Opened 3 years ago
Last modified 19 months ago
#26212 closed task
py3: make all tests pass — at Version 335
Reported by: | chapoton | Owned by: | |
---|---|---|---|
Priority: | major | Milestone: | sage-duplicate/invalid/wontfix |
Component: | python3 | Keywords: | |
Cc: | vklein, embray, jmantysalo, gh-timokau | Merged in: | |
Authors: | Reviewers: | ||
Report Upstream: | N/A | Work issues: | |
Branch: | Commit: | ||
Dependencies: | Stopgaps: |
Description (last modified by )
This ticket is used to keep track of the progress towards python3.
release | files having failing doctests | more than 100 | from 10 to 100 | from 1 to 10 | failing doctests |
8.4.b3 | 915 | 42 | 251 | 622 | 17972 |
8.4.b4 | 803 | 23 | 175 | 605 | 10921 |
8.4.b5 | 657 | 17 | 145 | 495 | 8509 |
8.4.b6 | 594 | 17 | 127 | 450 | 7706 |
8.4.b7 | 587 | 17 | 128 | 442 | 7678 |
8.4.rc0 | 524 | 16 | 119 | 389 | 6976 |
8.5.b0 | 461 | 6 | 94 | 361 | 4206 |
8.5.b1 | 414 | 3 | 76 | 335 | 3206 |
8.5.b2 | 370 | 1 | 66 | 303 | 2465 |
8.5.b3 | 339 | 1 | 62 | 276 | 2245 |
8.5.b4 | 312 | 0 | 58 | 254 | 1947 |
8.5.b5 | 295 | 0 | 51 | 244 | 1741 |
8.5.b6 | 264 | 0 | 43 | 221 | 1514 |
8.5.rc0 | 252 | 0 | 39 | 213 | 1393 |
8.6.b0 | 234 | 0 | 30 | 204 | 1163 |
8.6.b1 | 231 | 0 | 30 | 201 | 1146 |
8.6.rc0 | 232 | 0 | 28 | 204 | 1124 |
8.6.rc1 | 236 | 0 | 30 | 206 | 1136 |
8.7.b0 | 240 | 1 | 38 | 201 | 1605 |
8.7.b1 | 200 | 0 | 23 | 177 | 866 |
8.7.b2 | 198 | 0 | 24 | 174 | 863 |
8.7.b3 | 166 | 0 | 20 | 146 | 717 |
8.7.b4 | 165 | 0 | 19 | 146 | 703 |
8.7.b5 | 143 | 0 | 12 | 131 | 562 |
8.7.b6 | 137 | 0 | 8 | 129 | 464 |
8.7.b7 | 122 | 0 | 8 | 114 | 447 |
8.7.rc0 | 105 | 0 | 7 | 98 | 384 |
8.8.b0 | 102 | 0 | 7 | 95 | 370 |
Now with python 3.7.3:
release | files having failing doctests | more than 100 | from 10 to 100 | from 1 to 10 | failing doctests |
8.8.b1 | 105 | 0 | 6 | 99 | 382 |
8.8.b2 | 94 | 0 | 6 | 88 | 324 |
8.8.b3 | 82 | 0 | 6 | 76 | 282 |
8.8.b4 | 77 | 0 | 2 | 75 | 246 |
8.8.b5 | 56 | 0 | 2 | 54 | 173 |
8.8.b6 | 49 | 0 | 1 | 48 | 151 |
8.8.b7 | 44 | 0 | 1 | 43 | 136 |
Folders where all tests pass
- algebras #26316 #26399 #26279 #26646 #26688 #26766 #27414 #27415 (final)
- algebras/steenrod ✔ #26219 and #26220
- arith #26208 ✔
- calculus #26751 #26988 (final)
- categories #26545 #26780 #27349 #27541 #27732 (remains 8) #27757 (final?)
- coding #26026 #26765 (final)
- combinat/cluster_algebra_quiver #27517 #27854 (2 files and 10 tests)
- combinat/designs #26430, #26837 (regression)
- combinat/finite_state_machine #26147, #26468, #26737, #27667 #27679
- combinat/posets #26998 (final)
- combinat/rigged_configurations #26805
- combinat/sf (#26220 +) #26215
- combinat/species #26328, #26610, #27072 (final)
- combinat/subset #26510 #27727
- combinat/words #26362, #26458, #26473, #26590
- crypto #26398 #27580 (final)
- databases #26702 #26704
- data_structures #24852 #27433 #27439 (final)
- docs ✔ #26310
- doc/en #26346 #27698 #27758 (final)
- dynamics #27453 #26982
- dynamics/arithmetic_dynamics #27779 (remains 1)
- features ✔
- functions #24758, #26591 #26865 #26770 #25979 #27812
- finance #26213 ✔
- games ✔
- game_theory #26429 #26738 (final)
- groups #26799, #27830 (final)
- groups/lie_gps #26518
- groups/matrix_gps #26400 (regression) #27459 (final again)
- homology #27452 (final)
- interacts #27117, #27157
- knots ✔
- libs/gsl
- lfunctions ✔
- logic #26214 ✔
- manifolds #26475
- matrix/ #26236 #26716, #27585, #27615 (final)
- media ✔
- modular #26382, #26611, #26967 #25301 #27145 #27313 (final)
- modular/modsym #26673 #27177
- modules #26276 #27115, #27466 (final)
- monoids ✔ #26294
- parallel ✔
- plot #26210 #26299 #26301 #26321, #27126 (final)
- probability #26216 ✔
- quadratic_forms/ #26224 ✔
- quivers #26211 ✔
- rings/asymptotic #26146
- rings/number_field #26263, #26619
- rings/function_field #26721 #26764 (final)
- rings/padics #27612 (final)
- rings/valuation #27868
- rings (power series) #26539
- sandpiles #26016 #26628 #26722
- sat #26543 ✔
- schemes #27049 #27449 #27471 #27619 (final)
- schemes/toric #26664
- schemes/curves
- schemes/product_projective
- schemes/elliptic_curves #26536, #26529, #26570, #26594 #26913 #26914 #27432 #27520 #27539
- server ✔
- sets #26659 #27456 #27794 (final)
- stats #26401 ✔
- structure #25694 #26768
- tensor #26295, #26601
- typeset ✔
- sage_setup #27075, #27073
Fragile folders (still fails sometimes)
- repl #26881 (4 fragile tests in src/sage/repl/attach.py)
- numerical/backends #24740 (for
char *
arguments management), #24741, #26631 (2 fragile tests in src/sage/numerical/backends/generic_backend.pyx), #27773 and #27774 (cplex_backend.pyx) - numerical #27342 #27614
- libs/singular (1 test in src/sage/libs/singular/function.pyx)
Folders with work in progress
- combinat/crystals (2 files and 6 tests)
- combinat/root_system #26649 #27654 (4 files and 14 tests)
- combinat #26535 #26671 #26719 #26778 #26781 #26917 #26918 #27013 #26592 #27710 #27777 #27930 (2 files and 3 tests)
- cpython #26855 #27886 (2 files and 3 tests, needs an upgrade of cython)
- doctest #27775 (1 file and 3 tests)
- ext #27776 (1 file and 1 test)
- geometry #26726 #27772 (1 file and 1 test)
- graphs #26431 #26447 #26527 #26640 #26645 #26846 #27125 (3 files and 10 tests)
- interfaces #26314 #27904 (1 file and 1 test)
