66.0 (106600)... configure: We could not detect the boost libraries (version 1.66.0 or higher). If you have a staged boost library (still not installed) please specify $BOOST_ROOT in your environment and do not give a PATH to --with-boost option.  If you are sure you have boost installed, then check your version number looking in <boost/version.hpp>. See http://randspringer.de/boost for more documentation.
configure: no suitable system package found for SPKG boost_cropped
-----------------------------------------------------------------------------
Checking whether SageMath should install SPKG boost...
checking whether any of boost_cropped is installed as or will be installed as SPKG... yes; install boost as well
configure: no suitable system package found for SPKG boost
-----------------------------------------------------------------------------
Checking whether SageMath should install SPKG zlib...
checking for inflateEnd in -lz... yes
checking zlib.h usability... yes
checking zlib.h presence... yes
checking for zlib.h... yes
checking for libpng >= 1.2... no
checking for inflateValidate in -lz... yes
configure: will use system package and not install SPKG zlib
-----------------------------------------------------------------------------
Checking whether SageMath should install SPKG libpng...
checking installing zlib? ... no
checking for libpng >= 1.2... no
configure: no suitable system package found for SPKG libpng
-----------------------------------------------------------------------------
Checking whether SageMath should install SPKG m4ri...
checking whether any of libpng is installed as or will be installed as SPKG... yes; install m4ri as well
configure: no suitable system package found for SPKG m4ri
-----------------------------------------------------------------------------
Checking whether SageMath should install SPKG brial...
checking whether any of boost m4ri is installed as or will be installed as SPKG... yes; install brial as well
configure: no suitable system package found for SPKG brial
-----------------------------------------------------------------------------
Checking whether SageMath should install SPKG bzip2...
checking bzlib.h usability... yes
checking bzlib.h presence... yes
checking for bzlib.h... yes
checking for library containing BZ2_bzCompress... -lbz2
checking for bzip2... /usr/sbin/bzip2
configure: will use system package and not install SPKG bzip2
-----------------------------------------------------------------------------
Checking whether SageMath should install SPKG cbc...
checking whether any of atlas openblas zlib bzip2 is installed as or will be installed as SPKG... no
checking for cbc >= 2.9.4... no
configure: no suitable system package found for SPKG cbc
-----------------------------------------------------------------------------
Checking whether SageMath should install SPKG cddlib...
checking whether any of gmp mpir is installed as or will be installed as SPKG... no
checking for cddexec... no
checking for cddexec_gmp... no
checking for redcheck_gmp... no
checking for scdd_gmp... no
checking for scdd... no
checking for cdd.h... no
checking for library containing dd_abs... no
configure: no suitable system package found for SPKG cddlib
-----------------------------------------------------------------------------
Checking whether SageMath should install SPKG cliquer...
checking for library containing clique_unweighted_max_weight... no
configure: no suitable system package found for SPKG cliquer
-----------------------------------------------------------------------------
Checking whether SageMath should install SPKG cmake...
checking for cmake >= 3.4... 
configure: no suitable system package found for SPKG cmake
-----------------------------------------------------------------------------
Checking whether SageMath should install SPKG coxeter3...
checking for library coxeter3... no
configure: no suitable system package found for SPKG coxeter3
-----------------------------------------------------------------------------
Checking whether SageMath should install SPKG curl...
checking for curl 7.22... /bin/curl
checking for gawk... (cached) gawk
checking for curl-config... /usr/sbin/curl-config
checking for the version of libcurl... 7.72.0
checking for libcurl >= version 7.22... yes
checking whether libcurl is usable... yes
checking for curl_free... yes
checking whether programs linking to libcurl can be executed... yes
configure: will use system package and not install SPKG curl
-----------------------------------------------------------------------------
Checking whether SageMath should install SPKG ncurses...
checking for ncurses >= 6.0... no
checking ncurses.h usability... yes
checking ncurses.h presence... yes
checking for ncurses.h... yes
checking for library containing wresize... -lncurses
configure: will use system package and not install SPKG ncurses
-----------------------------------------------------------------------------
Checking whether SageMath should install SPKG readline...
checking Installing ncurses? ... No.
checking for readline >= 6.0... no
checking readline/readline.h usability... yes
checking readline/readline.h presence... yes
checking for readline/readline.h... yes
checking for library containing rl_bind_keyseq... -lreadline
configure: will use system package and not install SPKG readline
-----------------------------------------------------------------------------
Checking whether SageMath should install SPKG pari...
checking whether any of gmp mpir readline is installed as or will be installed as SPKG... no
checking for gp... /usr/sbin/gp
checking for gphelp... /usr/sbin/gphelp
checking whether gphelp has access to the documentation... yes
checking is pari_elldata installed? ... yes
checking is pari_galdata installed? ... yes
checking is pari_galpol installed? ... yes
checking is pari_seadata installed? ... no; cannot use system pari/GP without seadata package
configure: Install seadata package and reconfigure.
configure: Otherwise Sage will build its own pari/GP.
checking whether hyperellcharpoly bug is fixed... yes
checking whether bnfisunit bug of pari 2.11.3 is fixed... yes
configure: no suitable system package found for SPKG pari
-----------------------------------------------------------------------------
Checking whether SageMath should install SPKG eclib...
checking whether any of ntl pari flint is installed as or will be installed as SPKG... yes; install eclib as well
configure: no suitable system package found for SPKG eclib
-----------------------------------------------------------------------------
Checking whether SageMath should install SPKG ecm...
checking installing gmp/mpir? ... no. 
checking ecm.h usability... yes
checking ecm.h presence... yes
checking for ecm.h... yes
checking absolute name of <ecm.h>... checking for ecm.h... (cached) yes
///usr/include/ecm.h
checking for library containing ecm_factor... -lecm
checking for ecm... /usr/sbin/ecm
configure: will use system package and not install SPKG ecm
-----------------------------------------------------------------------------
Checking whether SageMath should install SPKG givaro...
checking whether any of gmp mpir is installed as or will be installed as SPKG... no
checking for givaro-config... no
configure: givaro-config not found. Installing givaro
configure: no suitable system package found for SPKG givaro
-----------------------------------------------------------------------------
Checking whether SageMath should install SPKG fflas_ffpack...
checking whether any of atlas givaro gmp mpir openblas is installed as or will be installed as SPKG... yes; install fflas_ffpack as well
configure: no suitable system package found for SPKG fflas_ffpack
checking whether C++ compiler accepts -mavx512f -mavx512vl -mavx512dq... yes
checking whether C++ compiler accepts -mfma... yes
checking whether C++ compiler accepts -mfma4... yes
-----------------------------------------------------------------------------
Checking whether SageMath should install SPKG flintqs...
checking for QuadraticSieve... no
configure: no suitable system package found for SPKG flintqs
-----------------------------------------------------------------------------
Checking whether SageMath should install SPKG fplll...
checking whether any of mpfr is installed as or will be installed as SPKG... no
checking for fplll >= 5.3... no
configure: no suitable system package found for SPKG fplll
-----------------------------------------------------------------------------
Checking whether SageMath should install SPKG freetype...
checking whether any of libpng is installed as or will be installed as SPKG... yes; install freetype as well
configure: no suitable system package found for SPKG freetype
-----------------------------------------------------------------------------
Checking whether SageMath should install SPKG gf2x...
checking for gf2x >= 1.2... no
checking gf2x.h usability... no
checking gf2x.h presence... no
checking for gf2x.h... no
checking for library containing gf2x_mul_r... no
configure: no suitable system package found for SPKG gf2x
-----------------------------------------------------------------------------
Checking whether SageMath should install SPKG gfan...
checking for gfan >= 0.6.2... 
configure: no suitable system package found for SPKG gfan
-----------------------------------------------------------------------------
Checking whether SageMath should install SPKG git...
checking for git... /bin/git
configure: will use system package and not install SPKG git
-----------------------------------------------------------------------------
Checking whether SageMath should install SPKG glpk...
checking whether any of gmp mpir zlib is installed as or will be installed as SPKG... no
checking for glpsol... /usr/sbin/glpsol
checking glpk.h usability... yes
checking glpk.h presence... yes
checking for glpk.h... yes
checking for library containing glp_config... -lglpk
yes. Use system's glpk
configure: will use system package and not install SPKG glpk
using glpk from the system
-----------------------------------------------------------------------------
Checking whether SageMath should install SPKG gp2c...
checking whether any of pari is installed as or will be installed as SPKG... yes; install gp2c as well
configure: pari.cfg is $SAGE_LOCAL/lib/pari/pari.cfg
-----------------------------------------------------------------------------
Checking whether SageMath should install SPKG gsl...
checking whether any of atlas openblas is installed as or will be installed as SPKG... no
checking for gsl >= $2.4... yes
configure: will use system package and not install SPKG gsl
checking for ld used by gcc... /usr/sbin/ld
checking if the linker (/usr/sbin/ld) is GNU ld... yes
checking for shared library run path origin... done
checking 32-bit host C ABI... no
checking for ELF binary format... yes
checking for the common suffixes of directories in the library search path... lib,lib,lib64
checking for iconv... yes
checking for working iconv... yes
checking for iconv declaration... 
         extern size_t iconv (iconv_t cd, char * *inbuf, size_t *inbytesleft, char * *outbuf, size_t *outbytesleft);
-----------------------------------------------------------------------------
Checking whether SageMath should install SPKG iconv...
configure: will use system package and not install SPKG iconv
-----------------------------------------------------------------------------
Checking whether SageMath should install SPKG iml...
checking whether any of gmp mpir openblas is installed as or will be installed as SPKG... no
checking for iml.h... no
configure: no suitable system package found for SPKG iml
-----------------------------------------------------------------------------
Checking whether SageMath should install SPKG isl...
checking installing gmp/mpir? ... no
checking for isl >= 0.20... no
configure: no suitable system package found for SPKG isl
-----------------------------------------------------------------------------
Checking whether SageMath should install SPKG lcalc...
checking whether any of pari mpfr is installed as or will be installed as SPKG... yes; install lcalc as well
configure: no suitable system package found for SPKG lcalc
-----------------------------------------------------------------------------
Checking whether SageMath should install SPKG libatomic_ops...
checking for atomic_ops >= 7.6.2... no
configure: no suitable system package found for SPKG libatomic_ops
-----------------------------------------------------------------------------
Checking whether SageMath should install SPKG libbraiding...
checking if we can link against libbraiding... no
configure: no suitable system package found for SPKG libbraiding
-----------------------------------------------------------------------------
Checking whether SageMath should install SPKG libffi...
checking for libffi... no
checking ffi/ffi.h usability... no
checking ffi/ffi.h presence... no
checking for ffi/ffi.h... no
checking ffi.h usability... no
checking ffi.h presence... no
checking for ffi.h... no
checking for library containing ffi_call... no
configure: no suitable system package found for SPKG libffi
-----------------------------------------------------------------------------
Checking whether SageMath should install SPKG libgd...
checking Installing freetype? ... Yes. Install libgd as well.
configure: no suitable system package found for SPKG libgd
-----------------------------------------------------------------------------
Checking whether SageMath should install SPKG nauty...
checking for geng... no
checking for nauty-geng... no
configure: no suitable system package found for SPKG nauty
-----------------------------------------------------------------------------
Checking whether SageMath should install SPKG libnauty...
checking whether any of nauty is installed as or will be installed as SPKG... yes; install libnauty as well
configure: no suitable system package found for SPKG libnauty
-----------------------------------------------------------------------------
Checking whether SageMath should install SPKG libsemigroups...
checking for libsemigroups >= 0.6.7... no
configure: no suitable system package found for SPKG libsemigroups
-----------------------------------------------------------------------------
Checking whether SageMath should install SPKG lrcalc...
checking for lrcalc/schublib.h... no
configure: no suitable system package found for SPKG lrcalc
-----------------------------------------------------------------------------
Checking whether SageMath should install SPKG m4rie...
checking whether any of m4ri is installed as or will be installed as SPKG... yes; install m4rie as well
configure: no suitable system package found for SPKG m4rie
-----------------------------------------------------------------------------
Checking whether SageMath should install SPKG mpc...
checking installing mpfr? ... no
checking mpc.h usability... yes
checking mpc.h presence... yes
checking for mpc.h... yes
checking for library containing mpc_cmp_abs... -lmpc
configure: will use system package and not install SPKG mpc
using mpc library from the system
-----------------------------------------------------------------------------
Checking whether SageMath should install SPKG mpfi...
checking installing mpfr? ... no
checking mpfi.h usability... no
checking mpfi.h presence... no
checking for mpfi.h... no
checking for library containing mpfi_diam_abs... no
configure: no suitable system package found for SPKG mpfi
-----------------------------------------------------------------------------
Checking whether SageMath should install SPKG ninja_build...
checking for ninja >= 1.7.2... 
configure: no suitable system package found for SPKG ninja_build
-----------------------------------------------------------------------------
Checking whether SageMath should install SPKG palp...
checking for poly.x... no
checking for poly-4d.x... no
checking for poly-5d.x... no
checking for poly-6d.x... no
checking for poly-11d.x... no
checking for class.x... no
checking for class-4d.x... no
checking for class-5d.x... no
checking for class-6d.x... no
checking for class-11d.x... no
checking for nef.x... no
checking for nef-4d.x... no
checking for nef-5d.x... no
checking for nef-6d.x... no
checking for nef-11d.x... no
checking for cws.x... no
checking for cws-4d.x... no
checking for cws-5d.x... no
checking for cws-6d.x... no
checking for cws-11d.x... no
configure: no suitable system package found for SPKG palp
-----------------------------------------------------------------------------
Checking whether SageMath should install SPKG pandoc...
checking for pandoc... no
configure: no suitable system package found for SPKG pandoc
-----------------------------------------------------------------------------
Checking whether SageMath should install SPKG pari_elldata...
checking installing pari? ... yes; install pari_elldata as well
configure: no suitable system package found for SPKG pari_elldata
-----------------------------------------------------------------------------
Checking whether SageMath should install SPKG pari_galdata...
checking installing pari? ... yes; install pari_galdata as well
configure: no suitable system package found for SPKG pari_galdata
-----------------------------------------------------------------------------
Checking whether SageMath should install SPKG pari_galpol...
checking installing pari? ... yes; install pari_galpol as well
configure: no suitable system package found for SPKG pari_galpol
-----------------------------------------------------------------------------
Checking whether SageMath should install SPKG pari_nftables...
checking installing pari? ... yes; install pari_nftables as well
configure: no suitable system package found for SPKG pari_nftables
-----------------------------------------------------------------------------
Checking whether SageMath should install SPKG pari_seadata...
checking installing pari? ... yes; install pari_seadata as well
configure: no suitable system package found for SPKG pari_seadata
-----------------------------------------------------------------------------
Checking whether SageMath should install SPKG pari_seadata_small...
checking installing pari? ... yes; install pari_seadata_small as well
configure: no suitable system package found for SPKG pari_seadata_small
-----------------------------------------------------------------------------
Checking whether SageMath should install SPKG patch...
checking for GNU patch >= 2.7.0... /bin/patch
configure: will use system package and not install SPKG patch
-----------------------------------------------------------------------------
Checking whether SageMath should install SPKG pcre...
checking installing bzip2? ... no
checking for libpcre >= 8.39 libpcreposix libpcrecpp... yes
configure: will use system package and not install SPKG pcre
-----------------------------------------------------------------------------
Checking whether SageMath should install SPKG perl_cpan_polymake_prereq...
checking for perl module XML::Writer... no
checking for perl module XML::LibXML... no
checking for perl module XML::LibXSLT... no
checking for perl module File::Slurp... no
checking for perl module JSON... no
checking for perl module SVG... no
checking for perl module MongoDB... no
configure: no suitable system package found for SPKG perl_cpan_polymake_prereq
-----------------------------------------------------------------------------
Checking whether SageMath should install SPKG perl_term_readline_gnu...
checking for perl module Term::ReadLine... ok
checking Term::ReadLine module...... non-GNU
configure: no suitable system package found for SPKG perl_term_readline_gnu
-----------------------------------------------------------------------------
Checking whether SageMath should install SPKG pkgconf...
checking for pkg-config >= 0.29... /bin/pkg-config
using pkg-config from the system
configure: will use system package and not install SPKG pkgconf
-----------------------------------------------------------------------------
Checking whether SageMath should install SPKG planarity...
checking planarity/planarity.h usability... no
checking planarity/planarity.h presence... no
checking for planarity/planarity.h... no
configure: no suitable system package found for SPKG planarity
-----------------------------------------------------------------------------
Checking whether SageMath should install SPKG ppl...
checking whether any of glpk gmp mpir is installed as or will be installed as SPKG... no
checking for ppl-config... /usr/sbin/ppl-config
