#26567 closed enhancement (fixed)
clean dense_graph.pyx
Reported by:  dcoudert  Owned by:  

Priority:  major  Milestone:  sage8.5 
Component:  graph theory  Keywords:  py3, graph 
Cc:  tscrim, chapoton  Merged in:  
Authors:  David Coudert  Reviewers:  Travis Scrimshaw 
Report Upstream:  N/A  Work issues:  
Branch:  0433888 (Commits)  Commit:  
Dependencies:  Stopgaps: 
Description (last modified by )
The big change in this ticket is to use yield
in iterators instead of first building a list and then returning an iterator over that list. This should speed up methods using these iterators.
On the way, I have put try.. except TypeError
around the 2 sorted
operations.
We also do PEP8 cleaning.
Change History (9)
comment:1 Changed 5 months ago by
 Branch set to public/26567_dense_graph
 Cc tscrim chapoton added
 Commit set to 56cd44fce3f7739f17fa4b06f968a2ef4800582e
 Description modified (diff)
 Status changed from new to needs_review
comment:2 Changed 5 months ago by
On the error messages, please remove the !
.
I think a better way to do
try: v, u = sorted((self.vertex_label(v_int), self.vertex_label(u_int))) except TypeError: v = self.vertex_label(v_int) u = self.vertex_label(u_int)
is to do
v = self.vertex_label(v_int) u = self.vertex_label(u_int) try: if u < v: v, u = u, v except TypeError: pass
as it does not create an intermediary objects (the tuple and the resulting list), I would guess one comparison is faster than calling sorted
, and we only change things if we need to.
comment:3 Changed 5 months ago by
 Commit changed from 56cd44fce3f7739f17fa4b06f968a2ef4800582e to 32e15a0dfae38e2adb3c9b438d71671b83e49683
comment:4 Changed 5 months ago by
 Commit changed from 32e15a0dfae38e2adb3c9b438d71671b83e49683 to 043388831f22a50333fd140823dedaf29de222cc
Branch pushed to git repo; I updated commit sha1. New commits:
0433888  trac #26567: improvements

comment:5 Changed 5 months ago by
All comment's implemented.
comment:6 Changed 5 months ago by
 Reviewers set to Travis Scrimshaw
Thanks. I just want to wait for a green patchbot. Once one comes back (morally) green, we can set a positive review.
comment:7 Changed 5 months ago by
 Status changed from needs_review to positive_review
The doctest failures seem unrelated.
comment:8 Changed 5 months ago by
 Branch changed from public/26567_dense_graph to 043388831f22a50333fd140823dedaf29de222cc
 Resolution set to fixed
 Status changed from positive_review to closed
comment:9 Changed 4 months ago by
 Commit 043388831f22a50333fd140823dedaf29de222cc deleted
Are there any plans for similar changes to sparse_graph.pyx, in particular to iterator_edges
? I tried doing something similar, but it led to other problems, so it would be better if someone who knows the graph theory stuff better to do it. The code in sparse_graph.pyx leads to Python 3 doctest failures with simplicial complexes.
New commits:
trac #26567: clean dense_graph.pyx and use yield in iterators