Opened 6 months ago
Closed 5 months ago
#27948 closed enhancement (fixed)
py3: fix doctests with optional package plantri
Reported by: | dcoudert | Owned by: | |
---|---|---|---|
Priority: | major | Milestone: | sage-8.9 |
Component: | graph theory | Keywords: | py3, graph |
Cc: | Merged in: | ||
Authors: | David Coudert | Reviewers: | Vincent Klein |
Report Upstream: | N/A | Work issues: | |
Branch: | 719e943 (Commits) | Commit: | 719e943a4c1594b2ac68f026046466fa89e16bdb |
Dependencies: | Stopgaps: |
Description
Multiple doctests are failing with plantri and py3.
Change History (7)
comment:1 Changed 6 months ago by
- Branch set to public/graphs/27948_plantri
- Commit set to 719e943a4c1594b2ac68f026046466fa89e16bdb
comment:2 Changed 6 months ago by
- Status changed from new to needs_review
with this first commit, we fix doctests like
File "src/sage/graphs/graph_generators.py", line 1425, in sage.graphs.graph_generators.GraphGenerators.? Failed example: len(list(gen)) # optional plantri Exception raised: Traceback (most recent call last): File "/Users/dcoudert/sage3/sage/local/lib/python3.7/site-packages/sage/doctest/forker.py", line 681, in _run self.compile_and_execute(example, compiler, test.globs) File "/Users/dcoudert/sage3/sage/local/lib/python3.7/site-packages/sage/doctest/forker.py", line 1105, in compile_and_execute exec(compiled, globs) File "<doctest sage.graphs.graph_generators.GraphGenerators.?[1]>", line 1, in <module> len(list(gen)) # optional plantri File "/Users/dcoudert/sage3/sage/local/lib/python3.7/site-packages/sage/graphs/graph_generators.py", line 1538, in planar_graphs Plantri().require() File "/Users/dcoudert/sage3/sage/local/lib/python3.7/site-packages/sage/features/__init__.py", line 156, in require presence = self.is_present() File "sage/misc/cachefunc.pyx", line 2312, in sage.misc.cachefunc.CachedMethodCallerNoArgs.__call__ (build/cythonized/sage/misc/cachefunc.c:12705) self.cache = f(self._instance) File "/Users/dcoudert/sage3/sage/local/lib/python3.7/site-packages/sage/features/__init__.py", line 129, in is_present res = self._is_present() File "/Users/dcoudert/sage3/sage/local/lib/python3.7/site-packages/sage/features/__init__.py", line 353, in _is_present return self.is_functional() File "/Users/dcoudert/sage3/sage/local/lib/python3.7/site-packages/sage/features/graph_generators.py", line 53, in is_functional if lines.find(expected) == -1: TypeError: argument should be integer or bytes-like object, not 'str'
comment:3 Changed 6 months ago by
The 2 remaining failing doctests require more investigation...
sage -t --long src/sage/graphs/graph_generators.py ********************************************************************** File "src/sage/graphs/graph_generators.py", line 1641, in sage.graphs.graph_generators.GraphGenerators.? Failed example: for i in range(12, 23): # optional plantri L = len(list(graphs.triangulations(i, minimum_connectivity=5))) # optional plantri print("{} {:3d}".format(i,L)) # optional plantri Exception raised: Traceback (most recent call last): File "/Users/dcoudert/sage3/sage/local/lib/python3.7/site-packages/sage/doctest/forker.py", line 681, in _run self.compile_and_execute(example, compiler, test.globs) File "/Users/dcoudert/sage3/sage/local/lib/python3.7/site-packages/sage/doctest/forker.py", line 1105, in compile_and_execute exec(compiled, globs) File "<doctest sage.graphs.graph_generators.GraphGenerators.?[7]>", line 2, in <module> L = len(list(graphs.triangulations(i, minimum_connectivity=Integer(5)))) # optional plantri File "/Users/dcoudert/sage3/sage/local/lib/python3.7/site-packages/sage/graphs/graph_generators.py", line 1746, in triangulations for G in graphs._read_planar_code(sp.stdout): File "/Users/dcoudert/sage3/sage/local/lib/python3.7/site-packages/sage/graphs/graph_generators.py", line 1150, in _read_planar_code G.set_embedding(embed_g) File "/Users/dcoudert/sage3/sage/local/lib/python3.7/site-packages/sage/graphs/generic_graph.py", line 2444, in set_embedding self._check_embedding_validity(embedding, boolean=False) File "/Users/dcoudert/sage3/sage/local/lib/python3.7/site-packages/sage/graphs/generic_graph.py", line 2551, in _check_embedding_validity raise ValueError("{} and {} are not neighbors but {} is in the list associated with {}".format(u, v, u, v)) ValueError: 10 and 6 are not neighbors but 10 is in the list associated with 6 ********************************************************************** File "src/sage/graphs/graph_generators.py", line 1673, in sage.graphs.graph_generators.GraphGenerators.? Failed example: [len(g) for g in graphs.triangulations(9, minimum_degree=4, minimum_connectivity=3, dual=True)] # optional plantri Exception raised: Traceback (most recent call last): File "/Users/dcoudert/sage3/sage/local/lib/python3.7/site-packages/sage/doctest/forker.py", line 681, in _run self.compile_and_execute(example, compiler, test.globs) File "/Users/dcoudert/sage3/sage/local/lib/python3.7/site-packages/sage/doctest/forker.py", line 1105, in compile_and_execute exec(compiled, globs) File "<doctest sage.graphs.graph_generators.GraphGenerators.?[11]>", line 1, in <module> [len(g) for g in graphs.triangulations(Integer(9), minimum_degree=Integer(4), minimum_connectivity=Integer(3), dual=True)] # optional plantri File "<doctest sage.graphs.graph_generators.GraphGenerators.?[11]>", line 1, in <listcomp> [len(g) for g in graphs.triangulations(Integer(9), minimum_degree=Integer(4), minimum_connectivity=Integer(3), dual=True)] # optional plantri File "/Users/dcoudert/sage3/sage/local/lib/python3.7/site-packages/sage/graphs/graph_generators.py", line 1746, in triangulations for G in graphs._read_planar_code(sp.stdout): File "/Users/dcoudert/sage3/sage/local/lib/python3.7/site-packages/sage/graphs/graph_generators.py", line 1150, in _read_planar_code G.set_embedding(embed_g) File "/Users/dcoudert/sage3/sage/local/lib/python3.7/site-packages/sage/graphs/generic_graph.py", line 2444, in set_embedding self._check_embedding_validity(embedding, boolean=False) File "/Users/dcoudert/sage3/sage/local/lib/python3.7/site-packages/sage/graphs/generic_graph.py", line 2551, in _check_embedding_validity raise ValueError("{} and {} are not neighbors but {} is in the list associated with {}".format(u, v, u, v)) ValueError: 10 and 9 are not neighbors but 10 is in the list associated with 9
comment:4 Changed 5 months ago by
- Milestone changed from sage-8.8 to sage-8.9
Moving tickets from the Sage 8.8 milestone that have been actively worked on in the last six months to the next release milestone (optimistically).
comment:5 Changed 5 months ago by
- Reviewers set to Vincent Klein
- Status changed from needs_review to positive_review
Looks good to me. I have opened #28108 for the two remaining doctests failures.
comment:6 Changed 5 months ago by
Thank you.
comment:7 Changed 5 months ago by
- Branch changed from public/graphs/27948_plantri to 719e943a4c1594b2ac68f026046466fa89e16bdb
- Resolution set to fixed
- Status changed from positive_review to closed
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New commits:
trac #27948: fix doctests failing due to str versus bytes