Opened 4 years ago
Closed 2 years ago
#26212 closed task (worksforme)
py3: make all tests pass
Reported by: | chapoton | Owned by: | |
---|---|---|---|
Priority: | major | Milestone: | sage-duplicate/invalid/wontfix |
Component: | python3 | Keywords: | |
Cc: | vklein, embray, jmantysalo, gh-timokau | Merged in: | |
Authors: | Reviewers: | ||
Report Upstream: | N/A | Work issues: | |
Branch: | Commit: | ||
Dependencies: | Stopgaps: |
Description (last modified by )
This ticket is used to keep track of the progress towards python3.
As this ticket is too long, final steps are moved to #28298
release | files having failing doctests | more than 100 | from 10 to 100 | from 1 to 10 | failing doctests |
8.4.b3 | 915 | 42 | 251 | 622 | 17972 |
8.4.b4 | 803 | 23 | 175 | 605 | 10921 |
8.4.b5 | 657 | 17 | 145 | 495 | 8509 |
8.4.b6 | 594 | 17 | 127 | 450 | 7706 |
8.4.b7 | 587 | 17 | 128 | 442 | 7678 |
8.4.rc0 | 524 | 16 | 119 | 389 | 6976 |
8.5.b0 | 461 | 6 | 94 | 361 | 4206 |
8.5.b1 | 414 | 3 | 76 | 335 | 3206 |
8.5.b2 | 370 | 1 | 66 | 303 | 2465 |
8.5.b3 | 339 | 1 | 62 | 276 | 2245 |
8.5.b4 | 312 | 0 | 58 | 254 | 1947 |
8.5.b5 | 295 | 0 | 51 | 244 | 1741 |
8.5.b6 | 264 | 0 | 43 | 221 | 1514 |
8.5.rc0 | 252 | 0 | 39 | 213 | 1393 |
8.6.b0 | 234 | 0 | 30 | 204 | 1163 |
8.6.b1 | 231 | 0 | 30 | 201 | 1146 |
8.6.rc0 | 232 | 0 | 28 | 204 | 1124 |
8.6.rc1 | 236 | 0 | 30 | 206 | 1136 |
8.7.b0 | 240 | 1 | 38 | 201 | 1605 |
8.7.b1 | 200 | 0 | 23 | 177 | 866 |
8.7.b2 | 198 | 0 | 24 | 174 | 863 |
8.7.b3 | 166 | 0 | 20 | 146 | 717 |
8.7.b4 | 165 | 0 | 19 | 146 | 703 |
8.7.b5 | 143 | 0 | 12 | 131 | 562 |
8.7.b6 | 137 | 0 | 8 | 129 | 464 |
8.7.b7 | 122 | 0 | 8 | 114 | 447 |
8.7.rc0 | 105 | 0 | 7 | 98 | 384 |
8.8.b0 | 102 | 0 | 7 | 95 | 370 |
Now with python 3.7.3:
release | files having failing doctests | more than 100 | from 10 to 100 | from 1 to 10 | failing doctests |
8.8.b1 | 105 | 0 | 6 | 99 | 382 |
8.8.b2 | 94 | 0 | 6 | 88 | 324 |
8.8.b3 | 82 | 0 | 6 | 76 | 282 |
8.8.b4 | 77 | 0 | 2 | 75 | 246 |
8.8.b5 | 56 | 0 | 2 | 54 | 173 |
8.8.b6 | 49 | 0 | 1 | 48 | 151 |
8.8.b7 | 44 | 0 | 1 | 43 | 136 |
8.8.rc0 | 32 | 0 | 0 | 32 | 92 |
8.9.b0 | 22 | 0 | 0 | 22 | 71 |
8.9.b2 | 18 | 0 | 0 | 18 | 58 |
8.9.b3 | 15 | 0 | 0 | 15 | 47 |
8.9.b4 | 12 | 0 | 0 | 12 | 33 |
8.9.b5 | 8 | 0 | 0 | 8 | 18 |
8.9.b7 | 5 | 0 | 0 | 5 | 15 |
8.9.b9 | 4 | 0 | 0 | 4 | 14 |
8.9.rc0 | 3 | 0 | 0 | 3 | 7 |
Folders where all tests pass
- algebras #26316 #26399 #26279 #26646 #26688 #26766 #27414 #27415 (final)
- algebras/steenrod ✔ #26219 and #26220
- arith #26208 ✔
- calculus #26751 #26988 (final)
- categories #26545 #26780 #27349 #27541 #27732 (remains 8) #27757 (final?)