checking for the Parma Polyhedra Library, version >= 1.2... yes
configure: will use system package and not install SPKG ppl
-----------------------------------------------------------------------------
Checking whether SageMath should install SPKG sqlite...
checking libsqlite3 >= sqlite3_min_version... yes
configure: will use system package and not install SPKG sqlite
-----------------------------------------------------------------------------
Checking whether SageMath should install SPKG xz...
checking for lzma_raw_decoder in -llzma... yes
checking lzma.h usability... yes
checking lzma.h presence... yes
checking for lzma.h... yes
checking for xz >= 4.999.0... /bin/xz
configure: will use system package and not install SPKG xz
-----------------------------------------------------------------------------
Checking whether SageMath should install SPKG python3...
checking whether any of sqlite libpng bzip2 xz libffi is installed as or will be installed as SPKG... yes; install python3 as well
configure: no suitable system package found for SPKG python3
-----------------------------------------------------------------------------
Checking whether SageMath should install SPKG r...
checking whether any of atlas openblas iconv readline bzip2 xz pcre curl is installed as or will be installed as SPKG... no
checking for libR >= $3.4.4... yes
checking for R... /usr/sbin/R
configure: will use system package and not install SPKG r
-----------------------------------------------------------------------------
Checking whether SageMath should install SPKG rw...
checking rw.h usability... no
checking rw.h presence... no
checking for rw.h... no
checking for library containing calculate_level... no
configure: no suitable system package found for SPKG rw
-----------------------------------------------------------------------------
Checking whether SageMath should install SPKG suitesparse...
checking whether any of openblas is installed as or will be installed as SPKG... no
checking for library containing cholmod_speye... no
configure: no suitable system package found for SPKG suitesparse
-----------------------------------------------------------------------------
Checking whether SageMath should install SPKG symmetrica...
checking symmetrica/def.h usability... no
checking symmetrica/def.h presence... no
checking for symmetrica/def.h... no
configure: no suitable system package found for SPKG symmetrica
-----------------------------------------------------------------------------
Checking whether SageMath should install SPKG sympow...
checking for sympow... no
configure: no suitable system package found for SPKG sympow
-----------------------------------------------------------------------------
Checking whether SageMath should install SPKG tachyon...
checking for tachyon... no
configure: tachyon not found. Installing tachyon
configure: no suitable system package found for SPKG tachyon
-----------------------------------------------------------------------------
Checking whether SageMath should install SPKG yasm...
checking for yasm supporting the adox instruction... /bin/yasm
configure: will use system package and not install SPKG yasm
-----------------------------------------------------------------------------
Checking whether SageMath should install SPKG zeromq...
checking zmq.h usability... yes
checking zmq.h presence... yes
checking for zmq.h... yes
checking for ZMQ version >= 4.2.5... yes
configure: will use system package and not install SPKG zeromq
-----------------------------------------------------------------------------
Checking whether SageMath should install SPKG zn_poly...
checking whether any of gmp mpir is installed as or will be installed as SPKG... no
checking zn_poly/zn_poly.h usability... no
checking zn_poly/zn_poly.h presence... no
checking for zn_poly/zn_poly.h... no
configure: no suitable system package found for SPKG zn_poly
## ----------------------------------------------------------------------- ##
## Build status for each package:                                          ##
## ----------------------------------------------------------------------- ##
4ti2-1.6.7.p0:                               does not support check for system package; optional, use "./configure --enable-4ti2" to install
alabaster-0.7.12:                            does not support check for system package; will be installed as an SPKG
appnope-0.1.0.p0:                            does not support check for system package; will be installed as an SPKG
arb-2.16.0.p0:                               no suitable system package; will be installed as an SPKG
atlas-3.10.2.p3:                             not required on your platform; SPKG will not be installed
attrs-19.3.0:                                does not support check for system package; will be installed as an SPKG
awali-1.0.2-190218:                          does not support check for system package; experimental, use "./configure --enable-awali" to install
babel-2.6.0:                                 does not support check for system package; will be installed as an SPKG
backcall-0.1.0:                              does not support check for system package; will be installed as an SPKG
barvinok-0.41.1:                             does not support check for system package; optional, use "./configure --enable-barvinok" to install
beautifulsoup4-none:                         does not support check for system package; optional pip package; use "./sage -i beautifulsoup4" to install
benzene-20130630:                            does not support check for system package; optional, use "./configure --enable-benzene" to install
biopython-none:                              does not support check for system package; optional pip package; use "./sage -i biopython" to install
bleach-3.1.5:                                does not support check for system package; will be installed as an SPKG
bliss-0.73+debian-1+sage-2016-08-02.p0:      does not support check for system package; optional, use "./configure --enable-bliss" to install
boost-1_66_0:                                no suitable system package; optional, use "./configure --enable-boost" to install
boost_cropped-1.66.0.p0:                     no suitable system package; will be installed as an SPKG
brial-1.2.8:                                 no suitable system package; will be installed as an SPKG
buckygen-1.1:                                does not support check for system package; optional, use "./configure --enable-buckygen" to install
bzip2-1.0.6-20150304.p0:                     using system package; SPKG will not be installed
cbc-2.9.4.p0:                                no suitable system package; optional, use "./configure --enable-cbc" to install
ccache-3.3.4:                                does not support check for system package; optional, use "./configure --enable-ccache" to install
cddlib-0.94j:                                no suitable system package; will be installed as an SPKG
certifi-2020.6.20:                           does not support check for system package; will be installed as an SPKG
cffi-1.14.0:                                 does not support check for system package; will be installed as an SPKG
cliquer-1.21.p4:                             no suitable system package; will be installed as an SPKG
cmake-3.18.2:                                no suitable system package; optional, use "./configure --enable-cmake" to install
cocoalib-0.99564:                            does not support check for system package; experimental, use "./configure --enable-cocoalib" to install
combinatorial_designs-20140630.p0:           does not support check for system package; will be installed as an SPKG
compilerwrapper-1.2:                         does not support check for system package; experimental, use "./configure --enable-compilerwrapper" to install
configure-5efa8df9cd13231bf53759c11b6910106992b7d4:does not support check for system package; came preinstalled with the SageMath tarball
conway_polynomials-0.5:                      does not support check for system package; will be installed as an SPKG
coxeter3-8ac9c71723c8ca57a836d6381aed125261e44e9e.p0:no suitable system package; optional, use "./configure --enable-coxeter3" to install
cryptominisat-5.6.8:                         does not support check for system package; optional, use "./configure --enable-cryptominisat" to install
csdp-6.2.p0:                                 does not support check for system package; optional, use "./configure --enable-csdp" to install
cunningham_tables-1.0:                       does not support check for system package; optional, use "./configure --enable-cunningham_tables" to install
curl-7.62.0.p0:                              using system package; SPKG will not be installed
cvxopt-1.2.5:                                does not support check for system package; will be installed as an SPKG
cycler-0.10.0.p0:                            does not support check for system package; will be installed as an SPKG
cypari-2.1.1:                                does not support check for system package; will be installed as an SPKG
cysignals-1.10.2:                            does not support check for system package; will be installed as an SPKG
cython-0.29.21:                              does not support check for system package; will be installed as an SPKG
d3js-3.4.8:                                  does not support check for system package; optional, use "./configure --enable-d3js" to install
database_cremona_ellcurve-20190911:          does not support check for system package; optional, use "./configure --enable-database_cremona_ellcurve" to install
database_jones_numfield-4:                   does not support check for system package; optional, use "./configure --enable-database_jones_numfield" to install
database_kohel-20160724:                     does not support check for system package; optional, use "./configure --enable-database_kohel" to install
database_mutation_class-1.0:                 does not support check for system package; optional, use "./configure --enable-database_mutation_class" to install
database_odlyzko_zeta-20061209:              does not support check for system package; optional, use "./configure --enable-database_odlyzko_zeta" to install
database_stein_watkins-20110713:             does not support check for system package; optional, use "./configure --enable-database_stein_watkins" to install
database_stein_watkins_mini-20070827:        does not support check for system package; optional, use "./configure --enable-database_stein_watkins_mini" to install
database_symbolic_data-20070206:             does not support check for system package; optional, use "./configure --enable-database_symbolic_data" to install
dateutil-2.8.1:                              does not support check for system package; will be installed as an SPKG
decorator-4.4.0:                             does not support check for system package; will be installed as an SPKG
deformation-d05941b.p0:                      does not support check for system package; optional, use "./configure --enable-deformation" to install
defusedxml-0.6.0:                            does not support check for system package; will be installed as an SPKG
docutils-0.14:                               does not support check for system package; will be installed as an SPKG
dot2tex-2.11.3.p0:                           does not support check for system package; optional, use "./configure --enable-dot2tex" to install
e_antic-0.1.8:                               does not support check for system package; optional, use "./configure --enable-e_antic" to install
ecl-20.4.24.p1:                              does not support check for system package; will be installed as an SPKG
eclib-20190909:                              no suitable system package; will be installed as an SPKG
ecm-7.0.4.p1:                                using system package; SPKG will not be installed
elliptic_curves-0.8.1:                       does not support check for system package; will be installed as an SPKG
entrypoints-0.3:                             does not support check for system package; will be installed as an SPKG
fflas_ffpack-2.4.3:                          no suitable system package; will be installed as an SPKG
flint-2.5.2.p5:                              no suitable system package; will be installed as an SPKG
flintqs-1.0.p0:                              no suitable system package; will be installed as an SPKG
fplll-5.3.3:                                 no suitable system package; will be installed as an SPKG
fpylll-0.5.1dev:                             does not support check for system package; will be installed as an SPKG
freetype-2.10.1:                             no suitable system package; will be installed as an SPKG
fricas-1.3.6:                                does not support check for system package; optional, use "./configure --enable-fricas" to install
frobby-0.9.0.p2:                             does not support check for system package; optional, use "./configure --enable-frobby" to install
gambit-15.1.1.p0:                            does not support check for system package; experimental, use "./configure --enable-gambit" to install
gap-4.10.2.p1:                               does not support check for system package; will be installed as an SPKG
gap3-04jul17:                                does not support check for system package; experimental, use "./configure --enable-gap3" to install
gap_jupyter-0.9:                             does not support check for system package; optional, use "./configure --enable-gap_jupyter" to install
gap_packages-4.10.2.p1:                      does not support check for system package; optional, use "./configure --enable-gap_packages" to install
gc-8.0.4:                                    does not support check for system package; will be installed as an SPKG
gcc-9.2.0:                                   using system package; SPKG will not be installed
gdb-8.2:                                     does not support check for system package; experimental, use "./configure --enable-gdb" to install
gf2x-1.3.0:                                  no suitable system package; will be installed as an SPKG
gfan-0.6.2.p1:                               no suitable system package; will be installed as an SPKG
gfortran-9.2.0:                              using system package; SPKG will not be installed
giac-1.5.0.87p0:                             does not support check for system package; will be installed as an SPKG
git-2.11.0:                                  using system package; SPKG will not be installed
git_trac-20160625.p0:                        does not support check for system package; optional, use "./configure --enable-git_trac" to install
givaro-4.1.1:                                no suitable system package; will be installed as an SPKG
glpk-4.65.p0:                                using system package; SPKG will not be installed
glucose-4.1:                                 does not support check for system package; optional, use "./configure --enable-glucose" to install
gmp-6.1.2:                                   using system package; SPKG will not be installed
gmpy2-2.1.0b1:                               does not support check for system package; will be installed as an SPKG
gp2c-0.0.10.p0:                              no suitable system package; optional, use "./configure --enable-gp2c" to install
graphs-20161026.p0:                          does not support check for system package; will be installed as an SPKG
gsl-2.6:                                     using system package; SPKG will not be installed
html5lib-1.0.1:                              does not support check for system package; will be installed as an SPKG
iconv-1.15:                                  using system package; SPKG will not be installed
igraph-0.7.1999.p0:                          does not support check for system package; optional, use "./configure --enable-igraph" to install
imagesize-1.1.0:                             does not support check for system package; will be installed as an SPKG
iml-1.0.4p1.p2:                              no suitable system package; will be installed as an SPKG
importlib_metadata-1.7.0:                    does not support check for system package; will be installed as an SPKG
ipykernel-5.2.1:                             does not support check for system package; will be installed as an SPKG
ipython-7.13.0:                              does not support check for system package; will be installed as an SPKG
ipython_genutils-0.2.0:                      does not support check for system package; will be installed as an SPKG
ipywidgets-7.5.1:                            does not support check for system package; will be installed as an SPKG
isl-0.20:                                    no suitable system package; optional, use "./configure --enable-isl" to install
itsdangerous-1.1.0:                          does not support check for system package; will be installed as an SPKG
jedi-0.17.0:                                 does not support check for system package; will be installed as an SPKG
jinja2-2.11.2:                               does not support check for system package; will be installed as an SPKG
jmol-14.29.52:                               does not support check for system package; will be installed as an SPKG
jsonschema-3.2.0:                            does not support check for system package; will be installed as an SPKG
jupymake-0.9:                                does not support check for system package; optional, use "./configure --enable-jupymake" to install
jupyter_client-6.1.6:                        does not support check for system package; will be installed as an SPKG
jupyter_core-4.6.3:                          does not support check for system package; will be installed as an SPKG
jupyterlab-none:                             does not support check for system package; optional pip package; use "./sage -i jupyterlab" to install
jupyterlab_widgets-2.0:                      does not support check for system package; optional, use "./configure --enable-jupyterlab_widgets" to install
kenzo-1.1.9:                                 does not support check for system package; optional, use "./configure --enable-kenzo" to install
kiwisolver-1.0.1:                            does not support check for system package; will be installed as an SPKG
latte_int-1.7.5.p0:                          does not support check for system package; optional, use "./configure --enable-latte_int" to install
lcalc-1.23.p19:                              no suitable system package; will be installed as an SPKG
libatomic_ops-7.6.10:                        no suitable system package; will be installed as an SPKG
libbraiding-1.0.p0:                          no suitable system package; will be installed as an SPKG
libffi-3.2.1:                                no suitable system package; will be installed as an SPKG
libgd-2.1.1.1.p1:                            no suitable system package; will be installed as an SPKG
libhomfly-1.02r6:                            does not support check for system package; will be installed as an SPKG
libnauty-none:                               no suitable system package; optional, use "./configure --enable-libnauty" to install
libogg-1.3.1.p0:                             does not support check for system package; optional, use "./configure --enable-libogg" to install
libpng-1.6.29.p1:                            no suitable system package; will be installed as an SPKG
libsemigroups-0.6.7:                         no suitable system package; optional, use "./configure --enable-libsemigroups" to install
libtheora-1.1.1:                             does not support check for system package; experimental, use "./configure --enable-libtheora" to install
lidia-2.3.0+latte-patches-2019-05-02:        does not support check for system package; optional, use "./configure --enable-lidia" to install
lie-2.2.2:                                   does not support check for system package; experimental, use "./configure --enable-lie" to install
linbox-1.6.3.p0:                             does not support check for system package; will be installed as an SPKG
lrcalc-1.2.p1:                               no suitable system package; will be installed as an SPKG
lrslib-062+autotools-2017-03-03.p1:          does not support check for system package; optional, use "./configure --enable-lrslib" to install