- libs #26665 #27275 #27383 #27360 #27465 #27588 #27630 (1 file and 1 test)
- matroids #26767, #27378, #27771, #27787, #27889 (final)
- misc #26312, #26390 #26674 #26720 #27001 #27065 #27301 #27390 #27431 #27691 #27692 #27693 (4 files and 18 tests)
- rings #26697 #27048 #27440 #27650 #27767 (2 files and 10 tests)
- rings/polynomial #26670 #26760 #26909 #26792 #27674 #27768 #27791 #27908 #27909 #27914 (3 files and 3 tests)
- symbolic #27457 #27885 (1 file and 8 tests)
- tests #27440 (1 file and 1 test)
- tests/french_book #26495 #23572 #27574 #27651 #27668 #27727 (3 files and 3 tests)
Change History (336)
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The six remaining files with many failures are
['sage -t --long src/sage/combinat/finite_state_machine.py # 189 doctests failed', 'sage -t --long src/sage/dynamics/arithmetic_dynamics/projective_ds.py # 105 doctests failed', 'sage -t --long src/sage/graphs/generic_graph.py # 110 doctests failed', 'sage -t --long src/sage/groups/lie_gps/nilpotent_lie_group.py # 143 doctests failed', 'sage -t --long src/sage/rings/padics/padic_lattice_element.py # 167 doctests failed', 'sage -t --long src/sage/rings/valuation/limit_valuation.py # 106 doctests failed']
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comment:80 follow-up: ↓ 84 Changed 3 years ago by
For whoever wants to work on it, regarding
sage -t --long src/sage/combinat/finite_state_machine.py # 189 doctests failed
about 150 of the failures can be cured by replacing 'iteritems' by 'items' in lines like
elif hasattr(data, 'iteritems'): # data is a dict (or something similar),
I don't know if 'items' is the right attribute to check, or if it would actually be better to change to isinstance(data, dict)
. What other data structures are mean to be acceptable? What is "something similar" to a dict?
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comment:84 in reply to: ↑ 80 Changed 3 years ago by
Replying to jhpalmieri:
For whoever wants to work on it, regarding ... I don't know if 'items' is the right attribute to check, or if it would actually be better to change to
isinstance(data, dict)
. What other data structures are mean to be acceptable? What is "something similar" to a dict?
There is some custom "Mapping types" in sage like FreeModuleElement_generic_sparse
, which implements items
and iteritems
but doesn't inherit from dict
.
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There was a regression in the manifolds folder (sigh)..
The 3 remaining files with more than 100 failing doctests are
['sage -t --long src/sage/combinat/finite_state_machine.py # 182 doctests failed', 'sage -t --long src/sage/graphs/generic_graph.py # 109 doctests failed', 'sage -t --long src/sage/rings/padics/padic_lattice_element.py # 167 doctests failed']
The first one is already tackled in #26147 at least partially.
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Regarding
'sage -t --long src/sage/rings/padics/padic_lattice_element.py # 167 doctests failed'
I can reproduce those failures when I run ./sage -t ...
, but (at least for the first few) not when I run Sage interactively. Odd.
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Top ten bad files in 8.5.b2 are
['sage -t --long src/sage/numerical/backends/cvxopt_sdp_backend.pyx # 39 doctests failed', 'sage -t --long src/sage/algebras/iwahori_hecke_algebra.py # 40 doctests failed', 'sage -t --long src/sage/numerical/mip.pyx # 47 doctests failed', 'sage -t --long src/doc/en/thematic_tutorials/sandpile.rst # 49 doctests failed', 'sage -t --long src/sage/rings/function_field/ideal.py # 56 doctests failed', 'sage -t --long src/sage/graphs/graph.py # 59 doctests failed', 'sage -t --long src/sage/graphs/connectivity.pyx # 60 doctests failed', 'sage -t --long src/sage/misc/explain_pickle.py # 70 doctests failed', 'sage -t --long src/sage/numerical/sdp.pyx # 75 doctests failed', 'sage -t --long src/sage/graphs/generic_graph.py # 109 doctests failed']
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- Milestone changed from sage-8.4 to sage-8.5
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- Cc jmantysalo added
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The top ten worse files in 8.5.b3 are
['sage -t --long src/sage/combinat/finite_state_machine.py # 31 doctests failed', 'sage -t --long src/sage/schemes/riemann_surfaces/riemann_surface.py # 36 doctests failed', 'sage -t --long src/sage/numerical/mip.pyx # 47 doctests failed', 'sage -t --long src/doc/en/thematic_tutorials/sandpile.rst # 49 doctests failed', 'sage -t --long src/sage/rings/function_field/ideal.py # 56 doctests failed', 'sage -t --long src/sage/graphs/graph.py # 58 doctests failed', 'sage -t --long src/sage/graphs/connectivity.pyx # 59 doctests failed', 'sage -t --long src/sage/rings/tate_algebra_element.pyx # 63 doctests failed', 'sage -t --long src/sage/misc/explain_pickle.py # 70 doctests failed', 'sage -t --long src/sage/graphs/generic_graph.py # 115 doctests failed']
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Top ten worst files in 8.5.b4 are:
src/sage/graphs/graph.py # 30 doctests failed src/sage/numerical/linear_functions.pyx # 30 doctests failed src/sage/combinat/finite_state_machine.py # 31 doctests failed src/sage/schemes/riemann_surfaces/riemann_surface.py # 36 doctests failed src/sage/numerical/mip.pyx # 47 doctests failed src/doc/en/thematic_tutorials/sandpile.rst # 49 doctests failed src/sage/graphs/connectivity.pyx # 50 doctests failed src/sage/rings/function_field/ideal.py # 56 doctests failed src/sage/misc/explain_pickle.py # 70 doctests failed src/sage/graphs/generic_graph.py # 77 doctests failed
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Number of failing doctests in 8.5.beta4 by components
'en': 56, 'coding': 28, 'data_structures': 5, 'symbolic': 24, 'libs': 34, 'schemes': 102, 'combinat': 292, 'dynamics': 39, 'interacts': 6, 'homology': 29, 'plot': 5, 'functions': 5, 'matrix': 16, 'rings': 209, 'categories': 34, 'docbuild': 2, 'algebras': 21, 'common': 1, 'calculus': 5, 'tests': 40, 'matroids': 75, 'misc': 172, 'interfaces': 1, 'numerical': 206, 'modular': 82, 'repl': 13, 'groups': 14, 'sandpiles': 22, 'game_theory': 11, 'structure': 6, 'cpython': 7, 'sets': 6, 'geometry': 32, 'modules': 3, 'crypto': 13, 'graphs': 292, 'ext': 8, 'doctest': 8, 'databases': 16
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Worst 15 files in 8.5.b5:
[' src/sage/homology/simplicial_complex.py # 23 doctests failed', ' src/sage/numerical/linear_tensor_element.pyx # 23 doctests failed', ' src/sage/matroids/matroid.pyx # 24 doctests failed', ' src/sage/rings/integer.pyx # 24 doctests failed', ' src/sage/misc/decorators.py # 28 doctests failed', ' src/sage/numerical/linear_tensor_constraints.py # 28 doctests failed', ' src/sage/combinat/rigged_configurations/kr_tableaux.py # 30 doctests failed', ' src/sage/graphs/graph.py # 30 doctests failed', ' src/sage/numerical/linear_functions.pyx # 30 doctests failed', ' src/sage/schemes/riemann_surfaces/riemann_surface.py # 36 doctests failed', ' src/sage/numerical/mip.pyx # 47 doctests failed', ' src/doc/en/thematic_tutorials/sandpile.rst # 49 doctests failed', ' src/sage/graphs/connectivity.pyx # 49 doctests failed', ' src/sage/misc/explain_pickle.py # 70 doctests failed', ' src/sage/graphs/generic_graph.py # 79 doctests failed']
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and by components:
[('common', 1), ('interfaces', 1), ('docbuild', 2), ('coding', 2), ('modules', 4), ('functions', 5), ('calculus', 5), ('plot', 5), ('data_structures', 5), ('structure', 6), ('interacts', 6), ('sets', 6), ('cpython', 7), ('doctest', 8), ('ext', 8), ('crypto', 13), ('geometry', 13), ('repl', 13), ('groups', 15), ('algebras', 16), ('matrix', 17), ('sandpiles', 22), ('symbolic', 26), ('homology', 30), ('libs', 34), ('categories', 35), ('tests', 40), ('dynamics', 40), ('en', 56), ('matroids', 73), ('schemes', 80), ('modular', 82), ('rings', 141), ('misc', 171), ('numerical', 206), ('combinat', 240), ('graphs', 300)]
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worst 20 files in 8.5.b6:
['/sage/matroids/matroid.pyx # 18 doctests failed', '/sage/combinat/finite_state_machine.py # 20 doctests failed', '/sage/misc/classcall_metaclass.pyx # 20 doctests failed', '/sage/numerical/linear_tensor.py # 20 doctests failed', '/sage/dynamics/arithmetic_dynamics/wehlerK3.py # 21 doctests failed', '/sage/rings/polynomial/multi_polynomial_ideal.py # 21 doctests failed', '/sage/homology/simplicial_complex.py # 22 doctests failed', '/sage/sandpiles/sandpile.py # 22 doctests failed', '/sage/numerical/linear_tensor_element.pyx # 23 doctests failed', '/sage/rings/integer.pyx # 24 doctests failed', '/sage/misc/decorators.py # 28 doctests failed', '/sage/numerical/linear_tensor_constraints.py # 28 doctests failed', '/sage/graphs/graph.py # 30 doctests failed', '/sage/numerical/linear_functions.pyx # 30 doctests failed', '/sage/schemes/riemann_surfaces/riemann_surface.py # 36 doctests failed', '/sage/numerical/mip.pyx # 47 doctests failed', '/doc/en/thematic_tutorials/sandpile.rst # 49 doctests failed', '/sage/graphs/connectivity.pyx # 49 doctests failed', '/sage/misc/explain_pickle.py # 70 doctests failed', '/sage/graphs/generic_graph.py # 78 doctests failed']
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15 worst offenders in 8.5.rc0:
['src/sage/dynamics/arithmetic_dynamics/wehlerK3.py # 21 doctests failed', 'src/sage/matroids/matroid.pyx # 21 doctests failed', 'src/sage/rings/polynomial/multi_polynomial_ideal.py # 21 doctests failed', 'src/sage/homology/simplicial_complex.py # 22 doctests failed', 'src/sage/sandpiles/sandpile.py # 22 doctests failed', 'src/sage/numerical/linear_tensor_element.pyx # 23 doctests failed', 'src/sage/misc/decorators.py # 28 doctests failed', 'src/sage/numerical/linear_tensor_constraints.py # 28 doctests failed', 'src/sage/graphs/graph.py # 30 doctests failed', 'src/sage/numerical/linear_functions.pyx # 30 doctests failed', 'src/sage/schemes/riemann_surfaces/riemann_surface.py # 36 doctests failed', 'src/sage/numerical/mip.pyx # 47 doctests failed', 'src/doc/en/thematic_tutorials/sandpile.rst # 49 doctests failed', 'src/sage/misc/explain_pickle.py # 70 doctests failed', 'src/sage/graphs/generic_graph.py # 74 doctests failed']
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comment:166 Changed 3 years ago by
15 worst offenders in 8.6.b0:
['src/sage/categories/finite_posets.py # 15 doctests failed', 'src/sage/combinat/matrices/hadamard_matrix.py # 15 doctests failed', 'src/sage/combinat/finite_state_machine.py # 19 doctests failed', 'src/sage/misc/classcall_metaclass.pyx # 20 doctests failed', 'src/sage/dynamics/arithmetic_dynamics/wehlerK3.py # 21 doctests failed', 'src/sage/rings/polynomial/multi_polynomial_ideal.py # 21 doctests failed', 'src/sage/sandpiles/sandpile.py # 22 doctests failed', 'src/sage/matroids/matroid.pyx # 23 doctests failed', 'src/sage/homology/simplicial_complex.py # 24 doctests failed', 'src/sage/graphs/graph.py # 28 doctests failed', 'src/sage/misc/decorators.py # 28 doctests failed', 'src/sage/schemes/riemann_surfaces/riemann_surface.py # 36 doctests failed', 'src/doc/en/thematic_tutorials/sandpile.rst # 49 doctests failed', 'src/sage/graphs/generic_graph.py # 68 doctests failed', 'src/sage/misc/explain_pickle.py # 70 doctests failed']
comment:167 Changed 3 years ago by
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maybe due to the upgrade of gap, there is a regression:
sage -t --long src/sage/groups/matrix_gps/finitely_generated.py # 3 doctests failed
comment:168 Changed 3 years ago by
- Cc gh-timokau added
comment:169 Changed 3 years ago by
- Milestone changed from sage-8.5 to sage-8.7
comment:170 Changed 3 years ago by
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comment:171 Changed 3 years ago by
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comment:173 Changed 3 years ago by
worst 15 files in 8.6.b1:
['src/sage/categories/finite_posets.py # 15 doctests failed', 'src/sage/combinat/matrices/hadamard_matrix.py # 15 doctests failed', 'src/sage/matroids/matroid.pyx # 17 doctests failed', 'src/sage/combinat/finite_state_machine.py # 19 doctests failed', 'src/sage/misc/classcall_metaclass.pyx # 20 doctests failed', 'src/sage/dynamics/arithmetic_dynamics/wehlerK3.py # 21 doctests failed', 'src/sage/rings/polynomial/multi_polynomial_ideal.py # 21 doctests failed', 'src/sage/sandpiles/sandpile.py # 22 doctests failed', 'src/sage/homology/simplicial_complex.py # 23 doctests failed', 'src/sage/graphs/graph.py # 28 doctests failed', 'src/sage/misc/decorators.py # 28 doctests failed', 'src/sage/schemes/riemann_surfaces/riemann_surface.py # 36 doctests failed', 'src/doc/en/thematic_tutorials/sandpile.rst # 49 doctests failed', 'src/sage/graphs/generic_graph.py # 63 doctests failed', 'src/sage/misc/explain_pickle.py # 70 doctests failed']
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comment:177 Changed 3 years ago by
files where failing doctests have re-appeared (regressions):
['src/sage/categories/crystals.py', 'src/sage/matroids/circuit_closures_matroid.pyx', 'src/sage/matroids/dual_matroid.py']
file where failing doctests have disappeared (progress):
['src/sage/misc/decorators.py', 'src/sage/rings/polynomial/laurent_polynomial.pyx']
so this is a net loss of 1 file
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comment:182 Changed 3 years ago by
regressions in
'sage -t --long src/sage/combinat/multiset_partition_into_sets_ordered.py', 'sage -t --long src/sage/combinat/set_partition.py', 'sage -t --long src/sage/dynamics/arithmetic_dynamics/endPN_automorphism_group.py', 'sage -t --long src/sage/graphs/spanning_tree.pyx', 'sage -t --long src/sage/modules/multi_filtered_vector_space.py', 'sage -t --long src/sage/rings/invariants/invariant_theory.py'
and progress in
'sage -t --long src/sage/matrix/compute_J_ideal.py', 'sage -t --long src/sage/matroids/circuit_closures_matroid.pyx'}
so this a net loss of 4 files
comment:183 Changed 3 years ago by
I don't have any doctest error with py3 for sage -t --long src/sage/graphs/spanning_tree.pyx
. Can you share what you get. Thanks.
comment:184 Changed 3 years ago by
This and other failures can be seen in the unique patchbot report running python3 on ticket 0:
https://patchbot.sagemath.org/ticket/0/
sage -t --long src/sage/graphs/spanning_tree.pyx ********************************************************************** File "src/sage/graphs/spanning_tree.pyx", line 188, in sage.graphs.spanning_tree.kruskal Failed example: sorted(kruskal(G, check=True)) Expected: [('a', 'b', 4), ('a', 'h', 8), ('c', 'd', 7), ('c', 'f', 4), ('c', 'i', 2), ('d', 'e', 9), ('f', 'g', 2), ('g', 'h', 1)] Got: [('a', 'b', 4), ('b', 'c', 8), ('c', 'd', 7), ('c', 'f', 4), ('c', 'i', 2), ('d', 'e', 9), ('f', 'g', 2), ('g', 'h', 1)] ********************************************************************** 1 item had failures: 1 of 45 in sage.graphs.spanning_tree.kruskal [83 tests, 1 failure, 0.60 s]
comment:185 Changed 3 years ago by
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comment:187 Changed 3 years ago by
See #27059 for of fix of the issue of #comment:184
comment:188 Changed 3 years ago by
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comment:189 Changed 3 years ago by
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comment:190 Changed 3 years ago by
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massive regression in 8.7.beta0, in particular here:
sage -t --long src/sage/schemes/elliptic_curves/BSD.py # 17 doctests failed sage -t --long src/sage/schemes/elliptic_curves/gal_reps.py # 20 doctests failed sage -t --long src/sage/schemes/elliptic_curves/isogeny_small_degree.py # 72 doctests failed sage -t --long src/sage/schemes/elliptic_curves/ell_curve_isogeny.py # 204 doctests failed