- coding #26026 #26765 (final)
- combinat/cluster_algebra_quiver #27517 #27854 (2 files and 10 tests)
- combinat/crystals #27945 #27977 (final)
- combinat/designs #26430, #26837 (regression)
- combinat/finite_state_machine #26147, #26468, #26737, #27667 #27679
- combinat/posets #26998 (final)
- combinat/rigged_configurations #26805
- combinat/sf (#26220 +) #26215
- combinat/species #26328, #26610, #27072 (final)
- combinat/subset #26510 #27727
- combinat/words #26362, #26458, #26473, #26590
- cpython #26855, #27964, #27886
- crypto #26398 #27580 (final)
- databases #26702 #26704
- data_structures #24852 #27433 #27439 (final)
- docs ✔ #26310
- doc/en #26346 #27698 #27758 (final)
- dynamics #27453 #26982
- dynamics/arithmetic_dynamics #27779 (remains 1)
- ext #27776 #27975
- features ✔
- functions #24758, #26591 #26865 #26770 #25979 #27812
- finance #26213 ✔
- games ✔
- game_theory #26429 #26738 (final)
- geometry #26726 #27772 #27965,#28235
- graphs #26431 #26447 #26527 #26640 #26645 #26846 #27125 #27232 #27435
- groups #26799, #27830 (final)
- groups/lie_gps #26518
- groups/matrix_gps #26400 (regression) #27459 (final again)
- homology #27452 (final)
- interacts #27117, #27157
- interfaces #26314 #27904 (1 file and 1 test)
- knots ✔
- libs/gsl
- lfunctions ✔
- logic #26214 ✔
- manifolds #26475
- matrix/ #26236 #26716, #27585, #27615 (final)
- matroids #26767, #27378, #27771, #27787, #27889 (final)
- media ✔
- modular #26382, #26611, #26967 #25301 #27145 #27313 (final)
- modular/modsym #26673 #27177
- modules #26276 #27115, #27466 (final)
- monoids ✔ #26294
- parallel ✔
- plot #26210 #26299 #26301 #26321, #27126 (final)
- probability #26216 ✔
- quadratic_forms/ #26224 ✔
- quivers #26211 ✔
- rings #26697 #27048 #27440 #27650 #27767 #28112 #28139
- rings/asymptotic #26146
- rings/number_field #26263, #26619
- rings/function_field #26721 #26764 (final)
- rings/padics #27612 (final)
- rings/polynomial #26670 #26760 #26909 #26792 #27674 #27768 #27791 #27908 #27909 #27914
- rings/valuation #27868
- rings (power series) #26539
- sandpiles #26016 #26628 #26722
- sat #26543 ✔
- schemes #27049 #27449 #27471 #27619 (final)
- schemes/toric #26664
- schemes/curves
- schemes/product_projective
- schemes/elliptic_curves #26536, #26529, #26570, #26594 #26913 #26914 #27432 #27520 #27539
- server ✔
- sets #26659 #27456 #27794 (final)
- stats #26401 ✔
- structure #25694 #26768
- tensor #26295, #26601
- typeset ✔
- sage_setup #27075, #27073
Fragile folders (still fails on the reference machine)
These doctests pass when run on each file alone.
- repl #26881
┗ /attach.py # 4
- numerical #24740, #24741, #26631, #27773 and #27774 #27342 #27614
┗ backends/generic_backend.pyx # 2
- libs #26665 #27275 #27383 #27360 #27465 #27588 #27630
┗ singular/function.pyx # 1 ┗ eclib/interface.py # 1 (line 597)
- FLINT issue in src/sage/rings/polynomial/polynomial_rational_flint.pyx
Folders with work in progress
- combinat/root_system #26649 #27654 #27967 #28167 #28227
┣ non_symmetric_macdonald_polynomials.py # 1 ┣ weyl_characters.py # 3 ┗ weyl_group.py # 7
- combinat #26535 #26671 #26719 #26778 #26781 #26917 #26918 #27013 #26592 #27710 #27777 #27930 #28079 #28177 #28210
see above for the remaining issues
- doctest #27775 #27976 #28232
┗ test.py # 2
- misc #26312, #26390 #26674 #26720 #27001 #27065 #27301 #27390 #27431 #27691 #27692 #27693 #27971 #28035 #28138
┣ nested_class.pyx # 9
- symbolic #27457 #27885 #28140 #28219
┗ expression.pyx # 1 hash + 2 flaky in lines 11633 and 11635
- tests #27440 #28002 (see below for the remaining issues)
- tests/french_book #26495 #23572 #27574 #27651 #27668 #27727 #28067
┣ graphtheory_doctest.py # 1 ┗ sol/graphtheory_doctest.py # 1
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The six remaining files with many failures are
['sage -t --long src/sage/combinat/finite_state_machine.py # 189 doctests failed', 'sage -t --long src/sage/dynamics/arithmetic_dynamics/projective_ds.py # 105 doctests failed', 'sage -t --long src/sage/graphs/generic_graph.py # 110 doctests failed', 'sage -t --long src/sage/groups/lie_gps/nilpotent_lie_group.py # 143 doctests failed', 'sage -t --long src/sage/rings/padics/padic_lattice_element.py # 167 doctests failed', 'sage -t --long src/sage/rings/valuation/limit_valuation.py # 106 doctests failed']
comment:78 Changed 4 years ago by
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comment:80 follow-up: ↓ 84 Changed 4 years ago by
For whoever wants to work on it, regarding
sage -t --long src/sage/combinat/finite_state_machine.py # 189 doctests failed
about 150 of the failures can be cured by replacing 'iteritems' by 'items' in lines like
elif hasattr(data, 'iteritems'): # data is a dict (or something similar),
I don't know if 'items' is the right attribute to check, or if it would actually be better to change to isinstance(data, dict)
. What other data structures are mean to be acceptable? What is "something similar" to a dict?