m4ri-20200115:                               no suitable system package; will be installed as an SPKG
m4rie-20200115:                              no suitable system package; will be installed as an SPKG
markupsafe-1.1.0:                            does not support check for system package; will be installed as an SPKG
mathjax-2.7.4.p0:                            does not support check for system package; will be installed as an SPKG
matplotlib-3.3.1:                            does not support check for system package; will be installed as an SPKG
maxima-5.44.0:                               does not support check for system package; will be installed as an SPKG
mcqd-1.0.p0:                                 does not support check for system package; optional, use "./configure --enable-mcqd" to install
meataxe-1.0.p0:                              does not support check for system package; optional, use "./configure --enable-meataxe" to install
mistune-0.8.4:                               does not support check for system package; will be installed as an SPKG
modular_decomposition-20100607:              does not support check for system package; experimental, use "./configure --enable-modular_decomposition" to install
mpc-1.1.0:                                   using system package; SPKG will not be installed
mpfi-1.5.2:                                  no suitable system package; will be installed as an SPKG
mpfr-4.0.1.p0:                               using system package; SPKG will not be installed
mpfrcx-0.5:                                  does not support check for system package; optional, use "./configure --enable-mpfrcx" to install
mpir-3.0.0-644faf502c56f97d9accd301965fc57d6ec70868.p0:using system package; SPKG will not be installed
mpmath-1.1.0:                                does not support check for system package; will be installed as an SPKG
nauty-27r1.p1:                               no suitable system package; will be installed as an SPKG
nbconvert-5.6.1:                             does not support check for system package; will be installed as an SPKG
nbformat-5.0.7:                              does not support check for system package; will be installed as an SPKG
ncurses-6.0.p0:                              using system package; SPKG will not be installed
networkx-2.4:                                does not support check for system package; will be installed as an SPKG
nibabel-none:                                does not support check for system package; optional pip package; use "./sage -i nibabel" to install
ninja_build-1.8.2:                           no suitable system package; optional, use "./configure --enable-ninja_build" to install
nodeenv-none:                                does not support check for system package; optional pip package; use "./sage -i nodeenv" to install
nodejs-12.18.3:                              does not support check for system package; optional, use "./configure --enable-nodejs" to install
normaliz-3.8.8:                              does not support check for system package; optional, use "./configure --enable-normaliz" to install
nose-1.3.7:                                  does not support check for system package; will be installed as an SPKG
notebook-6.1.1:                              does not support check for system package; will be installed as an SPKG
notedown-1.5.1:                              does not support check for system package; optional, use "./configure --enable-notedown" to install
ntl-11.4.3:                                  no suitable system package; will be installed as an SPKG
numpy-1.19.1:                                does not support check for system package; will be installed as an SPKG
openblas-0.3.9:                              using system package; SPKG will not be installed
openssl-1.1.1g:                              does not support check for system package; optional, use "./configure --enable-openssl" to install
p_group_cohomology-3.3:                      does not support check for system package; optional, use "./configure --enable-p_group_cohomology" to install
packaging-18.0:                              does not support check for system package; will be installed as an SPKG
palp-2.11:                                   no suitable system package; will be installed as an SPKG
pandoc-none:                                 no suitable system package; optional, use "./configure --enable-pandoc" to install
pandoc_attributes-8bc82f6d:                  does not support check for system package; optional, use "./configure --enable-pandoc_attributes" to install
pandocfilters-1.4.2:                         does not support check for system package; will be installed as an SPKG
pari-2.11.4.p0:                              no suitable system package; will be installed as an SPKG
pari_elldata-20161017:                       no suitable system package; optional, use "./configure --enable-pari_elldata" to install
pari_galdata-20080411.p0:                    no suitable system package; will be installed as an SPKG
pari_galpol-20180625:                        no suitable system package; optional, use "./configure --enable-pari_galpol" to install
pari_jupyter-1.3.2:                          does not support check for system package; optional, use "./configure --enable-pari_jupyter" to install
pari_nftables-20080929:                      no suitable system package; optional, use "./configure --enable-pari_nftables" to install
pari_seadata-20090618:                       no suitable system package; optional, use "./configure --enable-pari_seadata" to install
pari_seadata_small-20090618.p0:              no suitable system package; will be installed as an SPKG
parso-0.7.0:                                 does not support check for system package; will be installed as an SPKG
patch-2.7.5:                                 using system package; SPKG will not be installed
pathpy-7.1.p0:                               does not support check for system package; will be installed as an SPKG
pcre-8.40.p2:                                using system package; SPKG will not be installed
perl_cpan_polymake_prereq-none:              no suitable system package; optional, use "./configure --enable-perl_cpan_polymake_prereq" to install
perl_term_readline_gnu-1.35:                 no suitable system package; experimental, use "./configure --enable-perl_term_readline_gnu" to install
pexpect-4.8.0:                               does not support check for system package; will be installed as an SPKG
pickleshare-0.7.5:                           does not support check for system package; will be installed as an SPKG
pillow-7.2.0:                                does not support check for system package; will be installed as an SPKG
pip-20.2.2:                                  does not support check for system package; will be installed as an SPKG
pkgconf-0.9.7.p2:                            using system package; SPKG will not be installed
pkgconfig-1.5.1:                             does not support check for system package; will be installed as an SPKG
planarity-3.0.0.5.p0:                        no suitable system package; will be installed as an SPKG
plantri-4.5:                                 does not support check for system package; optional, use "./configure --enable-plantri" to install
polylib-5.22.5:                              does not support check for system package; optional, use "./configure --enable-polylib" to install
polymake-3.4:                                does not support check for system package; experimental, use "./configure --enable-polymake" to install
polytopes_db-20170220.p0:                    does not support check for system package; will be installed as an SPKG
polytopes_db_4d-1.0:                         does not support check for system package; optional, use "./configure --enable-polytopes_db_4d" to install
ppl-1.2.p1:                                  using system package; SPKG will not be installed
pplpy-0.8.4:                                 does not support check for system package; will be installed as an SPKG
primecount-5.1:                              does not support check for system package; optional, use "./configure --enable-primecount" to install
prometheus_client-0.8.0:                     does not support check for system package; will be installed as an SPKG
prompt_toolkit-3.0.5:                        does not support check for system package; will be installed as an SPKG
psutil-5.2.0.p2:                             does not support check for system package; will be installed as an SPKG
ptyprocess-0.5.1.p0:                         does not support check for system package; will be installed as an SPKG
pybind11-2.5.0:                              does not support check for system package; will be installed as an SPKG
pybtex-none:                                 does not support check for system package; optional pip package; use "./sage -i pybtex" to install
pycosat-0.6.3:                               does not support check for system package; optional, use "./configure --enable-pycosat" to install
pycparser-2.20:                              does not support check for system package; will be installed as an SPKG
pycygwin-0.1:                                does not support check for system package; will be installed as an SPKG
pyflakes-none:                               does not support check for system package; optional pip package; use "./sage -i pyflakes" to install
pygments-2.3.1.p0:                           does not support check for system package; will be installed as an SPKG
pynac-0.7.26.sage-2020-04-03.p0:             does not support check for system package; will be installed as an SPKG
pynormaliz-2.12:                             does not support check for system package; optional, use "./configure --enable-pynormaliz" to install
pyopenssl-none:                              does not support check for system package; optional pip package; use "./sage -i pyopenssl" to install
pyparsing-2.3.0:                             does not support check for system package; will be installed as an SPKG
pyrsistent-0.16.0:                           does not support check for system package; will be installed as an SPKG
pysingular-0.9.5:                            does not support check for system package; optional, use "./configure --enable-pysingular" to install
pytest-none:                                 does not support check for system package; optional pip package; use "./sage -i pytest" to install
python3-3.8.5:                               no suitable system package; will be installed as an SPKG
python_igraph-0.7.1999:                      does not support check for system package; optional, use "./configure --enable-python_igraph" to install
python_openid-2.2.5.p0:                      does not support check for system package; optional, use "./configure --enable-python_openid" to install
pytz-2020.1:                                 does not support check for system package; will be installed as an SPKG
pyx-none:                                    does not support check for system package; optional pip package; use "./sage -i pyx" to install
pyzmq-19.0.2:                                does not support check for system package; will be installed as an SPKG
qepcad-B.1.72:                               does not support check for system package; experimental, use "./configure --enable-qepcad" to install
qhull-2015-src-7.2.0.p1:                     does not support check for system package; optional, use "./configure --enable-qhull" to install
r-3.6.3:                                     using system package; SPKG will not be installed
r_jupyter-none:                              does not support check for system package; optional, use "./configure --enable-r_jupyter" to install
ratpoints-2.1.3.p5:                          does not support check for system package; will be installed as an SPKG
readline-6.3.008.p0:                         using system package; SPKG will not be installed
requests-2.13.0:                             does not support check for system package; will be installed as an SPKG
rpy2-3.3.5:                                  does not support check for system package; will be installed as an SPKG
rst2ipynb-0.2.2.p0:                          does not support check for system package; optional, use "./configure --enable-rst2ipynb" to install
rubiks-20070912.p21:                         does not support check for system package; will be installed as an SPKG
rw-0.7.p0:                                   no suitable system package; will be installed as an SPKG
saclib-2.2.7:                                does not support check for system package; optional, use "./configure --enable-saclib" to install
sage_conf-none:                              does not support check for system package; will be installed as an SPKG
sage_numerical_backends_coin-9.0b12:         does not support check for system package; optional, use "./configure --enable-sage_numerical_backends_coin" to install
sage_numerical_backends_cplex-9.0b12:        does not support check for system package; optional, use "./configure --enable-sage_numerical_backends_cplex" to install
sage_numerical_backends_gurobi-9.0.0:        does not support check for system package; optional, use "./configure --enable-sage_numerical_backends_gurobi" to install
sagelib-9.2.beta12:                          does not support check for system package; will be installed as an SPKG
sagenb_export-3.3:                           does not support check for system package; will be installed as an SPKG
sagetex-3.5:                                 does not support check for system package; will be installed as an SPKG
scandir-1.9.0:                               does not support check for system package; will be installed as an SPKG
scipoptsuite-5.0.1:                          does not support check for system package; experimental, use "./configure --enable-scipoptsuite" to install
scipy-1.5.2:                                 does not support check for system package; will be installed as an SPKG
send2trash-1.5.0:                            does not support check for system package; will be installed as an SPKG
setuptools-49.6.0:                           does not support check for system package; will be installed as an SPKG
setuptools_scm-4.1.2:                        does not support check for system package; will be installed as an SPKG
simplegeneric-0.8.1.p0:                      does not support check for system package; will be installed as an SPKG
singular-4.1.1p2.p0:                         does not support check for system package; will be installed as an SPKG
singular_jupyter-0.9.7:                      does not support check for system package; optional, use "./configure --enable-singular_jupyter" to install
sip-4.18:                                    does not support check for system package; optional, use "./configure --enable-sip" to install
sirocco-2.0.2:                               does not support check for system package; optional, use "./configure --enable-sirocco" to install
six-1.12.0:                                  does not support check for system package; will be installed as an SPKG
snowballstemmer-1.2.1.p0:                    does not support check for system package; will be installed as an SPKG
speaklater-1.3.p0:                           does not support check for system package; optional, use "./configure --enable-speaklater" to install
sphinx-3.1.2.p0:                             does not support check for system package; will be installed as an SPKG
sphinxcontrib_applehelp-1.0.2:               does not support check for system package; will be installed as an SPKG
sphinxcontrib_devhelp-1.0.2:                 does not support check for system package; will be installed as an SPKG
sphinxcontrib_htmlhelp-1.0.3:                does not support check for system package; will be installed as an SPKG
sphinxcontrib_jsmath-1.0.1:                  does not support check for system package; will be installed as an SPKG
sphinxcontrib_qthelp-1.0.3:                  does not support check for system package; will be installed as an SPKG
sphinxcontrib_serializinghtml-1.1.4:         does not support check for system package; will be installed as an SPKG
sphinxcontrib_websupport-1.2.1:              does not support check for system package; will be installed as an SPKG
sqlalchemy-none:                             does not support check for system package; optional pip package; use "./sage -i sqlalchemy" to install
sqlite-3290000:                              using system package; SPKG will not be installed
suitesparse-5.6.0:                           no suitable system package; will be installed as an SPKG
surf-1.0.6-gcc6:                             does not support check for system package; experimental, use "./configure --enable-surf" to install
symmetrica-2.0.p11:                          no suitable system package; will be installed as an SPKG
sympow-2.023.6:                              no suitable system package; will be installed as an SPKG
sympy-1.6:                                   does not support check for system package; will be installed as an SPKG
tachyon-0.98.9.p7:                           no suitable system package; will be installed as an SPKG
tdlib-0.3.1.p0:                              does not support check for system package; optional, use "./configure --enable-tdlib" to install
termcap-1.3.1.p3:                            does not support check for system package; optional, use "./configure --enable-termcap" to install
terminado-0.8.3:                             does not support check for system package; will be installed as an SPKG
testpath-0.4.4:                              does not support check for system package; will be installed as an SPKG
texlive-none:                                does not support check for system package; optional, use "./configure --enable-texlive" to install
thebe-9624e0a0.p0:                           does not support check for system package; will be installed as an SPKG
threejs-r117:                                does not support check for system package; will be installed as an SPKG
tides-2.0.p0:                                does not support check for system package; optional, use "./configure --enable-tides" to install
topcom-0.17.7:                               does not support check for system package; optional, use "./configure --enable-topcom" to install
tornado-6.0.4:                               does not support check for system package; will be installed as an SPKG
tox-none:                                    does not support check for system package; optional pip package; use "./sage -i tox" to install
traitlets-4.3.3:                             does not support check for system package; will be installed as an SPKG
tzlocal-2.1:                                 does not support check for system package; will be installed as an SPKG
valgrind-3.14.0:                             does not support check for system package; experimental, use "./configure --enable-valgrind" to install
vcversioner-2.16.0.0.p0:                     does not support check for system package; will be installed as an SPKG
wcwidth-0.1.7.p0:                            does not support check for system package; will be installed as an SPKG
webencodings-0.5.1:                          does not support check for system package; will be installed as an SPKG
wheel-0.34.2:                                does not support check for system package; will be installed as an SPKG
widgetsnbextension-3.5.1:                    does not support check for system package; will be installed as an SPKG
xz-5.2.2.p0:                                 using system package; SPKG will not be installed
yasm-1.3.0.p0:                               using system package; SPKG will not be installed
zeromq-4.2.5:                                using system package; SPKG will not be installed
zipp-0.5.2:                                  does not support check for system package; will be installed as an SPKG
zlib-1.2.11.p0:                              using system package; SPKG will not be installed
zn_poly-0.9.2:                               no suitable system package; will be installed as an SPKG
zope_interface-none:                         does not support check for system package; will be installed as an SPKG

