Opened 13 months ago

Last modified 5 weeks ago

#26212 new task

py3: make all tests pass — at Version 176

Reported by: chapoton Owned by:
Priority: major Milestone:
Component: python3 Keywords:
Cc: vklein, embray, jmantysalo, gh-timokau Merged in:
Authors: Reviewers:
Report Upstream: N/A Work issues:
Branch: Commit:
Dependencies: Stopgaps:

Description (last modified by chapoton)

This ticket is used to keep track of the progress towards python3.

release files having failing doctests more than 100 from 10 to 100 from 1 to 10 failing doctests
8.4.b3 915 42 251 622 17972
8.4.b4 803 23 175 605 10921
8.4.b5 657 17 145 495 8509
8.4.b6 594 17 127 450 7706
8.4.b7 587 17 128 442 7678
8.4.rc0 524 16 119 389 6976
8.5.b0 461 6 94 361 4206
8.5.b1 414 3 76 335 3206
8.5.b2 370 1 66 303 2465
8.5.b3 339 1 62 276 2245
8.5.b4 312 0 58 254 1947
8.5.b5 295 0 51 244 1741
8.5.b6 264 0 43 221 1514
8.5.rc0 252 0 39 213 1393
8.6.b0 234 0 30 204 1163
8.6.b1 231 0 30 201 1146
8.6.rc0 232 0 28 204 1124

Folders where all tests pass (8.5.b5):

Folders with work in progress:

Change History (177)

comment:1 Changed 13 months ago by chapoton

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comment:10 Changed 13 months ago by jhpalmieri

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comment:12 Changed 13 months ago by chapoton

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comment:15 Changed 13 months ago by vklein

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comment:38 Changed 13 months ago by chapoton

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comment:64 Changed 12 months ago by chapoton

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comment:66 Changed 12 months ago by chapoton

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comment:67 Changed 12 months ago by chapoton

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comment:68 Changed 12 months ago by embray

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Hadn't even seen this ticket; very nice.

comment:69 Changed 12 months ago by vklein

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comment:70 Changed 12 months ago by chapoton

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comment:71 Changed 12 months ago by chapoton

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comment:72 Changed 12 months ago by chapoton

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comment:73 Changed 12 months ago by vklein

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comment:74 Changed 12 months ago by chapoton

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good progress on 8.5.b0

comment:75 Changed 12 months ago by chapoton

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comment:76 Changed 12 months ago by chapoton

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comment:77 Changed 12 months ago by chapoton

The six remaining files with many failures are

['sage -t --long src/sage/combinat/finite_state_machine.py  # 189 doctests failed',
 'sage -t --long src/sage/dynamics/arithmetic_dynamics/projective_ds.py  # 105 doctests failed',
 'sage -t --long src/sage/graphs/generic_graph.py  # 110 doctests failed',
 'sage -t --long src/sage/groups/lie_gps/nilpotent_lie_group.py  # 143 doctests failed',
 'sage -t --long src/sage/rings/padics/padic_lattice_element.py  # 167 doctests failed',
 'sage -t --long src/sage/rings/valuation/limit_valuation.py  # 106 doctests failed']

comment:78 Changed 12 months ago by chapoton

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comment:79 Changed 12 months ago by jhpalmieri

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comment:80 follow-up: Changed 12 months ago by jhpalmieri

For whoever wants to work on it, regarding

sage -t --long src/sage/combinat/finite_state_machine.py  # 189 doctests failed

about 150 of the failures can be cured by replacing 'iteritems' by 'items' in lines like

        elif hasattr(data, 'iteritems'):
            # data is a dict (or something similar),

I don't know if 'items' is the right attribute to check, or if it would actually be better to change to isinstance(data, dict). What other data structures are mean to be acceptable? What is "something similar" to a dict?

comment:81 Changed 12 months ago by chapoton

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comment:82 Changed 12 months ago by vklein

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comment:83 Changed 12 months ago by vklein

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comment:84 in reply to: ↑ 80 Changed 12 months ago by vklein

Replying to jhpalmieri:

For whoever wants to work on it, regarding ... I don't know if 'items' is the right attribute to check, or if it would actually be better to change to isinstance(data, dict). What other data structures are mean to be acceptable? What is "something similar" to a dict?

There is some custom "Mapping types" in sage like FreeModuleElement_generic_sparse, which implements items and iteritems but doesn't inherit from dict.