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comment:84 in reply to: ↑ 80 Changed 4 years ago by
Replying to jhpalmieri:
For whoever wants to work on it, regarding ... I don't know if 'items' is the right attribute to check, or if it would actually be better to change to
isinstance(data, dict)
. What other data structures are mean to be acceptable? What is "something similar" to a dict?
There is some custom "Mapping types" in sage like FreeModuleElement_generic_sparse
, which implements items
and iteritems
but doesn't inherit from dict
.
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There was a regression in the manifolds folder (sigh)..
The 3 remaining files with more than 100 failing doctests are
['sage -t --long src/sage/combinat/finite_state_machine.py # 182 doctests failed', 'sage -t --long src/sage/graphs/generic_graph.py # 109 doctests failed', 'sage -t --long src/sage/rings/padics/padic_lattice_element.py # 167 doctests failed']
The first one is already tackled in #26147 at least partially.
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Regarding
'sage -t --long src/sage/rings/padics/padic_lattice_element.py # 167 doctests failed'
I can reproduce those failures when I run ./sage -t ...
, but (at least for the first few) not when I run Sage interactively. Odd.
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Top ten bad files in 8.5.b2 are
['sage -t --long src/sage/numerical/backends/cvxopt_sdp_backend.pyx # 39 doctests failed', 'sage -t --long src/sage/algebras/iwahori_hecke_algebra.py # 40 doctests failed', 'sage -t --long src/sage/numerical/mip.pyx # 47 doctests failed', 'sage -t --long src/doc/en/thematic_tutorials/sandpile.rst # 49 doctests failed', 'sage -t --long src/sage/rings/function_field/ideal.py # 56 doctests failed', 'sage -t --long src/sage/graphs/graph.py # 59 doctests failed', 'sage -t --long src/sage/graphs/connectivity.pyx # 60 doctests failed', 'sage -t --long src/sage/misc/explain_pickle.py # 70 doctests failed', 'sage -t --long src/sage/numerical/sdp.pyx # 75 doctests failed', 'sage -t --long src/sage/graphs/generic_graph.py # 109 doctests failed']
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- Milestone changed from sage-8.4 to sage-8.5
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- Cc jmantysalo added
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The top ten worse files in 8.5.b3 are
['sage -t --long src/sage/combinat/finite_state_machine.py # 31 doctests failed', 'sage -t --long src/sage/schemes/riemann_surfaces/riemann_surface.py # 36 doctests failed', 'sage -t --long src/sage/numerical/mip.pyx # 47 doctests failed', 'sage -t --long src/doc/en/thematic_tutorials/sandpile.rst # 49 doctests failed', 'sage -t --long src/sage/rings/function_field/ideal.py # 56 doctests failed', 'sage -t --long src/sage/graphs/graph.py # 58 doctests failed', 'sage -t --long src/sage/graphs/connectivity.pyx # 59 doctests failed', 'sage -t --long src/sage/rings/tate_algebra_element.pyx # 63 doctests failed', 'sage -t --long src/sage/misc/explain_pickle.py # 70 doctests failed', 'sage -t --long src/sage/graphs/generic_graph.py # 115 doctests failed']
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Top ten worst files in 8.5.b4 are:
src/sage/graphs/graph.py # 30 doctests failed src/sage/numerical/linear_functions.pyx # 30 doctests failed src/sage/combinat/finite_state_machine.py # 31 doctests failed src/sage/schemes/riemann_surfaces/riemann_surface.py # 36 doctests failed src/sage/numerical/mip.pyx # 47 doctests failed src/doc/en/thematic_tutorials/sandpile.rst # 49 doctests failed src/sage/graphs/connectivity.pyx # 50 doctests failed src/sage/rings/function_field/ideal.py # 56 doctests failed src/sage/misc/explain_pickle.py # 70 doctests failed src/sage/graphs/generic_graph.py # 77 doctests failed
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Number of failing doctests in 8.5.beta4 by components