comment:25 in reply to: ↑ 23 ; follow-up: Changed 5 weeks ago by mkoeppe

Replying to gh-dkwo:

I'm puzzled by python, giac, etc: all these should not be built. I forgot to add freetype-devel:

A commit please as usual...

Changed 5 weeks ago by gh-dkwo

more void spkg

comment:26 in reply to: ↑ 25 Changed 5 weeks ago by dimpase

Replying to mkoeppe:

Replying to gh-dkwo:

I'm puzzled by python, giac, etc: all these should not be built. I forgot to add freetype-devel:

A commit please as usual...

config.log would be helpful. I guess some Python3 tests fail, e.g. wrong minor version, or no distutils.core, or...

comment:27 follow-up: Changed 5 weeks ago by gh-dkwo

Sure, I attached void.more​. I have to think why it is not behaving as on my machine. Are you generating a new docker image every time, and then use

xbps-install -S <name of pack>

?

Changed 5 weeks ago by gh-dkwo

config from my machine

comment:28 follow-up: Changed 5 weeks ago by gh-dkwo

I attached config.log from my machine. Only difference should be with isl and gf2x, which are not in repository and I built myself.

comment:29 in reply to: ↑ 28 Changed 5 weeks ago by dimpase

Replying to gh-dkwo:

I attached config.log from my machine. Only difference should be with isl and gf2x, which are not in repository and I built myself.

indeed, it's fine on your machine:

configure:37915: result: python3-3.8.5:                               using system package; SPKG will not be installed

comment:30 Changed 5 weeks ago by git

  • Commit changed from 4bdfc1c35a8e3d0bd4bd26240e7f0bdd8d39b315 to 1f66a31bd7aa7389f5936447a6e4cbe3e200424f

Branch pushed to git repo; I updated commit sha1. New commits:

9852773more void spkg
1f66a31void add freetype

comment:31 in reply to: ↑ 27 Changed 5 weeks ago by mkoeppe

Replying to gh-dkwo:

Sure, I attached void.more​. I have to think why it is not behaving as on my machine. Are you generating a new docker image every time, and then use

xbps-install -S <name of pack>

Yes, a build from scratch every time. This is all automated via tox -e docker-voidlinux-standard

comment:32 Changed 5 weeks ago by mkoeppe

  • Dependencies set to #30663

comment:33 Changed 5 weeks ago by git

  • Commit changed from 1f66a31bd7aa7389f5936447a6e4cbe3e200424f to 7a9318b865c2d0aaf7acd120d2445737028fca6e

Branch pushed to git repo; I updated commit sha1. New commits:

cf94357tox.ini: docker now needs HOME too
7a9318bMerge branch 't/30663/tox_ini__docker_on_mac_now_needs__home_too' into t/30539/more_void_linux_spkg_s