Changed 12 months ago by chapoton

tool to extract the data from patchbot log

comment:85 Changed 12 months ago by chapoton

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comment:86 Changed 12 months ago by chapoton

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comment:87 Changed 12 months ago by chapoton

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comment:88 Changed 12 months ago by chapoton

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comment:89 Changed 12 months ago by vklein

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comment:90 Changed 12 months ago by chapoton

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comment:91 Changed 12 months ago by chapoton

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comment:92 Changed 12 months ago by chapoton

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comment:93 Changed 12 months ago by chapoton

There was a regression in the manifolds folder (sigh)..

The 3 remaining files with more than 100 failing doctests are

['sage -t --long src/sage/combinat/finite_state_machine.py  # 182 doctests failed',
 'sage -t --long src/sage/graphs/generic_graph.py  # 109 doctests failed',
 'sage -t --long src/sage/rings/padics/padic_lattice_element.py  # 167 doctests failed']

The first one is already tackled in #26147 at least partially.

comment:94 Changed 12 months ago by chapoton

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comment:95 Changed 12 months ago by jhpalmieri

Regarding

'sage -t --long src/sage/rings/padics/padic_lattice_element.py  # 167 doctests failed'

I can reproduce those failures when I run ./sage -t ..., but (at least for the first few) not when I run Sage interactively. Odd.

comment:96 Changed 12 months ago by slabbe

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comment:97 Changed 12 months ago by chapoton

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comment:98 Changed 12 months ago by chapoton

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comment:99 Changed 12 months ago by chapoton

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comment:100 Changed 12 months ago by chapoton

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comment:101 Changed 12 months ago by chapoton

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comment:102 Changed 12 months ago by chapoton

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Top ten bad files in 8.5.b2 are

['sage -t --long src/sage/numerical/backends/cvxopt_sdp_backend.pyx  # 39 doctests failed',
 'sage -t --long src/sage/algebras/iwahori_hecke_algebra.py  # 40 doctests failed',
 'sage -t --long src/sage/numerical/mip.pyx  # 47 doctests failed',
 'sage -t --long src/doc/en/thematic_tutorials/sandpile.rst  # 49 doctests failed',
 'sage -t --long src/sage/rings/function_field/ideal.py  # 56 doctests failed',
 'sage -t --long src/sage/graphs/graph.py  # 59 doctests failed',
 'sage -t --long src/sage/graphs/connectivity.pyx  # 60 doctests failed',
 'sage -t --long src/sage/misc/explain_pickle.py  # 70 doctests failed',
 'sage -t --long src/sage/numerical/sdp.pyx  # 75 doctests failed',
 'sage -t --long src/sage/graphs/generic_graph.py  # 109 doctests failed']

comment:103 Changed 12 months ago by chapoton

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comment:104 Changed 12 months ago by chapoton

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comment:105 Changed 11 months ago by chapoton

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comment:108 Changed 11 months ago by chapoton

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comment:109 Changed 11 months ago by vklein

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comment:110 Changed 11 months ago by chapoton

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comment:111 Changed 11 months ago by chapoton

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comment:112 Changed 11 months ago by chapoton

  • Milestone changed from sage-8.4 to sage-8.5

comment:113 Changed 11 months ago by vklein

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comment:114 Changed 11 months ago by jmantysalo

  • Cc jmantysalo added

comment:115 Changed 11 months ago by chapoton

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comment:116 Changed 11 months ago by chapoton

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comment:117 Changed 11 months ago by chapoton

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comment:118 Changed 11 months ago by chapoton

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comment:119 Changed 11 months ago by chapoton

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comment:120 Changed 11 months ago by chapoton

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The top ten worse files in 8.5.b3 are

['sage -t --long src/sage/combinat/finite_state_machine.py  # 31 doctests failed',
 'sage -t --long src/sage/schemes/riemann_surfaces/riemann_surface.py  # 36 doctests failed',
 'sage -t --long src/sage/numerical/mip.pyx  # 47 doctests failed',
 'sage -t --long src/doc/en/thematic_tutorials/sandpile.rst  # 49 doctests failed',
 'sage -t --long src/sage/rings/function_field/ideal.py  # 56 doctests failed',
 'sage -t --long src/sage/graphs/graph.py  # 58 doctests failed',
 'sage -t --long src/sage/graphs/connectivity.pyx  # 59 doctests failed',
 'sage -t --long src/sage/rings/tate_algebra_element.pyx  # 63 doctests failed',
 'sage -t --long src/sage/misc/explain_pickle.py  # 70 doctests failed',
 'sage -t --long src/sage/graphs/generic_graph.py  # 115 doctests failed']

comment:121 Changed 11 months ago by chapoton

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comment:122 Changed 11 months ago by vklein