'en': 56, 'coding': 28, 'data_structures': 5, 'symbolic': 24, 'libs': 34, 'schemes': 102, 'combinat': 292, 'dynamics': 39, 'interacts': 6, 'homology': 29, 'plot': 5, 'functions': 5, 'matrix': 16, 'rings': 209, 'categories': 34, 'docbuild': 2, 'algebras': 21, 'common': 1, 'calculus': 5, 'tests': 40, 'matroids': 75, 'misc': 172, 'interfaces': 1, 'numerical': 206, 'modular': 82, 'repl': 13, 'groups': 14, 'sandpiles': 22, 'game_theory': 11, 'structure': 6, 'cpython': 7, 'sets': 6, 'geometry': 32, 'modules': 3, 'crypto': 13, 'graphs': 292, 'ext': 8, 'doctest': 8, 'databases': 16
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Worst 15 files in 8.5.b5:
[' src/sage/homology/simplicial_complex.py # 23 doctests failed', ' src/sage/numerical/linear_tensor_element.pyx # 23 doctests failed', ' src/sage/matroids/matroid.pyx # 24 doctests failed', ' src/sage/rings/integer.pyx # 24 doctests failed', ' src/sage/misc/decorators.py # 28 doctests failed', ' src/sage/numerical/linear_tensor_constraints.py # 28 doctests failed', ' src/sage/combinat/rigged_configurations/kr_tableaux.py # 30 doctests failed', ' src/sage/graphs/graph.py # 30 doctests failed', ' src/sage/numerical/linear_functions.pyx # 30 doctests failed', ' src/sage/schemes/riemann_surfaces/riemann_surface.py # 36 doctests failed', ' src/sage/numerical/mip.pyx # 47 doctests failed', ' src/doc/en/thematic_tutorials/sandpile.rst # 49 doctests failed', ' src/sage/graphs/connectivity.pyx # 49 doctests failed', ' src/sage/misc/explain_pickle.py # 70 doctests failed', ' src/sage/graphs/generic_graph.py # 79 doctests failed']
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and by components:
[('common', 1), ('interfaces', 1), ('docbuild', 2), ('coding', 2), ('modules', 4), ('functions', 5), ('calculus', 5), ('plot', 5), ('data_structures', 5), ('structure', 6), ('interacts', 6), ('sets', 6), ('cpython', 7), ('doctest', 8), ('ext', 8), ('crypto', 13), ('geometry', 13), ('repl', 13), ('groups', 15), ('algebras', 16), ('matrix', 17), ('sandpiles', 22), ('symbolic', 26), ('homology', 30), ('libs', 34), ('categories', 35), ('tests', 40), ('dynamics', 40), ('en', 56), ('matroids', 73), ('schemes', 80), ('modular', 82), ('rings', 141), ('misc', 171), ('numerical', 206), ('combinat', 240), ('graphs', 300)]
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worst 20 files in 8.5.b6:
['/sage/matroids/matroid.pyx # 18 doctests failed', '/sage/combinat/finite_state_machine.py # 20 doctests failed', '/sage/misc/classcall_metaclass.pyx # 20 doctests failed', '/sage/numerical/linear_tensor.py # 20 doctests failed', '/sage/dynamics/arithmetic_dynamics/wehlerK3.py # 21 doctests failed', '/sage/rings/polynomial/multi_polynomial_ideal.py # 21 doctests failed', '/sage/homology/simplicial_complex.py # 22 doctests failed', '/sage/sandpiles/sandpile.py # 22 doctests failed', '/sage/numerical/linear_tensor_element.pyx # 23 doctests failed', '/sage/rings/integer.pyx # 24 doctests failed', '/sage/misc/decorators.py # 28 doctests failed', '/sage/numerical/linear_tensor_constraints.py # 28 doctests failed', '/sage/graphs/graph.py # 30 doctests failed', '/sage/numerical/linear_functions.pyx # 30 doctests failed', '/sage/schemes/riemann_surfaces/riemann_surface.py # 36 doctests failed', '/sage/numerical/mip.pyx # 47 doctests failed', '/doc/en/thematic_tutorials/sandpile.rst # 49 doctests failed', '/sage/graphs/connectivity.pyx # 49 doctests failed', '/sage/misc/explain_pickle.py # 70 doctests failed', '/sage/graphs/generic_graph.py # 78 doctests failed']
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15 worst offenders in 8.5.rc0:
['src/sage/dynamics/arithmetic_dynamics/wehlerK3.py # 21 doctests failed', 'src/sage/matroids/matroid.pyx # 21 doctests failed', 'src/sage/rings/polynomial/multi_polynomial_ideal.py # 21 doctests failed', 'src/sage/homology/simplicial_complex.py # 22 doctests failed', 'src/sage/sandpiles/sandpile.py # 22 doctests failed', 'src/sage/numerical/linear_tensor_element.pyx # 23 doctests failed', 'src/sage/misc/decorators.py # 28 doctests failed', 'src/sage/numerical/linear_tensor_constraints.py # 28 doctests failed', 'src/sage/graphs/graph.py # 30 doctests failed', 'src/sage/numerical/linear_functions.pyx # 30 doctests failed', 'src/sage/schemes/riemann_surfaces/riemann_surface.py # 36 doctests failed', 'src/sage/numerical/mip.pyx # 47 doctests failed', 'src/doc/en/thematic_tutorials/sandpile.rst # 49 doctests failed', 'src/sage/misc/explain_pickle.py # 70 doctests failed', 'src/sage/graphs/generic_graph.py # 74 doctests failed']