comment:34 Changed 5 weeks ago by mkoeppe

Configuring: ./configure --enable-build-as-root --enable-option-checking --with-system-bzip2=yes --with-system-curl=yes --with-system-ecm=yes --with-system-flint=yes --with-system-freetype=yes --with-system-gfortran=yes --with-system-giac=yes --with-system-glpk=yes --with-system-gmp=yes --with-system-gsl=yes --with-system-iml=yes --with-system-libffi=yes --with-system-libpng=yes --with-system-mpc=yes --with-system-mpfr=yes --with-system-ncurses=yes --with-system-openblas=yes --with-system-pari=yes --with-system-pari_galdata=yes --with-system-pcre=yes --with-system-ppl=yes --with-system-python3=yes --with-system-r=yes --with-system-readline=yes --with-system-rw=yes --with-system-sqlite=yes --with-system-xz=yes --with-system-yasm=yes --with-system-zeromq=yes     *******
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /usr/sbin/mkdir -p
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking whether to enable maintainer-specific portions of Makefiles... yes
checking build system type... x86_64-pc-linux-musl
checking host system type... x86_64-pc-linux-musl
checking for a sed that does not truncate output... /usr/sbin/sed
checking for ar... yes
checking for m4... yes
checking for pkg-config... /usr/sbin/pkg-config
checking pkg-config is at least version 0.9.0... yes
checking for ranlib... yes
checking for strip... yes
checking for GNU or BSD tar... /usr/sbin/tar
checking for GNU make... /usr/sbin/make
checking for Python... /usr/sbin/python
checking for latex... no
configure: You do not have 'latex', which is recommended, but not
configure: required. Latex is only really used for building pdf
configure: documents and for %latex mode in the Sage notebook.
checking for perl... /usr/sbin/perl
checking for Perl version 5.8.0 or later... yes
checking whether a conda environment is active... no
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking whether gcc understands -c and -o together... yes
checking whether make supports the include directive... yes (GNU style)
checking dependency style of gcc... none
checking how to run the C preprocessor... gcc -E
checking for g++... g++
checking whether we are using the GNU C++ compiler... yes
checking whether g++ accepts -g... yes
checking dependency style of g++... none
checking for gfortran... gfortran
checking whether we are using the GNU Fortran compiler... yes
checking whether gfortran accepts -g... yes
checking for gcc... gcc
checking whether we are using the GNU Objective C compiler... no
checking whether gcc accepts -g... no
checking dependency style of gcc... none
checking for g++... g++
checking whether we are using the GNU Objective C++ compiler... no
checking whether g++ accepts -g... no
checking dependency style of g++... none
checking how to run the C++ preprocessor... g++ -E
checking for grep that handles long lines and -e... /usr/sbin/grep
checking for egrep... /usr/sbin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking complex.h usability... yes
checking complex.h presence... yes
checking for complex.h... yes
checking for sqrt in -lm... yes
-----------------------------------------------------------------------------
Checking whether SageMath should install SPKG gcc...
checking for C compiler vendor... gnu
checking whether g++ supports C++11 features with -std=gnu++11... yes
checking for gcc option to accept ISO C99... none needed
checking if gcc accepts -dumpversion option... yes
checking gcc version... 9.3.0
checking if g++ accepts -dumpversion option... yes
checking g++ version... 9.3.0
configure: will use system package and not install SPKG gcc
checking for the location of crti.o... /usr/lib/gcc/x86_64-linux-musl/9.3.0/../../../../lib
-----------------------------------------------------------------------------
Checking whether SageMath should install SPKG mpir...
checking gmp.h usability... yes
checking gmp.h presence... yes
checking for gmp.h... yes
checking gmpxx.h usability... yes
checking gmpxx.h presence... yes
checking for gmpxx.h... yes
checking for library containing __gmpq_cmp_z... -lgmp
configure: will use system package and not install SPKG mpir
checking absolute name of <gmp.h>... checking for gmp.h... (cached) yes
///usr/include/gmp.h
using GMP-compatible library from the system
-----------------------------------------------------------------------------
Checking whether SageMath should install SPKG gmp...
configure: will use system package and not install SPKG gmp
-----------------------------------------------------------------------------
Checking whether SageMath should install SPKG mpfr...
checking installing gmp/mpir? ... no
checking mpfr.h usability... yes
checking mpfr.h presence... yes
checking for mpfr.h... yes
checking for library containing mpfr_free_pool... -lmpfr
configure: will use system package and not install SPKG mpfr
using mpfr library from the system
-----------------------------------------------------------------------------
Checking whether SageMath should install SPKG ntl...
checking installing gmp/mpir? ... no
checking NTL/ZZ.h usability... no
checking NTL/ZZ.h presence... no
checking for NTL/ZZ.h... no
checking whether we can link a program using NTL... no
checking NTL version >= 10.3... no
configure: no suitable system package found for SPKG ntl
-----------------------------------------------------------------------------
Checking whether SageMath should install SPKG flint...
checking installing mpfr or ntl? ... yes; install flint as well
configure: no suitable system package found for SPKG flint
using Sage's flint SPKG
-----------------------------------------------------------------------------
Checking whether SageMath should install SPKG arb...
checking installing flint? ... yes; install arb as well
configure: no suitable system package found for SPKG arb
checking for Fortran flag needed to accept free-form source... -ffree-form
-----------------------------------------------------------------------------
Checking whether SageMath should install SPKG gfortran...
checking the version of gfortran... 9.3.0
configure: will use system package and not install SPKG gfortran
-----------------------------------------------------------------------------
Checking whether SageMath should install SPKG openblas...
checking BLAS library... openblas
checking whether any of gfortran is installed as or will be installed as SPKG... no
checking for openblas >= 0.2.20... yes
checking for cblas_dgemm... yes
checking for dgeqrf... no
checking for dgeqrf_... yes
checking for DGEQRF... no
checking for DGEQRF_... no
configure: will use system package and not install SPKG openblas
-----------------------------------------------------------------------------
Checking whether SageMath should install SPKG atlas...
configure: SPKG atlas is not required on this system
-----------------------------------------------------------------------------
Checking whether SageMath should install SPKG boost_cropped...
checking for boostlib >= 1.66.0 (106600)... configure: We could not detect the boost libraries (version 1.66.0 or higher). If you have a staged boost library (still not installed) please specify $BOOST_ROOT in your environment and do not give a PATH to --with-boost option.  If you are sure you have boost installed, then check your version number looking in <boost/version.hpp>. See http://randspringer.de/boost for more documentation.
configure: no suitable system package found for SPKG boost_cropped
-----------------------------------------------------------------------------
Checking whether SageMath should install SPKG boost...
checking whether any of boost_cropped is installed as or will be installed as SPKG... yes; install boost as well
configure: no suitable system package found for SPKG boost
-----------------------------------------------------------------------------
Checking whether SageMath should install SPKG zlib...
checking for inflateEnd in -lz... yes
checking zlib.h usability... yes
checking zlib.h presence... yes
checking for zlib.h... yes
checking for libpng >= 1.2... yes
configure: will use system package and not install SPKG zlib
-----------------------------------------------------------------------------
Checking whether SageMath should install SPKG libpng...
checking installing zlib? ... no
checking for libpng >= 1.2... yes
configure: will use system package and not install SPKG libpng
-----------------------------------------------------------------------------
Checking whether SageMath should install SPKG m4ri...
checking whether any of libpng is installed as or will be installed as SPKG... no
checking for m4ri >= 20140914... no
configure: no suitable system package found for SPKG m4ri
-----------------------------------------------------------------------------
Checking whether SageMath should install SPKG brial...
checking whether any of boost m4ri is installed as or will be installed as SPKG... yes; install brial as well
configure: no suitable system package found for SPKG brial
-----------------------------------------------------------------------------
Checking whether SageMath should install SPKG bzip2...
checking bzlib.h usability... yes
checking bzlib.h presence... yes
checking for bzlib.h... yes
checking for library containing BZ2_bzCompress... -lbz2
checking for bzip2... /usr/sbin/bzip2
configure: will use system package and not install SPKG bzip2
-----------------------------------------------------------------------------
Checking whether SageMath should install SPKG cbc...
checking whether any of atlas openblas zlib bzip2 is installed as or will be installed as SPKG... no
checking for cbc >= 2.9.4... no
configure: no suitable system package found for SPKG cbc
-----------------------------------------------------------------------------
Checking whether SageMath should install SPKG cddlib...
checking whether any of gmp mpir is installed as or will be installed as SPKG... no
checking for cddexec... no
checking for cddexec_gmp... no
checking for redcheck_gmp... no
checking for scdd_gmp... no
checking for scdd... no
checking for cdd.h... no
checking for library containing dd_abs... no
configure: no suitable system package found for SPKG cddlib
-----------------------------------------------------------------------------
Checking whether SageMath should install SPKG cliquer...
checking for library containing clique_unweighted_max_weight... no
configure: no suitable system package found for SPKG cliquer
-----------------------------------------------------------------------------
Checking whether SageMath should install SPKG cmake...
checking for cmake >= 3.4... 
configure: no suitable system package found for SPKG cmake
-----------------------------------------------------------------------------
Checking whether SageMath should install SPKG coxeter3...
checking for library coxeter3... no
configure: no suitable system package found for SPKG coxeter3
-----------------------------------------------------------------------------
Checking whether SageMath should install SPKG curl...
checking for curl 7.22... /bin/curl
checking for gawk... (cached) gawk
checking for curl-config... /usr/sbin/curl-config
checking for the version of libcurl... 7.72.0
checking for libcurl >= version 7.22... yes
checking whether libcurl is usable... yes
checking for curl_free... yes
checking whether programs linking to libcurl can be executed... yes
configure: will use system package and not install SPKG curl
-----------------------------------------------------------------------------
Checking whether SageMath should install SPKG ncurses...
checking for ncurses >= 6.0... no
checking ncurses.h usability... yes
checking ncurses.h presence... yes
checking for ncurses.h... yes
checking for library containing wresize... -lncurses
configure: will use system package and not install SPKG ncurses
-----------------------------------------------------------------------------
Checking whether SageMath should install SPKG readline...
checking Installing ncurses? ... No.
checking for readline >= 6.0... no
checking readline/readline.h usability... yes
checking readline/readline.h presence... yes
checking for readline/readline.h... yes
checking for library containing rl_bind_keyseq... -lreadline
configure: will use system package and not install SPKG readline
-----------------------------------------------------------------------------
Checking whether SageMath should install SPKG pari...
checking whether any of gmp mpir readline is installed as or will be installed as SPKG... no
checking for gp... /usr/sbin/gp
checking for gphelp... /usr/sbin/gphelp
checking whether gphelp has access to the documentation... yes
checking is pari_elldata installed? ... yes
checking is pari_galdata installed? ... yes
checking is pari_galpol installed? ... yes
checking is pari_seadata installed? ... no; cannot use system pari/GP without seadata package
configure: Install seadata package and reconfigure.
configure: Otherwise Sage will build its own pari/GP.
checking whether hyperellcharpoly bug is fixed... yes
checking whether bnfisunit bug of pari 2.11.3 is fixed... yes
configure: no suitable system package found for SPKG pari
-----------------------------------------------------------------------------
Checking whether SageMath should install SPKG eclib...
checking whether any of ntl pari flint is installed as or will be installed as SPKG... yes; install eclib as well
configure: no suitable system package found for SPKG eclib
-----------------------------------------------------------------------------
Checking whether SageMath should install SPKG ecm...
checking installing gmp/mpir? ... no. 
checking ecm.h usability... yes
checking ecm.h presence... yes
checking for ecm.h... yes
checking absolute name of <ecm.h>... checking for ecm.h... (cached) yes
///usr/include/ecm.h
checking for library containing ecm_factor... -lecm
checking for ecm... /usr/sbin/ecm
configure: will use system package and not install SPKG ecm
-----------------------------------------------------------------------------
Checking whether SageMath should install SPKG givaro...
checking whether any of gmp mpir is installed as or will be installed as SPKG... no
checking for givaro-config... no
configure: givaro-config not found. Installing givaro
configure: no suitable system package found for SPKG givaro
-----------------------------------------------------------------------------
Checking whether SageMath should install SPKG fflas_ffpack...
checking whether any of atlas givaro gmp mpir openblas is installed as or will be installed as SPKG... yes; install fflas_ffpack as well
configure: no suitable system package found for SPKG fflas_ffpack
checking whether C++ compiler accepts -mavx512f -mavx512vl -mavx512dq... yes
checking whether C++ compiler accepts -mfma... yes
checking whether C++ compiler accepts -mfma4... yes
-----------------------------------------------------------------------------
Checking whether SageMath should install SPKG flintqs...
checking for QuadraticSieve... no
configure: no suitable system package found for SPKG flintqs
-----------------------------------------------------------------------------
Checking whether SageMath should install SPKG fplll...
checking whether any of mpfr is installed as or will be installed as SPKG... no
checking for fplll >= 5.3... no
configure: no suitable system package found for SPKG fplll
-----------------------------------------------------------------------------
Checking whether SageMath should install SPKG freetype...
checking whether any of libpng is installed as or will be installed as SPKG... no
checking for freetype2 >= 16.1... yes
configure: will use system package and not install SPKG freetype
-----------------------------------------------------------------------------
Checking whether SageMath should install SPKG libatomic_ops...
checking for atomic_ops >= 7.6.2... no
configure: no suitable system package found for SPKG libatomic_ops
-----------------------------------------------------------------------------
Checking whether SageMath should install SPKG gc...
checking whether any of libatomic_ops is installed as or will be installed as SPKG... yes; install gc as well
configure: no suitable system package found for SPKG gc
-----------------------------------------------------------------------------
Checking whether SageMath should install SPKG gf2x...
checking for gf2x >= 1.2... no
checking gf2x.h usability... no
checking gf2x.h presence... no
checking for gf2x.h... no
checking for library containing gf2x_mul_r... no
configure: no suitable system package found for SPKG gf2x
-----------------------------------------------------------------------------
Checking whether SageMath should install SPKG gfan...
checking for gfan >= 0.6.2... 
configure: no suitable system package found for SPKG gfan
-----------------------------------------------------------------------------
Checking whether SageMath should install SPKG giac...
checking whether any of pari is installed as or will be installed as SPKG... yes; install giac as well
configure: no suitable system package found for SPKG giac
-----------------------------------------------------------------------------
Checking whether SageMath should install SPKG git...
checking for git... /bin/git
configure: will use system package and not install SPKG git
-----------------------------------------------------------------------------
Checking whether SageMath should install SPKG glpk...
checking whether any of gmp mpir zlib is installed as or will be installed as SPKG... no
checking for glpsol... /usr/sbin/glpsol
checking glpk.h usability... yes
checking glpk.h presence... yes
checking for glpk.h... yes
checking for library containing glp_config... -lglpk
yes. Use system's glpk
configure: will use system package and not install SPKG glpk
using glpk from the system
-----------------------------------------------------------------------------
Checking whether SageMath should install SPKG gp2c...
checking whether any of pari is installed as or will be installed as SPKG... yes; install gp2c as well