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comment:192 Changed 3 years ago by
Worst 15 files in 8.7.beta0 (once the large regression in isogenies is fixed):
'sage -t --long src/sage/rings/polynomial/multi_polynomial_sequence.py # 12 doctests failed', 'sage -t --long src/sage/symbolic/constants.py # 12 doctests failed', 'sage -t --long src/sage/tests/french_book/mpoly.py # 13 doctests failed', 'sage -t --long src/sage/graphs/digraph.py # 14 doctests failed', 'sage -t --long src/sage/categories/finite_posets.py # 15 doctests failed', 'sage -t --long src/sage/combinat/finite_state_machine.py # 19 doctests failed', 'sage -t --long src/sage/matroids/matroid.pyx # 19 doctests failed', 'sage -t --long src/sage/misc/classcall_metaclass.pyx # 20 doctests failed', 'sage -t --long src/sage/dynamics/arithmetic_dynamics/wehlerK3.py # 21 doctests failed', 'sage -t --long src/sage/rings/polynomial/multi_polynomial_ideal.py # 21 doctests failed', 'sage -t --long src/sage/sandpiles/sandpile.py # 22 doctests failed', 'sage -t --long src/sage/schemes/riemann_surfaces/riemann_surface.py # 36 doctests failed', 'sage -t --long src/doc/en/thematic_tutorials/sandpile.rst # 49 doctests failed', 'sage -t --long src/sage/graphs/generic_graph.py # 51 doctests failed', 'sage -t --long src/sage/misc/explain_pickle.py # 70 doctests failed'
comment:193 Changed 3 years ago by
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comment:196 Changed 3 years ago by
worst 15 files in 8.7.b1:
'src/sage/matroids/graphic_matroid.py # 11 doctests failed', 'src/sage/schemes/product_projective/point.py # 11 doctests failed', 'src/sage/symbolic/expression.pyx # 11 doctests failed', 'src/sage/rings/polynomial/multi_polynomial_sequence.py # 12 doctests failed', 'src/sage/symbolic/constants.py # 12 doctests failed', 'src/sage/modular/modform/element.py # 13 doctests failed', 'src/sage/tests/french_book/mpoly.py # 13 doctests failed', 'src/sage/categories/finite_posets.py # 15 doctests failed', 'src/sage/combinat/finite_state_machine.py # 19 doctests failed', 'src/sage/misc/classcall_metaclass.pyx # 20 doctests failed', 'src/sage/rings/polynomial/multi_polynomial_ideal.py # 20 doctests failed', 'src/sage/dynamics/arithmetic_dynamics/wehlerK3.py # 21 doctests failed', 'src/sage/matroids/matroid.pyx # 21 doctests failed', 'src/sage/graphs/generic_graph.py # 50 doctests failed', 'src/sage/misc/explain_pickle.py # 70 doctests failed'
comment:197 Changed 3 years ago by
That is some impressive progress! Good work.
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comment:207 Changed 2 years ago by
Worst 15 files in 8.7.b3:
['src/sage/tests/french_book/programmation_doctest.py # 10 doctests failed', 'src/sage/matroids/graphic_matroid.py # 11 doctests failed', 'src/sage/schemes/product_projective/point.py # 11 doctests failed', 'src/sage/rings/polynomial/multi_polynomial_sequence.py # 12 doctests failed', 'src/sage/symbolic/constants.py # 12 doctests failed', 'src/sage/tests/french_book/mpoly.py # 13 doctests failed', 'src/sage/graphs/digraph.py # 14 doctests failed', 'src/sage/categories/finite_posets.py # 15 doctests failed', 'src/sage/combinat/finite_state_machine.py # 19 doctests failed', 'src/sage/misc/classcall_metaclass.pyx # 20 doctests failed', 'src/sage/dynamics/arithmetic_dynamics/wehlerK3.py # 21 doctests failed', 'src/sage/matroids/matroid.pyx # 21 doctests failed', 'src/sage/rings/polynomial/multi_polynomial_ideal.py # 21 doctests failed', 'src/sage/graphs/generic_graph.py # 30 doctests failed', 'src/sage/misc/explain_pickle.py # 70 doctests failed']
comment:208 Changed 2 years ago by
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comment:211 Changed 2 years ago by
Worst 15 files in 8.7.b4:
'src/sage/symbolic/expression.pyx # 10 doctests failed', 'src/sage/matroids/graphic_matroid.py # 11 doctests failed', 'src/sage/schemes/product_projective/point.py # 11 doctests failed', 'src/sage/rings/polynomial/multi_polynomial_sequence.py # 12 doctests failed', 'src/sage/symbolic/constants.py # 12 doctests failed', 'src/sage/matrix/matrix_polynomial_dense.pyx # 14 doctests failed', 'src/sage/tests/books/computational-mathematics-with-sagemath/mpoly_doctest.py # 14 doctests failed', 'src/sage/categories/finite_posets.py # 15 doctests failed', 'src/sage/graphs/generic_graph.py # 18 doctests failed', 'src/sage/combinat/finite_state_machine.py # 19 doctests failed', 'src/sage/misc/classcall_metaclass.pyx # 20 doctests failed', 'src/sage/dynamics/arithmetic_dynamics/wehlerK3.py # 21 doctests failed', 'src/sage/matroids/matroid.pyx # 21 doctests failed', 'src/sage/rings/polynomial/multi_polynomial_ideal.py # 21 doctests failed', 'src/sage/misc/explain_pickle.py # 70 doctests failed'
comment:212 Changed 2 years ago by
Re
'src/sage/symbolic/constants.py # 12 doctests failed',
I only see 6 failed doctests (this is on OS X; is it platform dependent?).
comment:213 Changed 2 years ago by
There are certainly some differences between plateforms and other factors. For instance, I see this, which is not in the reported worst 15:
sage -t --long src/sage/graphs/digraph.py # 14 doctests failed
I had 14 with 8.7.beta1, only 7 with beta2 and beta3, and now 14 again. All these failed doctests are related to the order of items in the output. See #27170.