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comment:166 Changed 3 years ago by
15 worst offenders in 8.6.b0:
['src/sage/categories/finite_posets.py # 15 doctests failed', 'src/sage/combinat/matrices/hadamard_matrix.py # 15 doctests failed', 'src/sage/combinat/finite_state_machine.py # 19 doctests failed', 'src/sage/misc/classcall_metaclass.pyx # 20 doctests failed', 'src/sage/dynamics/arithmetic_dynamics/wehlerK3.py # 21 doctests failed', 'src/sage/rings/polynomial/multi_polynomial_ideal.py # 21 doctests failed', 'src/sage/sandpiles/sandpile.py # 22 doctests failed', 'src/sage/matroids/matroid.pyx # 23 doctests failed', 'src/sage/homology/simplicial_complex.py # 24 doctests failed', 'src/sage/graphs/graph.py # 28 doctests failed', 'src/sage/misc/decorators.py # 28 doctests failed', 'src/sage/schemes/riemann_surfaces/riemann_surface.py # 36 doctests failed', 'src/doc/en/thematic_tutorials/sandpile.rst # 49 doctests failed', 'src/sage/graphs/generic_graph.py # 68 doctests failed', 'src/sage/misc/explain_pickle.py # 70 doctests failed']
comment:167 Changed 3 years ago by
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maybe due to the upgrade of gap, there is a regression:
sage -t --long src/sage/groups/matrix_gps/finitely_generated.py # 3 doctests failed
comment:168 Changed 3 years ago by
- Cc gh-timokau added
comment:169 Changed 3 years ago by
- Milestone changed from sage-8.5 to sage-8.7
comment:170 Changed 3 years ago by
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comment:171 Changed 3 years ago by
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comment:173 Changed 3 years ago by
worst 15 files in 8.6.b1:
['src/sage/categories/finite_posets.py # 15 doctests failed', 'src/sage/combinat/matrices/hadamard_matrix.py # 15 doctests failed', 'src/sage/matroids/matroid.pyx # 17 doctests failed', 'src/sage/combinat/finite_state_machine.py # 19 doctests failed', 'src/sage/misc/classcall_metaclass.pyx # 20 doctests failed', 'src/sage/dynamics/arithmetic_dynamics/wehlerK3.py # 21 doctests failed', 'src/sage/rings/polynomial/multi_polynomial_ideal.py # 21 doctests failed', 'src/sage/sandpiles/sandpile.py # 22 doctests failed', 'src/sage/homology/simplicial_complex.py # 23 doctests failed', 'src/sage/graphs/graph.py # 28 doctests failed', 'src/sage/misc/decorators.py # 28 doctests failed', 'src/sage/schemes/riemann_surfaces/riemann_surface.py # 36 doctests failed', 'src/doc/en/thematic_tutorials/sandpile.rst # 49 doctests failed', 'src/sage/graphs/generic_graph.py # 63 doctests failed', 'src/sage/misc/explain_pickle.py # 70 doctests failed']
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comment:177 Changed 3 years ago by
files where failing doctests have re-appeared (regressions):
['src/sage/categories/crystals.py', 'src/sage/matroids/circuit_closures_matroid.pyx', 'src/sage/matroids/dual_matroid.py']
file where failing doctests have disappeared (progress):
['src/sage/misc/decorators.py', 'src/sage/rings/polynomial/laurent_polynomial.pyx']
so this is a net loss of 1 file
comment:178 Changed 3 years ago by
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comment:182 Changed 3 years ago by
regressions in
'sage -t --long src/sage/combinat/multiset_partition_into_sets_ordered.py', 'sage -t --long src/sage/combinat/set_partition.py', 'sage -t --long src/sage/dynamics/arithmetic_dynamics/endPN_automorphism_group.py', 'sage -t --long src/sage/graphs/spanning_tree.pyx', 'sage -t --long src/sage/modules/multi_filtered_vector_space.py', 'sage -t --long src/sage/rings/invariants/invariant_theory.py'
and progress in
'sage -t --long src/sage/matrix/compute_J_ideal.py', 'sage -t --long src/sage/matroids/circuit_closures_matroid.pyx'}
so this a net loss of 4 files
comment:183 Changed 3 years ago by
I don't have any doctest error with py3 for sage -t --long src/sage/graphs/spanning_tree.pyx
. Can you share what you get. Thanks.