configure: pari.cfg is $SAGE_LOCAL/lib/pari/pari.cfg
-----------------------------------------------------------------------------
Checking whether SageMath should install SPKG gsl...
checking whether any of atlas openblas is installed as or will be installed as SPKG... no
checking for gsl >= $2.4... yes
configure: will use system package and not install SPKG gsl
checking for ld used by gcc... /usr/sbin/ld
checking if the linker (/usr/sbin/ld) is GNU ld... yes
checking for shared library run path origin... done
checking 32-bit host C ABI... no
checking for ELF binary format... yes
checking for the common suffixes of directories in the library search path... lib,lib,lib64
checking for iconv... yes
checking for working iconv... yes
checking for iconv declaration... 
         extern size_t iconv (iconv_t cd, char * *inbuf, size_t *inbytesleft, char * *outbuf, size_t *outbytesleft);
-----------------------------------------------------------------------------
Checking whether SageMath should install SPKG iconv...
configure: will use system package and not install SPKG iconv
-----------------------------------------------------------------------------
Checking whether SageMath should install SPKG iml...
checking whether any of gmp mpir openblas is installed as or will be installed as SPKG... no
checking for iml.h... no
configure: no suitable system package found for SPKG iml
-----------------------------------------------------------------------------
Checking whether SageMath should install SPKG isl...
checking installing gmp/mpir? ... no
checking for isl >= 0.20... no
configure: no suitable system package found for SPKG isl
-----------------------------------------------------------------------------
Checking whether SageMath should install SPKG lcalc...
checking whether any of pari mpfr is installed as or will be installed as SPKG... yes; install lcalc as well
configure: no suitable system package found for SPKG lcalc
-----------------------------------------------------------------------------
Checking whether SageMath should install SPKG libbraiding...
checking if we can link against libbraiding... no
configure: no suitable system package found for SPKG libbraiding
-----------------------------------------------------------------------------
Checking whether SageMath should install SPKG libffi...
checking for libffi... yes
configure: will use system package and not install SPKG libffi
-----------------------------------------------------------------------------
Checking whether SageMath should install SPKG libgd...
checking Installing freetype? ... checking Installing libpng? ... No.
checking for gdlib >= 2.1... no
configure: no suitable system package found for SPKG libgd
-----------------------------------------------------------------------------
Checking whether SageMath should install SPKG nauty...
checking for geng... no
checking for nauty-geng... no
configure: no suitable system package found for SPKG nauty
-----------------------------------------------------------------------------
Checking whether SageMath should install SPKG libnauty...
checking whether any of nauty is installed as or will be installed as SPKG... yes; install libnauty as well
configure: no suitable system package found for SPKG libnauty
-----------------------------------------------------------------------------
Checking whether SageMath should install SPKG libsemigroups...
checking for libsemigroups >= 0.6.7... no
configure: no suitable system package found for SPKG libsemigroups
-----------------------------------------------------------------------------
Checking whether SageMath should install SPKG lrcalc...
checking for lrcalc/schublib.h... no
configure: no suitable system package found for SPKG lrcalc
-----------------------------------------------------------------------------
Checking whether SageMath should install SPKG m4rie...
checking whether any of m4ri is installed as or will be installed as SPKG... yes; install m4rie as well
configure: no suitable system package found for SPKG m4rie
-----------------------------------------------------------------------------
Checking whether SageMath should install SPKG mpc...
checking installing mpfr? ... no
checking mpc.h usability... yes
checking mpc.h presence... yes
checking for mpc.h... yes
checking for library containing mpc_cmp_abs... -lmpc
configure: will use system package and not install SPKG mpc
using mpc library from the system
-----------------------------------------------------------------------------
Checking whether SageMath should install SPKG mpfi...
checking installing mpfr? ... no
checking mpfi.h usability... no
checking mpfi.h presence... no
checking for mpfi.h... no
checking for library containing mpfi_diam_abs... no
configure: no suitable system package found for SPKG mpfi
-----------------------------------------------------------------------------
Checking whether SageMath should install SPKG ninja_build...
checking for ninja >= 1.7.2... 
configure: no suitable system package found for SPKG ninja_build
-----------------------------------------------------------------------------
Checking whether SageMath should install SPKG openssl...
checking for pkg-config... /usr/sbin/pkg-config
checking whether compiling and linking against OpenSSL works... yes
configure: will use system package and not install SPKG openssl
-----------------------------------------------------------------------------
Checking whether SageMath should install SPKG palp...
checking for poly.x... no
checking for poly-4d.x... no
checking for poly-5d.x... no
checking for poly-6d.x... no
checking for poly-11d.x... no
checking for class.x... no
checking for class-4d.x... no
checking for class-5d.x... no
checking for class-6d.x... no
checking for class-11d.x... no
checking for nef.x... no
checking for nef-4d.x... no
checking for nef-5d.x... no
checking for nef-6d.x... no
checking for nef-11d.x... no
checking for cws.x... no
checking for cws-4d.x... no
checking for cws-5d.x... no
checking for cws-6d.x... no
checking for cws-11d.x... no
configure: no suitable system package found for SPKG palp
-----------------------------------------------------------------------------
Checking whether SageMath should install SPKG pandoc...
checking for pandoc... no
configure: no suitable system package found for SPKG pandoc
-----------------------------------------------------------------------------
Checking whether SageMath should install SPKG pari_elldata...
checking installing pari? ... yes; install pari_elldata as well
configure: no suitable system package found for SPKG pari_elldata
-----------------------------------------------------------------------------
Checking whether SageMath should install SPKG pari_galdata...
checking installing pari? ... yes; install pari_galdata as well
configure: no suitable system package found for SPKG pari_galdata
-----------------------------------------------------------------------------
Checking whether SageMath should install SPKG pari_galpol...
checking installing pari? ... yes; install pari_galpol as well
configure: no suitable system package found for SPKG pari_galpol
-----------------------------------------------------------------------------
Checking whether SageMath should install SPKG pari_nftables...
checking installing pari? ... yes; install pari_nftables as well
configure: no suitable system package found for SPKG pari_nftables
-----------------------------------------------------------------------------
Checking whether SageMath should install SPKG pari_seadata...
checking installing pari? ... yes; install pari_seadata as well
configure: no suitable system package found for SPKG pari_seadata
-----------------------------------------------------------------------------
Checking whether SageMath should install SPKG pari_seadata_small...
checking installing pari? ... yes; install pari_seadata_small as well
configure: no suitable system package found for SPKG pari_seadata_small
-----------------------------------------------------------------------------
Checking whether SageMath should install SPKG patch...
checking for GNU patch >= 2.7.0... /bin/patch
configure: will use system package and not install SPKG patch
-----------------------------------------------------------------------------
Checking whether SageMath should install SPKG pcre...
checking installing bzip2? ... no
checking for libpcre >= 8.39 libpcreposix libpcrecpp... yes
configure: will use system package and not install SPKG pcre
-----------------------------------------------------------------------------
Checking whether SageMath should install SPKG perl_cpan_polymake_prereq...
checking for perl module XML::Writer... no
checking for perl module XML::LibXML... no
checking for perl module XML::LibXSLT... no
checking for perl module File::Slurp... no
checking for perl module JSON... no
checking for perl module SVG... no
checking for perl module MongoDB... no
configure: no suitable system package found for SPKG perl_cpan_polymake_prereq
-----------------------------------------------------------------------------
Checking whether SageMath should install SPKG perl_term_readline_gnu...
checking for perl module Term::ReadLine... ok
checking Term::ReadLine module...... non-GNU
configure: no suitable system package found for SPKG perl_term_readline_gnu
-----------------------------------------------------------------------------
Checking whether SageMath should install SPKG pkgconf...
checking for pkg-config >= 0.29... /bin/pkg-config
using pkg-config from the system
configure: will use system package and not install SPKG pkgconf
-----------------------------------------------------------------------------
Checking whether SageMath should install SPKG planarity...
checking planarity/planarity.h usability... no
checking planarity/planarity.h presence... no
checking for planarity/planarity.h... no
configure: no suitable system package found for SPKG planarity
-----------------------------------------------------------------------------
Checking whether SageMath should install SPKG ppl...
checking whether any of glpk gmp mpir is installed as or will be installed as SPKG... no
checking for ppl-config... /usr/sbin/ppl-config
checking for the Parma Polyhedra Library, version >= 1.2... yes
configure: will use system package and not install SPKG ppl
-----------------------------------------------------------------------------
Checking whether SageMath should install SPKG sqlite...
checking libsqlite3 >= sqlite3_min_version... yes
configure: will use system package and not install SPKG sqlite
-----------------------------------------------------------------------------
Checking whether SageMath should install SPKG xz...
checking for lzma_raw_decoder in -llzma... yes
checking lzma.h usability... yes
checking lzma.h presence... yes
checking for lzma.h... yes
checking for xz >= 4.999.0... /bin/xz
configure: will use system package and not install SPKG xz
-----------------------------------------------------------------------------
Checking whether SageMath should install SPKG python3...
checking whether any of sqlite libpng bzip2 xz libffi is installed as or will be installed as SPKG... no
checking for python3 >= 3.7, < 3.9 with modules sqlite3, ctypes, math, hashlib, crypt, readline, socket, zlib, distutils.core... 
checking ... whether /usr/sbin/python3.8 is good... yes
checking for python3 >= 3.6, < 3.9 with modules sqlite3, ctypes, math, hashlib, crypt, readline, socket, zlib, distutils.core... /usr/sbin/python3.8
configure: will use system package and not install SPKG python3
-----------------------------------------------------------------------------
Checking whether SageMath should install SPKG r...
checking whether any of atlas openblas iconv readline bzip2 xz pcre curl is installed as or will be installed as SPKG... no
checking for libR >= $3.4.4... yes
checking for R... /usr/sbin/R
configure: will use system package and not install SPKG r
-----------------------------------------------------------------------------
Checking whether SageMath should install SPKG rw...
checking rw.h usability... no
checking rw.h presence... no
checking for rw.h... no
checking for library containing calculate_level... no
configure: no suitable system package found for SPKG rw
-----------------------------------------------------------------------------
Checking whether SageMath should install SPKG suitesparse...
checking whether any of openblas is installed as or will be installed as SPKG... no
checking for library containing cholmod_speye... no
configure: no suitable system package found for SPKG suitesparse
-----------------------------------------------------------------------------
Checking whether SageMath should install SPKG symmetrica...
checking symmetrica/def.h usability... no
checking symmetrica/def.h presence... no
checking for symmetrica/def.h... no
configure: no suitable system package found for SPKG symmetrica
-----------------------------------------------------------------------------
Checking whether SageMath should install SPKG sympow...
checking for sympow... no
configure: no suitable system package found for SPKG sympow
-----------------------------------------------------------------------------
Checking whether SageMath should install SPKG tachyon...
checking for tachyon... no
configure: tachyon not found. Installing tachyon
configure: no suitable system package found for SPKG tachyon
-----------------------------------------------------------------------------
Checking whether SageMath should install SPKG yasm...
checking for yasm supporting the adox instruction... /bin/yasm
configure: will use system package and not install SPKG yasm
-----------------------------------------------------------------------------
Checking whether SageMath should install SPKG zeromq...
checking zmq.h usability... yes
checking zmq.h presence... yes
checking for zmq.h... yes
checking for ZMQ version >= 4.2.5... yes
configure: will use system package and not install SPKG zeromq
-----------------------------------------------------------------------------
Checking whether SageMath should install SPKG zn_poly...
checking whether any of gmp mpir is installed as or will be installed as SPKG... no
checking zn_poly/zn_poly.h usability... no
checking zn_poly/zn_poly.h presence... no
checking for zn_poly/zn_poly.h... no
configure: no suitable system package found for SPKG zn_poly
## ----------------------------------------------------------------------- ##
## Build status for each package:                                          ##
## ----------------------------------------------------------------------- ##
4ti2-1.6.7.p0:                               does not support check for system package; optional, use "./configure --enable-4ti2" to install
alabaster-0.7.12:                            does not support check for system package; will be installed as an SPKG
appnope-0.1.0.p0:                            does not support check for system package; will be installed as an SPKG
arb-2.16.0.p0:                               no suitable system package; will be installed as an SPKG
atlas-3.10.2.p3:                             not required on your platform; SPKG will not be installed
attrs-19.3.0:                                does not support check for system package; will be installed as an SPKG
awali-1.0.2-190218:                          does not support check for system package; experimental, use "./configure --enable-awali" to install
babel-2.6.0:                                 does not support check for system package; will be installed as an SPKG
backcall-0.1.0:                              does not support check for system package; will be installed as an SPKG
barvinok-0.41.1:                             does not support check for system package; optional, use "./configure --enable-barvinok" to install
beautifulsoup4-none:                         does not support check for system package; optional pip package; use "./sage -i beautifulsoup4" to install
benzene-20130630:                            does not support check for system package; optional, use "./configure --enable-benzene" to install
biopython-none:                              does not support check for system package; optional pip package; use "./sage -i biopython" to install
bleach-3.1.5:                                does not support check for system package; will be installed as an SPKG
bliss-0.73+debian-1+sage-2016-08-02.p0:      does not support check for system package; optional, use "./configure --enable-bliss" to install
boost-1_66_0:                                no suitable system package; optional, use "./configure --enable-boost" to install
boost_cropped-1.66.0.p0:                     no suitable system package; will be installed as an SPKG
brial-1.2.8:                                 no suitable system package; will be installed as an SPKG
buckygen-1.1:                                does not support check for system package; optional, use "./configure --enable-buckygen" to install
bzip2-1.0.6-20150304.p0:                     using system package; SPKG will not be installed
cbc-2.9.4.p0:                                no suitable system package; optional, use "./configure --enable-cbc" to install
ccache-3.3.4:                                does not support check for system package; optional, use "./configure --enable-ccache" to install
cddlib-0.94j:                                no suitable system package; will be installed as an SPKG
certifi-2020.6.20:                           does not support check for system package; will be installed as an SPKG
cffi-1.14.0:                                 does not support check for system package; will be installed as an SPKG
cliquer-1.21.p4:                             no suitable system package; will be installed as an SPKG
cmake-3.18.2:                                no suitable system package; optional, use "./configure --enable-cmake" to install