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comment:123 Changed 11 months ago by vklein

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comment:124 Changed 11 months ago by chapoton

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Top ten worst files in 8.5.b4 are:

src/sage/graphs/graph.py  # 30 doctests failed
src/sage/numerical/linear_functions.pyx  # 30 doctests failed
src/sage/combinat/finite_state_machine.py  # 31 doctests failed
src/sage/schemes/riemann_surfaces/riemann_surface.py  # 36 doctests failed
src/sage/numerical/mip.pyx  # 47 doctests failed
src/doc/en/thematic_tutorials/sandpile.rst  # 49 doctests failed
src/sage/graphs/connectivity.pyx  # 50 doctests failed
src/sage/rings/function_field/ideal.py  # 56 doctests failed
src/sage/misc/explain_pickle.py  # 70 doctests failed
src/sage/graphs/generic_graph.py  # 77 doctests failed

comment:125 Changed 11 months ago by chapoton

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comment:126 Changed 11 months ago by chapoton

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comment:127 Changed 11 months ago by chapoton

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comment:128 Changed 11 months ago by chapoton

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comment:129 Changed 11 months ago by vklein

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comment:130 Changed 11 months ago by chapoton

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comment:131 Changed 11 months ago by chapoton

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comment:132 Changed 11 months ago by chapoton

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comment:133 Changed 11 months ago by chapoton

Number of failing doctests in 8.5.beta4 by components

'en': 56, 'coding': 28, 'data_structures': 5, 'symbolic': 24, 'libs': 34,
 'schemes': 102, 'combinat': 292, 'dynamics': 39, 'interacts': 6, 'homology': 29,
 'plot': 5, 'functions': 5, 'matrix': 16, 'rings': 209, 'categories': 34,
 'docbuild': 2, 'algebras': 21, 'common': 1, 'calculus': 5, 'tests': 40,
 'matroids': 75, 'misc': 172, 'interfaces': 1, 'numerical': 206, 'modular': 82,
 'repl': 13, 'groups': 14, 'sandpiles': 22, 'game_theory': 11, 'structure': 6,
 'cpython': 7, 'sets': 6, 'geometry': 32, 'modules': 3, 'crypto': 13,
 'graphs': 292, 'ext': 8, 'doctest': 8, 'databases': 16

comment:134 Changed 11 months ago by chapoton

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comment:135 Changed 11 months ago by chapoton

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comment:136 Changed 11 months ago by chapoton

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comment:137 Changed 11 months ago by chapoton

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comment:138 Changed 11 months ago by chapoton

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comment:139 Changed 11 months ago by chapoton

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comment:140 Changed 11 months ago by chapoton

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comment:141 Changed 11 months ago by chapoton

Worst 15 files in 8.5.b5:

[' src/sage/homology/simplicial_complex.py  # 23 doctests failed',
 ' src/sage/numerical/linear_tensor_element.pyx  # 23 doctests failed',
 ' src/sage/matroids/matroid.pyx  # 24 doctests failed',
 ' src/sage/rings/integer.pyx  # 24 doctests failed',
 ' src/sage/misc/decorators.py  # 28 doctests failed',
 ' src/sage/numerical/linear_tensor_constraints.py  # 28 doctests failed',
 ' src/sage/combinat/rigged_configurations/kr_tableaux.py  # 30 doctests failed',
 ' src/sage/graphs/graph.py  # 30 doctests failed',
 ' src/sage/numerical/linear_functions.pyx  # 30 doctests failed',
 ' src/sage/schemes/riemann_surfaces/riemann_surface.py  # 36 doctests failed',
 ' src/sage/numerical/mip.pyx  # 47 doctests failed',
 ' src/doc/en/thematic_tutorials/sandpile.rst  # 49 doctests failed',
 ' src/sage/graphs/connectivity.pyx  # 49 doctests failed',
 ' src/sage/misc/explain_pickle.py  # 70 doctests failed',
 ' src/sage/graphs/generic_graph.py  # 79 doctests failed']

comment:142 Changed 11 months ago by chapoton

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and by components:

[('common', 1), ('interfaces', 1), ('docbuild', 2), ('coding', 2), ('modules', 4), 
('functions', 5), ('calculus', 5), ('plot', 5), ('data_structures', 5), ('structure',
 6), ('interacts', 6), ('sets', 6), ('cpython', 7), ('doctest', 8), ('ext', 8), 
('crypto', 13), ('geometry', 13), ('repl', 13), ('groups', 15), ('algebras', 16),
 ('matrix', 17), ('sandpiles', 22), ('symbolic', 26), ('homology', 30), ('libs', 34),
 ('categories', 35), ('tests', 40), ('dynamics', 40), ('en', 56), ('matroids', 73),
 ('schemes', 80), ('modular', 82), ('rings', 141), ('misc', 171), ('numerical', 206), 
('combinat', 240), ('graphs', 300)]
Last edited 11 months ago by chapoton (previous) (diff)

comment:143 Changed 11 months ago by chapoton

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comment:144 Changed 11 months ago by chapoton

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comment:145 Changed 11 months ago by chapoton

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comment:146 Changed 11 months ago by vklein

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comment:147 Changed 11 months ago by chapoton

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comment:148 Changed 11 months ago by chapoton

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comment:149 Changed 11 months ago by chapoton

worst 20 files in 8.5.b6:

['/sage/matroids/matroid.pyx  # 18 doctests failed',
 '/sage/combinat/finite_state_machine.py  # 20 doctests failed',
 '/sage/misc/classcall_metaclass.pyx  # 20 doctests failed',
 '/sage/numerical/linear_tensor.py  # 20 doctests failed',
 '/sage/dynamics/arithmetic_dynamics/wehlerK3.py  # 21 doctests failed',
 '/sage/rings/polynomial/multi_polynomial_ideal.py  # 21 doctests failed',
 '/sage/homology/simplicial_complex.py  # 22 doctests failed',
 '/sage/sandpiles/sandpile.py  # 22 doctests failed',
 '/sage/numerical/linear_tensor_element.pyx  # 23 doctests failed',
 '/sage/rings/integer.pyx  # 24 doctests failed',
 '/sage/misc/decorators.py  # 28 doctests failed',
 '/sage/numerical/linear_tensor_constraints.py  # 28 doctests failed',
 '/sage/graphs/graph.py  # 30 doctests failed',
 '/sage/numerical/linear_functions.pyx  # 30 doctests failed',
 '/sage/schemes/riemann_surfaces/riemann_surface.py  # 36 doctests failed',
 '/sage/numerical/mip.pyx  # 47 doctests failed',
 '/doc/en/thematic_tutorials/sandpile.rst  # 49 doctests failed',
 '/sage/graphs/connectivity.pyx  # 49 doctests failed',
 '/sage/misc/explain_pickle.py  # 70 doctests failed',
 '/sage/graphs/generic_graph.py  # 78 doctests failed']

comment:150 Changed 11 months ago by chapoton

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comment:151 Changed 11 months ago by chapoton

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comment:152 Changed 11 months ago by chapoton

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comment:153 Changed 11 months ago by chapoton

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comment:154 Changed 11 months ago by vklein

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comment:155 Changed 10 months ago by vklein

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comment:156 Changed 10 months ago by chapoton

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comment:157 Changed 10 months ago by chapoton

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comment:158 Changed 10 months ago by chapoton

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comment:159 Changed 10 months ago by chapoton

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15 worst offenders in 8.5.rc0:

['src/sage/dynamics/arithmetic_dynamics/wehlerK3.py  # 21 doctests failed',
 'src/sage/matroids/matroid.pyx  # 21 doctests failed',
 'src/sage/rings/polynomial/multi_polynomial_ideal.py  # 21 doctests failed',
 'src/sage/homology/simplicial_complex.py  # 22 doctests failed',
 'src/sage/sandpiles/sandpile.py  # 22 doctests failed',
 'src/sage/numerical/linear_tensor_element.pyx  # 23 doctests failed',
 'src/sage/misc/decorators.py  # 28 doctests failed',
 'src/sage/numerical/linear_tensor_constraints.py  # 28 doctests failed',
 'src/sage/graphs/graph.py  # 30 doctests failed',
 'src/sage/numerical/linear_functions.pyx  # 30 doctests failed',
 'src/sage/schemes/riemann_surfaces/riemann_surface.py  # 36 doctests failed',
 'src/sage/numerical/mip.pyx  # 47 doctests failed',
 'src/doc/en/thematic_tutorials/sandpile.rst  # 49 doctests failed',
 'src/sage/misc/explain_pickle.py  # 70 doctests failed',
 'src/sage/graphs/generic_graph.py  # 74 doctests failed']

comment:160 Changed 10 months ago by chapoton

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comment:161 Changed 10 months ago by vklein