comment:184 Changed 3 years ago by
This and other failures can be seen in the unique patchbot report running python3 on ticket 0:
https://patchbot.sagemath.org/ticket/0/
sage -t --long src/sage/graphs/spanning_tree.pyx ********************************************************************** File "src/sage/graphs/spanning_tree.pyx", line 188, in sage.graphs.spanning_tree.kruskal Failed example: sorted(kruskal(G, check=True)) Expected: [('a', 'b', 4), ('a', 'h', 8), ('c', 'd', 7), ('c', 'f', 4), ('c', 'i', 2), ('d', 'e', 9), ('f', 'g', 2), ('g', 'h', 1)] Got: [('a', 'b', 4), ('b', 'c', 8), ('c', 'd', 7), ('c', 'f', 4), ('c', 'i', 2), ('d', 'e', 9), ('f', 'g', 2), ('g', 'h', 1)] ********************************************************************** 1 item had failures: 1 of 45 in sage.graphs.spanning_tree.kruskal [83 tests, 1 failure, 0.60 s]
comment:185 Changed 3 years ago by
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comment:187 Changed 3 years ago by
See #27059 for of fix of the issue of #comment:184
comment:188 Changed 3 years ago by
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comment:189 Changed 3 years ago by
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comment:190 Changed 3 years ago by
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massive regression in 8.7.beta0, in particular here:
sage -t --long src/sage/schemes/elliptic_curves/ell_curve_isogeny.py # 204 doctests failed
comment:191 Changed 3 years ago by
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comment:192 Changed 3 years ago by
Worst 15 files in 8.7.beta0 (once the large regression in isogenies is fixed):
'sage -t --long src/sage/rings/polynomial/multi_polynomial_sequence.py # 12 doctests failed', 'sage -t --long src/sage/symbolic/constants.py # 12 doctests failed', 'sage -t --long src/sage/tests/french_book/mpoly.py # 13 doctests failed', 'sage -t --long src/sage/graphs/digraph.py # 14 doctests failed', 'sage -t --long src/sage/categories/finite_posets.py # 15 doctests failed', 'sage -t --long src/sage/combinat/finite_state_machine.py # 19 doctests failed', 'sage -t --long src/sage/matroids/matroid.pyx # 19 doctests failed', 'sage -t --long src/sage/misc/classcall_metaclass.pyx # 20 doctests failed', 'sage -t --long src/sage/dynamics/arithmetic_dynamics/wehlerK3.py # 21 doctests failed', 'sage -t --long src/sage/rings/polynomial/multi_polynomial_ideal.py # 21 doctests failed', 'sage -t --long src/sage/sandpiles/sandpile.py # 22 doctests failed', 'sage -t --long src/sage/schemes/riemann_surfaces/riemann_surface.py # 36 doctests failed', 'sage -t --long src/doc/en/thematic_tutorials/sandpile.rst # 49 doctests failed', 'sage -t --long src/sage/graphs/generic_graph.py # 51 doctests failed', 'sage -t --long src/sage/misc/explain_pickle.py # 70 doctests failed'
comment:193 Changed 3 years ago by
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comment:196 Changed 3 years ago by
worst 15 files in 8.7.b1:
'src/sage/matroids/graphic_matroid.py # 11 doctests failed', 'src/sage/schemes/product_projective/point.py # 11 doctests failed', 'src/sage/symbolic/expression.pyx # 11 doctests failed', 'src/sage/rings/polynomial/multi_polynomial_sequence.py # 12 doctests failed', 'src/sage/symbolic/constants.py # 12 doctests failed', 'src/sage/modular/modform/element.py # 13 doctests failed', 'src/sage/tests/french_book/mpoly.py # 13 doctests failed', 'src/sage/categories/finite_posets.py # 15 doctests failed', 'src/sage/combinat/finite_state_machine.py # 19 doctests failed', 'src/sage/misc/classcall_metaclass.pyx # 20 doctests failed', 'src/sage/rings/polynomial/multi_polynomial_ideal.py # 20 doctests failed', 'src/sage/dynamics/arithmetic_dynamics/wehlerK3.py # 21 doctests failed', 'src/sage/matroids/matroid.pyx # 21 doctests failed', 'src/sage/graphs/generic_graph.py # 50 doctests failed', 'src/sage/misc/explain_pickle.py # 70 doctests failed'
comment:197 Changed 3 years ago by
That is some impressive progress! Good work.