cocoalib-0.99564:                            does not support check for system package; experimental, use "./configure --enable-cocoalib" to install
combinatorial_designs-20140630.p0:           does not support check for system package; will be installed as an SPKG
compilerwrapper-1.2:                         does not support check for system package; experimental, use "./configure --enable-compilerwrapper" to install
configure-85a3dc5389b6670934938f705a9366b4ba8573b8:does not support check for system package; came preinstalled with the SageMath tarball
conway_polynomials-0.5:                      does not support check for system package; will be installed as an SPKG
coxeter3-8ac9c71723c8ca57a836d6381aed125261e44e9e.p0:no suitable system package; optional, use "./configure --enable-coxeter3" to install
cryptominisat-5.6.8:                         does not support check for system package; optional, use "./configure --enable-cryptominisat" to install
csdp-6.2.p0:                                 does not support check for system package; optional, use "./configure --enable-csdp" to install
cunningham_tables-1.0:                       does not support check for system package; optional, use "./configure --enable-cunningham_tables" to install
curl-7.62.0.p0:                              using system package; SPKG will not be installed
cvxopt-1.2.5:                                does not support check for system package; will be installed as an SPKG
cycler-0.10.0.p0:                            does not support check for system package; will be installed as an SPKG
cypari-2.1.1:                                does not support check for system package; will be installed as an SPKG
cysignals-1.10.2:                            does not support check for system package; will be installed as an SPKG
cython-0.29.21:                              does not support check for system package; will be installed as an SPKG
d3js-3.4.8:                                  does not support check for system package; optional, use "./configure --enable-d3js" to install
database_cremona_ellcurve-20190911:          does not support check for system package; optional, use "./configure --enable-database_cremona_ellcurve" to install
database_jones_numfield-4:                   does not support check for system package; optional, use "./configure --enable-database_jones_numfield" to install
database_kohel-20160724:                     does not support check for system package; optional, use "./configure --enable-database_kohel" to install
database_mutation_class-1.0:                 does not support check for system package; optional, use "./configure --enable-database_mutation_class" to install
database_odlyzko_zeta-20061209:              does not support check for system package; optional, use "./configure --enable-database_odlyzko_zeta" to install
database_stein_watkins-20110713:             does not support check for system package; optional, use "./configure --enable-database_stein_watkins" to install
database_stein_watkins_mini-20070827:        does not support check for system package; optional, use "./configure --enable-database_stein_watkins_mini" to install
database_symbolic_data-20070206:             does not support check for system package; optional, use "./configure --enable-database_symbolic_data" to install
dateutil-2.8.1:                              does not support check for system package; will be installed as an SPKG
decorator-4.4.0:                             does not support check for system package; will be installed as an SPKG
deformation-d05941b.p0:                      does not support check for system package; optional, use "./configure --enable-deformation" to install
defusedxml-0.6.0:                            does not support check for system package; will be installed as an SPKG
docutils-0.14:                               does not support check for system package; will be installed as an SPKG
dot2tex-2.11.3.p0:                           does not support check for system package; optional, use "./configure --enable-dot2tex" to install
e_antic-0.1.8:                               does not support check for system package; optional, use "./configure --enable-e_antic" to install
ecl-20.4.24.p1:                              does not support check for system package; will be installed as an SPKG
eclib-20190909:                              no suitable system package; will be installed as an SPKG
ecm-7.0.4.p2:                                using system package; SPKG will not be installed
elliptic_curves-0.8.1:                       does not support check for system package; will be installed as an SPKG
entrypoints-0.3:                             does not support check for system package; will be installed as an SPKG
fflas_ffpack-2.4.3:                          no suitable system package; will be installed as an SPKG
flint-2.5.2.p5:                              no suitable system package; will be installed as an SPKG
flintqs-1.0.p0:                              no suitable system package; will be installed as an SPKG
fplll-5.3.3:                                 no suitable system package; will be installed as an SPKG
fpylll-0.5.1dev:                             does not support check for system package; will be installed as an SPKG
freetype-2.10.1:                             using system package; SPKG will not be installed
fricas-1.3.6:                                does not support check for system package; optional, use "./configure --enable-fricas" to install
frobby-0.9.0.p2:                             does not support check for system package; optional, use "./configure --enable-frobby" to install
gambit-15.1.1.p0:                            does not support check for system package; experimental, use "./configure --enable-gambit" to install
gap-4.10.2.p1:                               does not support check for system package; will be installed as an SPKG
gap3-04jul17:                                does not support check for system package; experimental, use "./configure --enable-gap3" to install
gap_jupyter-0.9:                             does not support check for system package; optional, use "./configure --enable-gap_jupyter" to install
gap_packages-4.10.2.p1:                      does not support check for system package; optional, use "./configure --enable-gap_packages" to install
gc-8.0.4:                                    no suitable system package; will be installed as an SPKG
gcc-9.2.0:                                   using system package; SPKG will not be installed
gdb-8.2:                                     does not support check for system package; experimental, use "./configure --enable-gdb" to install
gf2x-1.3.0:                                  no suitable system package; will be installed as an SPKG
gfan-0.6.2.p1:                               no suitable system package; will be installed as an SPKG
gfortran-9.2.0:                              using system package; SPKG will not be installed
giac-1.5.0.87p2.p1:                          no suitable system package; will be installed as an SPKG
git-2.11.0:                                  using system package; SPKG will not be installed
git_trac-20160625.p0:                        does not support check for system package; optional, use "./configure --enable-git_trac" to install
givaro-4.1.1:                                no suitable system package; will be installed as an SPKG
glpk-4.65.p0:                                using system package; SPKG will not be installed
glucose-4.1:                                 does not support check for system package; optional, use "./configure --enable-glucose" to install
gmp-6.1.2:                                   using system package; SPKG will not be installed
gmpy2-2.1.0b1:                               does not support check for system package; will be installed as an SPKG
gp2c-0.0.10.p0:                              no suitable system package; optional, use "./configure --enable-gp2c" to install
graphs-20161026.p0:                          does not support check for system package; will be installed as an SPKG
gsl-2.6:                                     using system package; SPKG will not be installed
html5lib-1.0.1:                              does not support check for system package; will be installed as an SPKG
iconv-1.15:                                  using system package; SPKG will not be installed
igraph-0.7.1999.p0:                          does not support check for system package; optional, use "./configure --enable-igraph" to install
imagesize-1.1.0:                             does not support check for system package; will be installed as an SPKG
iml-1.0.4p1.p2:                              no suitable system package; will be installed as an SPKG
importlib_metadata-1.7.0:                    does not support check for system package; will be installed as an SPKG
ipykernel-5.2.1:                             does not support check for system package; will be installed as an SPKG
ipython-7.13.0:                              does not support check for system package; will be installed as an SPKG
ipython_genutils-0.2.0:                      does not support check for system package; will be installed as an SPKG
ipywidgets-7.5.1:                            does not support check for system package; will be installed as an SPKG
isl-0.20:                                    no suitable system package; optional, use "./configure --enable-isl" to install
itsdangerous-1.1.0:                          does not support check for system package; will be installed as an SPKG
jedi-0.17.0:                                 does not support check for system package; will be installed as an SPKG
jinja2-2.11.2:                               does not support check for system package; will be installed as an SPKG
jmol-14.29.52:                               does not support check for system package; will be installed as an SPKG
jsonschema-3.2.0:                            does not support check for system package; will be installed as an SPKG
jupymake-0.9:                                does not support check for system package; optional, use "./configure --enable-jupymake" to install
jupyter_client-6.1.6:                        does not support check for system package; will be installed as an SPKG
jupyter_core-4.6.3:                          does not support check for system package; will be installed as an SPKG
jupyterlab-none:                             does not support check for system package; optional pip package; use "./sage -i jupyterlab" to install
jupyterlab_widgets-2.0:                      does not support check for system package; optional, use "./configure --enable-jupyterlab_widgets" to install
kenzo-1.1.9:                                 does not support check for system package; optional, use "./configure --enable-kenzo" to install
kiwisolver-1.0.1:                            does not support check for system package; will be installed as an SPKG
latte_int-1.7.5.p0:                          does not support check for system package; optional, use "./configure --enable-latte_int" to install
lcalc-1.23.p19:                              no suitable system package; will be installed as an SPKG
libatomic_ops-7.6.10:                        no suitable system package; will be installed as an SPKG
libbraiding-1.0.p0:                          no suitable system package; will be installed as an SPKG
libffi-3.2.1:                                using system package; SPKG will not be installed
libgd-2.1.1.1.p1:                            no suitable system package; will be installed as an SPKG
libhomfly-1.02r6:                            does not support check for system package; will be installed as an SPKG
libnauty-none:                               no suitable system package; optional, use "./configure --enable-libnauty" to install
libogg-1.3.1.p0:                             does not support check for system package; optional, use "./configure --enable-libogg" to install
libpng-1.6.29.p1:                            using system package; SPKG will not be installed
libsemigroups-0.6.7:                         no suitable system package; optional, use "./configure --enable-libsemigroups" to install
libtheora-1.1.1:                             does not support check for system package; experimental, use "./configure --enable-libtheora" to install
lidia-2.3.0+latte-patches-2019-05-02:        does not support check for system package; optional, use "./configure --enable-lidia" to install
lie-2.2.2:                                   does not support check for system package; experimental, use "./configure --enable-lie" to install
linbox-1.6.3.p1:                             does not support check for system package; will be installed as an SPKG
lrcalc-1.2.p1:                               no suitable system package; will be installed as an SPKG
lrslib-062+autotools-2017-03-03.p1:          does not support check for system package; optional, use "./configure --enable-lrslib" to install
m4ri-20200115:                               no suitable system package; will be installed as an SPKG
m4rie-20200115:                              no suitable system package; will be installed as an SPKG
markupsafe-1.1.0:                            does not support check for system package; will be installed as an SPKG
mathjax-2.7.4.p0:                            does not support check for system package; will be installed as an SPKG
matplotlib-3.3.1:                            does not support check for system package; will be installed as an SPKG
maxima-5.44.0:                               does not support check for system package; will be installed as an SPKG
mcqd-1.0.p0:                                 does not support check for system package; optional, use "./configure --enable-mcqd" to install
meataxe-1.0.p0:                              does not support check for system package; optional, use "./configure --enable-meataxe" to install
mistune-0.8.4:                               does not support check for system package; will be installed as an SPKG
modular_decomposition-20100607:              does not support check for system package; experimental, use "./configure --enable-modular_decomposition" to install
mpc-1.1.0:                                   using system package; SPKG will not be installed
mpfi-1.5.2:                                  no suitable system package; will be installed as an SPKG
mpfr-4.0.1.p0:                               using system package; SPKG will not be installed
mpfrcx-0.5:                                  does not support check for system package; optional, use "./configure --enable-mpfrcx" to install
mpir-3.0.0-644faf502c56f97d9accd301965fc57d6ec70868.p0:using system package; SPKG will not be installed
mpmath-1.1.0:                                does not support check for system package; will be installed as an SPKG
nauty-27r1.p1:                               no suitable system package; will be installed as an SPKG
nbconvert-5.6.1:                             does not support check for system package; will be installed as an SPKG
nbformat-5.0.7:                              does not support check for system package; will be installed as an SPKG
ncurses-6.0.p0:                              using system package; SPKG will not be installed
networkx-2.4:                                does not support check for system package; will be installed as an SPKG
nibabel-none:                                does not support check for system package; optional pip package; use "./sage -i nibabel" to install
ninja_build-1.8.2:                           no suitable system package; optional, use "./configure --enable-ninja_build" to install
nodeenv-none:                                does not support check for system package; optional pip package; use "./sage -i nodeenv" to install
nodejs-12.18.3:                              does not support check for system package; optional, use "./configure --enable-nodejs" to install
normaliz-3.8.8:                              does not support check for system package; optional, use "./configure --enable-normaliz" to install
nose-1.3.7:                                  does not support check for system package; will be installed as an SPKG
notebook-6.1.1:                              does not support check for system package; will be installed as an SPKG
notedown-1.5.1:                              does not support check for system package; optional, use "./configure --enable-notedown" to install
ntl-11.4.3:                                  no suitable system package; will be installed as an SPKG
numpy-1.19.1:                                does not support check for system package; will be installed as an SPKG
openblas-0.3.9:                              using system package; SPKG will not be installed
openssl-1.1.1g:                              using system package; SPKG will not be installed
p_group_cohomology-3.3:                      does not support check for system package; optional, use "./configure --enable-p_group_cohomology" to install
packaging-18.0:                              does not support check for system package; will be installed as an SPKG
palp-2.11:                                   no suitable system package; will be installed as an SPKG
pandoc-none:                                 no suitable system package; optional, use "./configure --enable-pandoc" to install
pandoc_attributes-8bc82f6d:                  does not support check for system package; optional, use "./configure --enable-pandoc_attributes" to install
pandocfilters-1.4.2:                         does not support check for system package; will be installed as an SPKG
pari-2.11.4.p0:                              no suitable system package; will be installed as an SPKG
pari_elldata-20161017:                       no suitable system package; optional, use "./configure --enable-pari_elldata" to install