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comment:162 Changed 10 months ago by chapoton

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comment:163 Changed 10 months ago by chapoton

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comment:164 Changed 10 months ago by chapoton

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comment:165 Changed 10 months ago by chapoton

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comment:166 Changed 10 months ago by chapoton

15 worst offenders in 8.6.b0:

['src/sage/categories/finite_posets.py  # 15 doctests failed',
 'src/sage/combinat/matrices/hadamard_matrix.py  # 15 doctests failed',
 'src/sage/combinat/finite_state_machine.py  # 19 doctests failed',
 'src/sage/misc/classcall_metaclass.pyx  # 20 doctests failed',
 'src/sage/dynamics/arithmetic_dynamics/wehlerK3.py  # 21 doctests failed',
 'src/sage/rings/polynomial/multi_polynomial_ideal.py  # 21 doctests failed',
 'src/sage/sandpiles/sandpile.py  # 22 doctests failed',
 'src/sage/matroids/matroid.pyx  # 23 doctests failed',
 'src/sage/homology/simplicial_complex.py  # 24 doctests failed',
 'src/sage/graphs/graph.py  # 28 doctests failed',
 'src/sage/misc/decorators.py  # 28 doctests failed',
 'src/sage/schemes/riemann_surfaces/riemann_surface.py  # 36 doctests failed',
 'src/doc/en/thematic_tutorials/sandpile.rst  # 49 doctests failed',
 'src/sage/graphs/generic_graph.py  # 68 doctests failed',
 'src/sage/misc/explain_pickle.py  # 70 doctests failed']
Last edited 10 months ago by chapoton (previous) (diff)

comment:167 Changed 10 months ago by chapoton

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maybe due to the upgrade of gap, there is a regression:

sage -t --long src/sage/groups/matrix_gps/finitely_generated.py
  # 3 doctests failed

comment:168 Changed 10 months ago by gh-timokau

  • Cc gh-timokau added

comment:169 Changed 10 months ago by chapoton

  • Milestone changed from sage-8.5 to sage-8.7

comment:170 Changed 10 months ago by chapoton

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comment:171 Changed 10 months ago by chapoton

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comment:172 Changed 10 months ago by chapoton

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comment:173 Changed 10 months ago by chapoton

worst 15 files in 8.6.b1:

['src/sage/categories/finite_posets.py  # 15 doctests failed',
 'src/sage/combinat/matrices/hadamard_matrix.py  # 15 doctests failed',
 'src/sage/matroids/matroid.pyx  # 17 doctests failed',
 'src/sage/combinat/finite_state_machine.py  # 19 doctests failed',
 'src/sage/misc/classcall_metaclass.pyx  # 20 doctests failed',
 'src/sage/dynamics/arithmetic_dynamics/wehlerK3.py  # 21 doctests failed',
 'src/sage/rings/polynomial/multi_polynomial_ideal.py  # 21 doctests failed',
 'src/sage/sandpiles/sandpile.py  # 22 doctests failed',
 'src/sage/homology/simplicial_complex.py  # 23 doctests failed',
 'src/sage/graphs/graph.py  # 28 doctests failed',
 'src/sage/misc/decorators.py  # 28 doctests failed',
 'src/sage/schemes/riemann_surfaces/riemann_surface.py  # 36 doctests failed',
 'src/doc/en/thematic_tutorials/sandpile.rst  # 49 doctests failed',
 'src/sage/graphs/generic_graph.py  # 63 doctests failed',
 'src/sage/misc/explain_pickle.py  # 70 doctests failed']

comment:174 Changed 10 months ago by chapoton

  • Description modified (diff)

comment:175 Changed 10 months ago by chapoton

  • Description modified (diff)

comment:176 Changed 9 months ago by chapoton

  • Description modified (diff)
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