comment:198 Changed 3 years ago by
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comment:207 Changed 3 years ago by
Worst 15 files in 8.7.b3:
['src/sage/tests/french_book/programmation_doctest.py # 10 doctests failed', 'src/sage/matroids/graphic_matroid.py # 11 doctests failed', 'src/sage/schemes/product_projective/point.py # 11 doctests failed', 'src/sage/rings/polynomial/multi_polynomial_sequence.py # 12 doctests failed', 'src/sage/symbolic/constants.py # 12 doctests failed', 'src/sage/tests/french_book/mpoly.py # 13 doctests failed', 'src/sage/graphs/digraph.py # 14 doctests failed', 'src/sage/categories/finite_posets.py # 15 doctests failed', 'src/sage/combinat/finite_state_machine.py # 19 doctests failed', 'src/sage/misc/classcall_metaclass.pyx # 20 doctests failed', 'src/sage/dynamics/arithmetic_dynamics/wehlerK3.py # 21 doctests failed', 'src/sage/matroids/matroid.pyx # 21 doctests failed', 'src/sage/rings/polynomial/multi_polynomial_ideal.py # 21 doctests failed', 'src/sage/graphs/generic_graph.py # 30 doctests failed', 'src/sage/misc/explain_pickle.py # 70 doctests failed']
comment:208 Changed 3 years ago by
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comment:211 Changed 3 years ago by
Worst 15 files in 8.7.b4:
'src/sage/symbolic/expression.pyx # 10 doctests failed', 'src/sage/matroids/graphic_matroid.py # 11 doctests failed', 'src/sage/schemes/product_projective/point.py # 11 doctests failed', 'src/sage/rings/polynomial/multi_polynomial_sequence.py # 12 doctests failed', 'src/sage/symbolic/constants.py # 12 doctests failed', 'src/sage/matrix/matrix_polynomial_dense.pyx # 14 doctests failed', 'src/sage/tests/books/computational-mathematics-with-sagemath/mpoly_doctest.py # 14 doctests failed', 'src/sage/categories/finite_posets.py # 15 doctests failed', 'src/sage/graphs/generic_graph.py # 18 doctests failed', 'src/sage/combinat/finite_state_machine.py # 19 doctests failed', 'src/sage/misc/classcall_metaclass.pyx # 20 doctests failed', 'src/sage/dynamics/arithmetic_dynamics/wehlerK3.py # 21 doctests failed', 'src/sage/matroids/matroid.pyx # 21 doctests failed', 'src/sage/rings/polynomial/multi_polynomial_ideal.py # 21 doctests failed', 'src/sage/misc/explain_pickle.py # 70 doctests failed'
comment:212 Changed 3 years ago by
Re
'src/sage/symbolic/constants.py # 12 doctests failed',
I only see 6 failed doctests (this is on OS X; is it platform dependent?).
comment:213 Changed 3 years ago by
There are certainly some differences between plateforms and other factors. For instance, I see this, which is not in the reported worst 15:
sage -t --long src/sage/graphs/digraph.py # 14 doctests failed
I had 14 with 8.7.beta1, only 7 with beta2 and beta3, and now 14 again. All these failed doctests are related to the order of items in the output. See #27170.
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worst 15 in 8.7.b5:
['src/sage/numerical/backends/cvxopt_backend.pyx # 9 doctests failed', 'src/sage/rings/integer.pyx # 9 doctests failed', 'src/sage/symbolic/expression.pyx # 9 doctests failed', 'src/sage/crypto/lwe.py # 10 doctests failed', 'src/sage/misc/test_class_pickling.py # 10 doctests failed', 'src/sage/numerical/sdp.pyx # 10 doctests failed', 'src/sage/matroids/graphic_matroid.py # 11 doctests failed', 'src/sage/schemes/product_projective/point.py # 11 doctests failed', 'src/sage/symbolic/constants.py # 12 doctests failed', 'src/sage/categories/finite_posets.py # 15 doctests failed', 'src/sage/graphs/generic_graph.py # 18 doctests failed', 'src/sage/matroids/matroid.pyx # 18 doctests failed', 'src/sage/combinat/finite_state_machine.py # 19 doctests failed', 'src/sage/misc/classcall_metaclass.pyx # 20 doctests failed', 'src/sage/misc/explain_pickle.py # 70 doctests failed']
comment:222 Changed 3 years ago by
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comment:225 Changed 3 years ago by
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comment:226 Changed 3 years ago by
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comment:227 Changed 3 years ago by
Is there an easy place where we can find a full log of all Python 3 test failures?