pari_galdata-20080411.p0:                    no suitable system package; will be installed as an SPKG
pari_galpol-20180625:                        no suitable system package; optional, use "./configure --enable-pari_galpol" to install
pari_jupyter-1.3.2:                          does not support check for system package; optional, use "./configure --enable-pari_jupyter" to install
pari_nftables-20080929:                      no suitable system package; optional, use "./configure --enable-pari_nftables" to install
pari_seadata-20090618:                       no suitable system package; optional, use "./configure --enable-pari_seadata" to install
pari_seadata_small-20090618.p0:              no suitable system package; will be installed as an SPKG
parso-0.7.0:                                 does not support check for system package; will be installed as an SPKG
patch-2.7.5:                                 using system package; SPKG will not be installed
pathpy-7.1.p0:                               does not support check for system package; will be installed as an SPKG
pcre-8.40.p2:                                using system package; SPKG will not be installed
perl_cpan_polymake_prereq-none:              no suitable system package; optional, use "./configure --enable-perl_cpan_polymake_prereq" to install
perl_term_readline_gnu-1.35:                 no suitable system package; experimental, use "./configure --enable-perl_term_readline_gnu" to install
pexpect-4.8.0:                               does not support check for system package; will be installed as an SPKG
pickleshare-0.7.5:                           does not support check for system package; will be installed as an SPKG
pillow-7.2.0:                                does not support check for system package; will be installed as an SPKG
pip-20.2.3:                                  does not support check for system package; will be installed as an SPKG
pkgconf-0.9.7.p2:                            using system package; SPKG will not be installed
pkgconfig-1.5.1:                             does not support check for system package; will be installed as an SPKG
planarity-3.0.0.5.p0:                        no suitable system package; will be installed as an SPKG
plantri-4.5:                                 does not support check for system package; optional, use "./configure --enable-plantri" to install
polylib-5.22.5:                              does not support check for system package; optional, use "./configure --enable-polylib" to install
polymake-3.4:                                does not support check for system package; experimental, use "./configure --enable-polymake" to install
polytopes_db-20170220.p0:                    does not support check for system package; will be installed as an SPKG
polytopes_db_4d-1.0:                         does not support check for system package; optional, use "./configure --enable-polytopes_db_4d" to install
ppl-1.2.p1:                                  using system package; SPKG will not be installed
pplpy-0.8.4:                                 does not support check for system package; will be installed as an SPKG
primecount-5.1:                              does not support check for system package; optional, use "./configure --enable-primecount" to install
prometheus_client-0.8.0:                     does not support check for system package; will be installed as an SPKG
prompt_toolkit-3.0.5:                        does not support check for system package; will be installed as an SPKG
psutil-5.2.0.p2:                             does not support check for system package; will be installed as an SPKG
ptyprocess-0.5.1.p0:                         does not support check for system package; will be installed as an SPKG
pybind11-2.5.0:                              does not support check for system package; will be installed as an SPKG
pybtex-none:                                 does not support check for system package; optional pip package; use "./sage -i pybtex" to install
pycosat-0.6.3:                               does not support check for system package; optional, use "./configure --enable-pycosat" to install
pycparser-2.20:                              does not support check for system package; will be installed as an SPKG
pycygwin-0.1:                                does not support check for system package; will be installed as an SPKG
pyflakes-none:                               does not support check for system package; optional pip package; use "./sage -i pyflakes" to install
pygments-2.3.1.p0:                           does not support check for system package; will be installed as an SPKG
pynac-0.7.26.sage-2020-04-03.p0:             does not support check for system package; will be installed as an SPKG
pynormaliz-2.12:                             does not support check for system package; optional, use "./configure --enable-pynormaliz" to install
pyopenssl-none:                              does not support check for system package; optional pip package; use "./sage -i pyopenssl" to install
pyparsing-2.3.0:                             does not support check for system package; will be installed as an SPKG
pyrsistent-0.16.0:                           does not support check for system package; will be installed as an SPKG
pysingular-0.9.5:                            does not support check for system package; optional, use "./configure --enable-pysingular" to install
pytest-none:                                 does not support check for system package; optional pip package; use "./sage -i pytest" to install
python3-3.8.5:                               using system package; SPKG will not be installed
python_igraph-0.7.1999:                      does not support check for system package; optional, use "./configure --enable-python_igraph" to install
python_openid-2.2.5.p0:                      does not support check for system package; optional, use "./configure --enable-python_openid" to install
pytz-2020.1:                                 does not support check for system package; will be installed as an SPKG
pyx-none:                                    does not support check for system package; optional pip package; use "./sage -i pyx" to install
pyzmq-19.0.2:                                does not support check for system package; will be installed as an SPKG
qepcad-B.1.72:                               does not support check for system package; experimental, use "./configure --enable-qepcad" to install
qhull-2015-src-7.2.0.p1:                     does not support check for system package; optional, use "./configure --enable-qhull" to install
r-3.6.3:                                     using system package; SPKG will not be installed
r_jupyter-none:                              does not support check for system package; optional, use "./configure --enable-r_jupyter" to install
ratpoints-2.1.3.p5:                          does not support check for system package; will be installed as an SPKG
readline-6.3.008.p0:                         using system package; SPKG will not be installed
requests-2.13.0:                             does not support check for system package; will be installed as an SPKG
rpy2-3.3.5:                                  does not support check for system package; will be installed as an SPKG
rst2ipynb-0.2.2.p0:                          does not support check for system package; optional, use "./configure --enable-rst2ipynb" to install
rubiks-20070912.p21:                         does not support check for system package; optional, use "./configure --enable-rubiks" to install
rw-0.7.p0:                                   no suitable system package; will be installed as an SPKG
saclib-2.2.7:                                does not support check for system package; optional, use "./configure --enable-saclib" to install
sage_conf-none:                              does not support check for system package; will be installed as an SPKG
sage_numerical_backends_coin-9.0b12:         does not support check for system package; optional, use "./configure --enable-sage_numerical_backends_coin" to install
sage_numerical_backends_cplex-9.0b12:        does not support check for system package; optional, use "./configure --enable-sage_numerical_backends_cplex" to install
sage_numerical_backends_gurobi-9.0.0:        does not support check for system package; optional, use "./configure --enable-sage_numerical_backends_gurobi" to install
sage_sws2rst-none:                           does not support check for system package; optional, use "./configure --enable-sage_sws2rst" to install
sagelib-9.2.beta13:                          does not support check for system package; will be installed as an SPKG
sagenb_export-3.3:                           does not support check for system package; will be installed as an SPKG
sagetex-3.5:                                 does not support check for system package; will be installed as an SPKG
scandir-1.9.0:                               does not support check for system package; will be installed as an SPKG
scipoptsuite-5.0.1:                          does not support check for system package; experimental, use "./configure --enable-scipoptsuite" to install
scipy-1.5.2:                                 does not support check for system package; will be installed as an SPKG
send2trash-1.5.0:                            does not support check for system package; will be installed as an SPKG
setuptools-49.6.0:                           does not support check for system package; will be installed as an SPKG
setuptools_scm-4.1.2:                        does not support check for system package; will be installed as an SPKG
simplegeneric-0.8.1.p0:                      does not support check for system package; will be installed as an SPKG
singular-4.1.1p2.p0:                         does not support check for system package; will be installed as an SPKG
singular_jupyter-0.9.7:                      does not support check for system package; optional, use "./configure --enable-singular_jupyter" to install
sip-4.18:                                    does not support check for system package; optional, use "./configure --enable-sip" to install
sirocco-2.0.2:                               does not support check for system package; optional, use "./configure --enable-sirocco" to install
six-1.15.0:                                  does not support check for system package; will be installed as an SPKG
snowballstemmer-1.2.1.p0:                    does not support check for system package; will be installed as an SPKG
speaklater-1.3.p0:                           does not support check for system package; optional, use "./configure --enable-speaklater" to install
sphinx-3.1.2.p0:                             does not support check for system package; will be installed as an SPKG
sphinxcontrib_applehelp-1.0.2:               does not support check for system package; will be installed as an SPKG
sphinxcontrib_devhelp-1.0.2:                 does not support check for system package; will be installed as an SPKG
sphinxcontrib_htmlhelp-1.0.3:                does not support check for system package; will be installed as an SPKG
sphinxcontrib_jsmath-1.0.1:                  does not support check for system package; will be installed as an SPKG
sphinxcontrib_qthelp-1.0.3:                  does not support check for system package; will be installed as an SPKG
sphinxcontrib_serializinghtml-1.1.4:         does not support check for system package; will be installed as an SPKG
sphinxcontrib_websupport-1.2.1:              does not support check for system package; will be installed as an SPKG
sqlalchemy-none:                             does not support check for system package; optional pip package; use "./sage -i sqlalchemy" to install
sqlite-3290000:                              using system package; SPKG will not be installed
suitesparse-5.6.0:                           no suitable system package; will be installed as an SPKG
surf-1.0.6-gcc6:                             does not support check for system package; experimental, use "./configure --enable-surf" to install
symmetrica-2.0.p11:                          no suitable system package; will be installed as an SPKG
sympow-2.023.6:                              no suitable system package; will be installed as an SPKG
sympy-1.6.2:                                 does not support check for system package; will be installed as an SPKG
tachyon-0.98.9.p7:                           no suitable system package; will be installed as an SPKG
tdlib-0.3.1.p0:                              does not support check for system package; optional, use "./configure --enable-tdlib" to install
termcap-1.3.1.p3:                            does not support check for system package; optional, use "./configure --enable-termcap" to install
terminado-0.8.3:                             does not support check for system package; will be installed as an SPKG
testpath-0.4.4:                              does not support check for system package; will be installed as an SPKG
texlive-none:                                does not support check for system package; optional, use "./configure --enable-texlive" to install
thebe-9624e0a0.p0:                           does not support check for system package; will be installed as an SPKG
threejs-r117:                                does not support check for system package; will be installed as an SPKG
tides-2.0.p0:                                does not support check for system package; optional, use "./configure --enable-tides" to install
topcom-0.17.7:                               does not support check for system package; optional, use "./configure --enable-topcom" to install
tornado-6.0.4:                               does not support check for system package; will be installed as an SPKG
tox-none:                                    does not support check for system package; optional pip package; use "./sage -i tox" to install
traitlets-4.3.3:                             does not support check for system package; will be installed as an SPKG
tzlocal-2.1:                                 does not support check for system package; will be installed as an SPKG
valgrind-3.14.0:                             does not support check for system package; experimental, use "./configure --enable-valgrind" to install
vcversioner-2.16.0.0.p0:                     does not support check for system package; will be installed as an SPKG
wcwidth-0.1.7.p0:                            does not support check for system package; will be installed as an SPKG
webencodings-0.5.1:                          does not support check for system package; will be installed as an SPKG
wheel-0.34.2:                                does not support check for system package; will be installed as an SPKG
widgetsnbextension-3.5.1:                    does not support check for system package; will be installed as an SPKG
xz-5.2.2.p0:                                 using system package; SPKG will not be installed
yasm-1.3.0.p0:                               using system package; SPKG will not be installed
zeromq-4.2.5:                                using system package; SPKG will not be installed
zipp-0.5.2:                                  does not support check for system package; will be installed as an SPKG
zlib-1.2.11.p0:                              using system package; SPKG will not be installed
zn_poly-0.9.2:                               no suitable system package; will be installed as an SPKG
zope_interface-none:                         does not support check for system package; will be installed as an SPKG
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating build/make/Makefile-auto
config.status: creating build/make/Makefile
config.status: creating src/bin/sage-env-config
config.status: creating build/bin/sage-build-env-config
config.status: creating build/pkgs/sage_conf/src/sage_conf.py
config.status: creating build/pkgs/sage_conf/src/setup.cfg
config.status: executing depfiles commands
config.status: executing mkdirs commands
config.status: creating directory /sage/logs/pkgs
config.status: creating directory local
config.status: creating directory local/bin
config.status: creating directory local/etc
config.status: creating directory local/include
config.status: creating directory local/lib
config.status: creating directory local/lib/pkgconfig
config.status: creating directory local/share
config.status: creating directory local/var/lib/sage/installed
config.status: creating symbolic link lib64 -> lib
configure: notice: the following SPKGs did not find equivalent system packages: arb boost boost_cropped brial cbc cddlib cliquer cmake coxeter3 eclib fflas_ffpack flint flintqs fplll gc gf2x gfan giac givaro gp2c iml isl lcalc libatomic_ops libbraiding libgd libnauty libsemigroups lrcalc m4ri m4rie mpfi nauty ninja_build ntl palp pandoc pari pari_elldata pari_galdata pari_galpol pari_nftables pari_seadata pari_seadata_small perl_cpan_polymake_prereq perl_term_readline_gnu planarity rw suitesparse symmetrica sympow tachyon zn_poly
checking for the package system in use... void
configure: hint: installing the following system packages is recommended and may avoid building some of the above SPKGs from source:
configure:   $ sudo xbps-install boost-devel cmake flint giac-devel libgiac imlib2-devel isl15-devel ninja pandoc pari pari-devel pari-elldata pari-galdata pari-galpol pari-seadata pari-elldata pari-galdata pari-galpol pari-seadata perl-Term-ReadLine-Gnu rw

comment:35 Changed 4 weeks ago by gh-dkwo

Is it possible to issue xbps-install -Su at the beginning, and install packages with xbps-install -S <pkg> (the -S being syncronise)? If we still get different results, we could try manually installing all the packages I have on my machine?

comment:36 Changed 4 days ago by mkoeppe

  • Milestone changed from sage-9.2 to sage-9.3
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