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comment:221 Changed 2 years ago by
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worst 15 in 8.7.b5:
['src/sage/numerical/backends/cvxopt_backend.pyx # 9 doctests failed', 'src/sage/rings/integer.pyx # 9 doctests failed', 'src/sage/symbolic/expression.pyx # 9 doctests failed', 'src/sage/crypto/lwe.py # 10 doctests failed', 'src/sage/misc/test_class_pickling.py # 10 doctests failed', 'src/sage/numerical/sdp.pyx # 10 doctests failed', 'src/sage/matroids/graphic_matroid.py # 11 doctests failed', 'src/sage/schemes/product_projective/point.py # 11 doctests failed', 'src/sage/symbolic/constants.py # 12 doctests failed', 'src/sage/categories/finite_posets.py # 15 doctests failed', 'src/sage/graphs/generic_graph.py # 18 doctests failed', 'src/sage/matroids/matroid.pyx # 18 doctests failed', 'src/sage/combinat/finite_state_machine.py # 19 doctests failed', 'src/sage/misc/classcall_metaclass.pyx # 20 doctests failed', 'src/sage/misc/explain_pickle.py # 70 doctests failed']
comment:222 Changed 2 years ago by
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comment:227 Changed 2 years ago by
Is there an easy place where we can find a full log of all Python 3 test failures?
comment:228 Changed 2 years ago by
comment:229 Changed 2 years ago by
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comment:230 Changed 2 years ago by
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in 8.7.b6:
less than 1 : 55 less than 2 : 78 less than 4 : 106 less than 8 : 124 less than 16 : 134
and the worst 15 are:
['src/sage/libs/eclib/interface.py # 8 doctests failed', 'src/sage/libs/ntl/ntl_ZZ_pX.pyx # 8 doctests failed', 'src/sage/libs/ppl.pyx # 9 doctests failed', 'src/sage/misc/nested_class.pyx # 9 doctests failed', 'src/sage/numerical/backends/cvxopt_backend.pyx # 9 doctests failed', 'src/sage/rings/integer.pyx # 9 doctests failed', 'src/sage/symbolic/expression.pyx # 9 doctests failed', 'src/sage/crypto/lwe.py # 10 doctests failed', 'src/sage/misc/test_class_pickling.py # 10 doctests failed', 'src/sage/numerical/sdp.pyx # 10 doctests failed', 'src/sage/schemes/product_projective/point.py # 11 doctests failed', 'src/sage/symbolic/constants.py # 12 doctests failed', 'src/sage/combinat/finite_state_machine.py # 19 doctests failed', 'src/sage/misc/classcall_metaclass.pyx # 20 doctests failed', 'src/sage/matroids/matroid.pyx # 22 doctests failed']
comment:231 Changed 2 years ago by
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comment:238 Changed 2 years ago by
When the next beta comes out, I think it will merge all of the algebra branches, and then we can move that out of the "in progress" list.
comment:239 Changed 2 years ago by
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on 8.7.b7:
less than 1 : 44 less than 2 : 64 less than 4 : 93 less than 8 : 111 less than 16 : 118
and the 15 worse are
['src/sage/libs/ntl/ntl_ZZ_pX.pyx # 8 doctests failed', 'src/sage/numerical/backends/cvxopt_backend.pyx # 8 doctests failed', 'src/sage/numerical/sdp.pyx # 8 doctests failed', 'src/sage/symbolic/expression.pyx # 8 doctests failed', 'src/sage/libs/ppl.pyx # 9 doctests failed', 'src/sage/misc/nested_class.pyx # 9 doctests failed', 'src/sage/rings/integer.pyx # 9 doctests failed', 'src/sage/crypto/lwe.py # 10 doctests failed', 'src/sage/schemes/product_projective/point.py # 11 doctests failed', 'src/sage/symbolic/constants.py # 12 doctests failed', 'src/sage/combinat/cluster_algebra_quiver/quiver.py # 13 doctests failed', 'src/sage/combinat/cluster_algebra_quiver/cluster_seed.py # 18 doctests failed', 'src/sage/matroids/matroid.pyx # 18 doctests failed', 'src/sage/combinat/finite_state_machine.py # 19 doctests failed', 'src/sage/misc/classcall_metaclass.pyx # 20 doctests failed']
comment:240 Changed 2 years ago by
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comment:250 Changed 2 years ago by
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- Milestone changed from sage-8.7 to sage-8.8
in 8.7.rc0: worst 15 are
['src/sage/groups/perm_gps/permgroup.py # 7 doctests failed', 'src/sage/graphs/generic_graph.py # 8 doctests failed', 'src/sage/libs/ntl/ntl_ZZ_pX.pyx # 8 doctests failed', 'src/sage/numerical/backends/cvxopt_backend.pyx # 8 doctests failed', 'src/sage/numerical/sdp.pyx # 8 doctests failed', 'src/sage/libs/ppl.pyx # 9 doctests failed', 'src/sage/misc/nested_class.pyx # 9 doctests failed', 'src/sage/rings/integer.pyx # 9 doctests failed', 'src/sage/symbolic/expression.pyx # 10 doctests failed', 'src/sage/symbolic/constants.py # 12 doctests failed', 'src/sage/combinat/cluster_algebra_quiver/quiver.py # 14 doctests failed', 'src/sage/combinat/cluster_algebra_quiver/cluster_seed.py # 18 doctests failed', 'src/sage/matroids/matroid.pyx # 18 doctests failed', 'src/sage/combinat/finite_state_machine.py # 19 doctests failed', 'src/sage/misc/classcall_metaclass.pyx # 20 doctests failed']
and there remains
less than 1 : 35 less than 2 : 56 less than 4 : 83 less than 8 : 95 less than 16 : 101 less than 64 : 105 less than 128 : 105 less than 256 : 105
comment:251 Changed 2 years ago by
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comment:253 Changed 2 years ago by
Is there a followup ticket to modify src/ext/doctest/python3-known-passing.txt
? Should that happen for every beta, or just every actual release? Anyway, we should add algebras
, data_structures
, homology
, modular
, modules
, schemes/curves
, schemes/product_projective
. What am I missing?
comment:254 Changed 2 years ago by
yes, this should be done from time to time. If you want to do that, please do! Now would be a good time. Here is my most recent list of good modules:
good = ["algebras", "algebras/steenrod", "arith", "coding", "calculus", "combinat/designs", "combinat/posets", "combinat/species", "combinat/rigged_configurations", "combinat/sf", "combinat/words", "databases", "data_structures", "docs", "features", "finance", "games", "game_theory", "groups/lie_gps", "groups/matrix_gps", "homology", "interacts", "knots", "libs/gsl", "lfunctions", "logic", "manifolds", "media", "modular/modsym", "modular", "modules", "monoids", "parallel", "plot", "probability", "quadratic_forms", "quivers", "rings/asymptotic", "rings/function_field", "rings/number_field", "sandpiles", "sat", "schemes/toric", "schemes/curves", "schemes/product_projective", "server", "stats", "structure", "tensor", "typeset", 'sage_setup']
comment:255 Changed 2 years ago by
See #27519. I'll post a branch there once I've finished testing.
comment:256 Changed 2 years ago by
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comment:259 Changed 2 years ago by
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In 8.8.b0:
less than 1 : 33 less than 2 : 54 less than 4 : 80 less than 8 : 92 less than 16 : 99 less than 64 : 102
and the worst 15 are
['src/sage/combinat/root_system/weyl_group.py # 7 doctests failed', 'src/sage/groups/perm_gps/permgroup.py # 7 doctests failed', 'src/sage/libs/ntl/ntl_ZZ_pX.pyx # 8 doctests failed', 'src/sage/numerical/backends/cvxopt_backend.pyx # 8 doctests failed', 'src/sage/numerical/sdp.pyx # 8 doctests failed', 'src/sage/misc/nested_class.pyx # 9 doctests failed', 'src/sage/rings/integer.pyx # 9 doctests failed', 'src/sage/symbolic/expression.pyx # 9 doctests failed', 'src/sage/graphs/generic_graph.py # 10 doctests failed', 'src/sage/symbolic/constants.py # 12 doctests failed', 'src/sage/combinat/cluster_algebra_quiver/cluster_seed.py # 13 doctests failed', 'src/sage/combinat/cluster_algebra_quiver/quiver.py # 13 doctests failed', 'src/sage/matroids/matroid.pyx # 18 doctests failed', 'src/sage/combinat/finite_state_machine.py # 19 doctests failed', 'src/sage/misc/classcall_metaclass.pyx # 20 doctests failed']
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Little regression after passing to python 3.7.3:
less than 1 : 36 less than 2 : 56 less than 4 : 84 less than 8 : 94 less than 16 : 102 less than 64 : 105
In the 15 worst files, 178 broken doctests:
['src/sage/groups/perm_gps/permgroup.py # 7 doctests failed', 'src/sage/graphs/generic_graph.py # 8 doctests failed', 'src/sage/libs/ntl/ntl_ZZ_pX.pyx # 8 doctests failed', 'src/sage/numerical/backends/cvxopt_backend.pyx # 8 doctests failed', 'src/sage/doctest/sources.py # 9 doctests failed', 'src/sage/misc/nested_class.pyx # 9 doctests failed', 'src/sage/numerical/sdp.pyx # 9 doctests failed', 'src/sage/rings/integer.pyx # 9 doctests failed', 'src/sage/symbolic/expression.pyx # 9 doctests failed', 'src/sage/symbolic/constants.py # 12 doctests failed', 'src/sage/combinat/cluster_algebra_quiver/cluster_seed.py # 13 doctests failed', 'src/sage/combinat/cluster_algebra_quiver/quiver.py # 14 doctests failed', 'src/sage/misc/classcall_metaclass.pyx # 20 doctests failed', 'src/sage/matroids/matroid.pyx # 21 doctests failed', 'src/sage/combinat/finite_state_machine.py # 22 doctests failed']
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Some progress in 8.8.b2:
less than 1 : 34 less than 2 : 54 less than 4 : 77 less than 8 : 86 less than 16 : 91 less than 64 : 94
In the 15 worst files, 163 broken doctests:
['src/sage/tests/books/computational-mathematics-with-sagemath/graphtheory_doctest.py # 5 doctests failed', 'src/sage/ext/fast_callable.pyx # 6 doctests failed', 'src/sage/groups/perm_gps/permgroup.py # 6 doctests failed', 'src/sage/rings/polynomial/multi_polynomial.pyx # 6 doctests failed', 'src/sage/combinat/root_system/weyl_group.py # 7 doctests failed', 'src/sage/graphs/generic_graph.py # 8 doctests failed', 'src/sage/libs/ntl/ntl_ZZ_pX.pyx # 8 doctests failed', 'src/sage/misc/nested_class.pyx # 9 doctests failed', 'src/sage/rings/integer.pyx # 9 doctests failed', 'src/sage/symbolic/expression.pyx # 12 doctests failed', 'src/sage/combinat/cluster_algebra_quiver/cluster_seed.py # 13 doctests failed', 'src/sage/combinat/cluster_algebra_quiver/quiver.py # 13 doctests failed', 'src/sage/matroids/matroid.pyx # 19 doctests failed', 'src/sage/misc/classcall_metaclass.pyx # 20 doctests failed', 'src/sage/combinat/finite_state_machine.py # 22 doctests failed']
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on 8.8.b3:
less than 1 : 32 less than 2 : 48 less than 4 : 67 less than 8 : 74 less than 16 : 80 less than 64 : 82
In the 15 worst files, 153 broken doctests:
['src/sage/rings/polynomial/binary_form_reduce.py # 5 doctests failed', 'src/sage/ext/fast_callable.pyx # 6 doctests failed', 'src/sage/groups/perm_gps/permgroup.py # 6 doctests failed', 'src/sage/rings/polynomial/multi_polynomial.pyx # 6 doctests failed', 'src/sage/combinat/root_system/weyl_group.py # 7 doctests failed', 'src/sage/graphs/generic_graph.py # 8 doctests failed', 'src/sage/libs/ntl/ntl_ZZ_pX.pyx # 8 doctests failed', 'src/sage/misc/nested_class.pyx # 9 doctests failed', 'src/sage/rings/integer.pyx # 9 doctests failed', 'src/sage/symbolic/expression.pyx # 10 doctests failed', 'src/sage/combinat/finite_state_machine.py # 11 doctests failed', 'src/sage/combinat/cluster_algebra_quiver/cluster_seed.py # 13 doctests failed', 'src/sage/combinat/cluster_algebra_quiver/quiver.py # 14 doctests failed', 'src/sage/misc/classcall_metaclass.pyx # 20 doctests failed', 'src/sage/matroids/matroid.pyx # 21 doctests failed']
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In the 15 worst files, 125 broken doctests:
['src/sage/combinat/set_partition.py # 5 doctests failed', 'src/sage/dynamics/arithmetic_dynamics/projective_ds.py # 5 doctests failed', 'src/sage/rings/polynomial/binary_form_reduce.py # 5 doctests failed', 'src/sage/ext/fast_callable.pyx # 6 doctests failed', 'src/sage/groups/perm_gps/permgroup.py # 6 doctests failed', 'src/sage/rings/polynomial/multi_polynomial.pyx # 6 doctests failed', 'src/sage/combinat/cluster_algebra_quiver/cluster_seed.py # 7 doctests failed', 'src/sage/combinat/root_system/weyl_group.py # 7 doctests failed', 'src/sage/graphs/generic_graph.py # 8 doctests failed', 'src/sage/libs/ntl/ntl_ZZ_pX.pyx # 8 doctests failed', 'src/sage/misc/nested_class.pyx # 9 doctests failed', 'src/sage/rings/integer.pyx # 9 doctests failed', 'src/sage/rings/qqbar.py # 9 doctests failed', 'src/sage/symbolic/expression.pyx # 12 doctests failed', 'src/sage/matroids/matroid.pyx # 23 doctests failed']
One can note a large regression in qqbar, and that matroids still get worse too.
comment:298 Changed 2 years ago by
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comment:299 Changed 2 years ago by
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comment:300 Changed 2 years ago by
Regarding matroids
: there is some piece of underlying data which is intrinsically unordered, and it is causing all sorts of failures. I don't know if it's best to mark them all # py3 random
or to sort the data so this doesn't happen. Is there an active Sage developer who knows enough about matroids to help make this decision?
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comment:310 Changed 2 years ago by
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With 8.8.b5:
less than 1 : 22 less than 2 : 30 less than 4 : 48 less than 8 : 52 less than 16 : 55 less than 64 : 56
In the 15 worst files, 102 broken doctests:
['src/sage/combinat/root_system/integrable_representations.py # 4 doctests failed', 'src/sage/combinat/set_partition.py # 4 doctests failed', 'src/sage/doctest/test.py # 4 doctests failed', 'src/sage/matroids/graphic_matroid.py # 4 doctests failed', 'src/sage/misc/functional.py # 4 doctests failed', 'src/sage/repl/attach.py # 4 doctests failed', 'src/sage/rings/polynomial/toy_buchberger.py # 4 doctests failed', 'src/sage/groups/perm_gps/permgroup.py # 6 doctests failed', 'src/sage/combinat/cluster_algebra_quiver/cluster_seed.py # 7 doctests failed', 'src/sage/combinat/root_system/weyl_group.py # 7 doctests failed', 'src/sage/graphs/generic_graph.py # 8 doctests failed', 'src/sage/misc/nested_class.pyx # 9 doctests failed', 'src/sage/rings/integer.pyx # 9 doctests failed', 'src/sage/symbolic/expression.pyx # 10 doctests failed', 'src/sage/matroids/matroid.pyx # 18 doctests failed']
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comment:315 Changed 2 years ago by
#27854 deals with the rest of cluster_algebra_seed
apart from one doctest that fails intermittently.
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comment:317 Changed 2 years ago by
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In sage 8.8.b6, some progress:
less than 1 : 20 less than 2 : 27 less than 4 : 42 less than 8 : 46 less than 16 : 48 less than 64 : 49
In the 15 worst files, 96 broken doctests:
['src/sage/geometry/polyhedron/ppl_lattice_polytope.py # 3 doctests failed', 'src/sage/misc/sageinspect.py # 3 doctests failed', 'src/sage/rings/polynomial/multi_polynomial_ideal.py # 3 doctests failed', 'src/sage/rings/valuation/inductive_valuation.py # 3 doctests failed', 'src/sage/matroids/graphic_matroid.py # 4 doctests failed', 'src/sage/misc/functional.py # 4 doctests failed', 'src/sage/repl/attach.py # 4 doctests failed', 'src/sage/rings/polynomial/toy_buchberger.py # 4 doctests failed', 'src/sage/combinat/cluster_algebra_quiver/cluster_seed.py # 7 doctests failed', 'src/sage/combinat/root_system/weyl_group.py # 7 doctests failed', 'src/sage/symbolic/expression.pyx # 7 doctests failed', 'src/sage/graphs/generic_graph.py # 8 doctests failed', 'src/sage/misc/nested_class.pyx # 9 doctests failed', 'src/sage/rings/integer.pyx # 9 doctests failed', 'src/sage/matroids/matroid.pyx # 21 doctests failed']
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comment:321 Changed 2 years ago by
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comment:322 Changed 2 years ago by
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comment:323 follow-up: ↓ 325 Changed 2 years ago by
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moved matroids to the "work in progress section"
comment:324 follow-up: ↓ 327 Changed 2 years ago by
If no one is working on it yet, I will look into multi_polynomial_ideal
and toy_buchberger
.
comment:325 in reply to: ↑ 323 Changed 2 years ago by
Replying to chapoton:
moved matroids to the "work in progress section"
Oops. Thank you for fixing that.
comment:326 Changed 2 years ago by
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comment:327 in reply to: ↑ 324 Changed 2 years ago by
Replying to gh-mwageringel:
If no one is working on it yet, I will look into
multi_polynomial_ideal
andtoy_buchberger
.
Sure, but make sure to check #27791: closed but not yet merged into a beta release.
Edit: oh, sorry, that deals with multi_polynomial, and you were talking about multi_polynomial_ideal. I don't see any relevant tickets, so please go ahead.
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comment:329 Changed 2 years ago by
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in 8.8.b7:
less than 1 : 18 less than 2 : 25 less than 4 : 38 less than 8 : 41 less than 16 : 43 less than 64 : 44
In the 15 worst files, 92 broken doctests:
['src/sage/combinat/root_system/weyl_characters.py # 3 doctests failed', 'src/sage/combinat/set_partition_ordered.py # 3 doctests failed', 'src/sage/doctest/test.py # 3 doctests failed', 'src/sage/misc/sageinspect.py # 3 doctests failed', 'src/sage/rings/polynomial/multi_polynomial_ideal.py # 3 doctests failed', 'src/sage/rings/polynomial/toy_buchberger.py # 3 doctests failed', 'src/sage/matroids/graphic_matroid.py # 4 doctests failed', 'src/sage/misc/functional.py # 4 doctests failed', 'src/sage/repl/attach.py # 4 doctests failed', 'src/sage/combinat/root_system/weyl_group.py # 7 doctests failed', 'src/sage/graphs/generic_graph.py # 8 doctests failed', 'src/sage/symbolic/expression.pyx # 8 doctests failed', 'src/sage/misc/nested_class.pyx # 9 doctests failed', 'src/sage/rings/integer.pyx # 9 doctests failed', 'src/sage/matroids/matroid.pyx # 21 doctests failed']
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comment:335 Changed 2 years ago by
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Hadn't even seen this ticket; very nice.