comment:228 Changed 3 years ago by
comment:229 Changed 3 years ago by
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comment:230 Changed 3 years ago by
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in 8.7.b6:
less than 1 : 55 less than 2 : 78 less than 4 : 106 less than 8 : 124 less than 16 : 134
and the worst 15 are:
['src/sage/libs/eclib/interface.py # 8 doctests failed', 'src/sage/libs/ntl/ntl_ZZ_pX.pyx # 8 doctests failed', 'src/sage/libs/ppl.pyx # 9 doctests failed', 'src/sage/misc/nested_class.pyx # 9 doctests failed', 'src/sage/numerical/backends/cvxopt_backend.pyx # 9 doctests failed', 'src/sage/rings/integer.pyx # 9 doctests failed', 'src/sage/symbolic/expression.pyx # 9 doctests failed', 'src/sage/crypto/lwe.py # 10 doctests failed', 'src/sage/misc/test_class_pickling.py # 10 doctests failed', 'src/sage/numerical/sdp.pyx # 10 doctests failed', 'src/sage/schemes/product_projective/point.py # 11 doctests failed', 'src/sage/symbolic/constants.py # 12 doctests failed', 'src/sage/combinat/finite_state_machine.py # 19 doctests failed', 'src/sage/misc/classcall_metaclass.pyx # 20 doctests failed', 'src/sage/matroids/matroid.pyx # 22 doctests failed']
comment:231 Changed 3 years ago by
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comment:238 Changed 3 years ago by
When the next beta comes out, I think it will merge all of the algebra branches, and then we can move that out of the "in progress" list.
comment:239 Changed 3 years ago by
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on 8.7.b7:
less than 1 : 44 less than 2 : 64 less than 4 : 93 less than 8 : 111 less than 16 : 118
and the 15 worse are
['src/sage/libs/ntl/ntl_ZZ_pX.pyx # 8 doctests failed', 'src/sage/numerical/backends/cvxopt_backend.pyx # 8 doctests failed', 'src/sage/numerical/sdp.pyx # 8 doctests failed', 'src/sage/symbolic/expression.pyx # 8 doctests failed', 'src/sage/libs/ppl.pyx # 9 doctests failed', 'src/sage/misc/nested_class.pyx # 9 doctests failed', 'src/sage/rings/integer.pyx # 9 doctests failed', 'src/sage/crypto/lwe.py # 10 doctests failed', 'src/sage/schemes/product_projective/point.py # 11 doctests failed', 'src/sage/symbolic/constants.py # 12 doctests failed', 'src/sage/combinat/cluster_algebra_quiver/quiver.py # 13 doctests failed', 'src/sage/combinat/cluster_algebra_quiver/cluster_seed.py # 18 doctests failed', 'src/sage/matroids/matroid.pyx # 18 doctests failed', 'src/sage/combinat/finite_state_machine.py # 19 doctests failed', 'src/sage/misc/classcall_metaclass.pyx # 20 doctests failed']
comment:240 Changed 3 years ago by
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comment:250 Changed 3 years ago by
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- Milestone changed from sage-8.7 to sage-8.8
in 8.7.rc0: worst 15 are
['src/sage/groups/perm_gps/permgroup.py # 7 doctests failed', 'src/sage/graphs/generic_graph.py # 8 doctests failed', 'src/sage/libs/ntl/ntl_ZZ_pX.pyx # 8 doctests failed', 'src/sage/numerical/backends/cvxopt_backend.pyx # 8 doctests failed', 'src/sage/numerical/sdp.pyx # 8 doctests failed', 'src/sage/libs/ppl.pyx # 9 doctests failed', 'src/sage/misc/nested_class.pyx # 9 doctests failed', 'src/sage/rings/integer.pyx # 9 doctests failed', 'src/sage/symbolic/expression.pyx # 10 doctests failed', 'src/sage/symbolic/constants.py # 12 doctests failed', 'src/sage/combinat/cluster_algebra_quiver/quiver.py # 14 doctests failed', 'src/sage/combinat/cluster_algebra_quiver/cluster_seed.py # 18 doctests failed', 'src/sage/matroids/matroid.pyx # 18 doctests failed', 'src/sage/combinat/finite_state_machine.py # 19 doctests failed', 'src/sage/misc/classcall_metaclass.pyx # 20 doctests failed']
and there remains
less than 1 : 35 less than 2 : 56 less than 4 : 83 less than 8 : 95 less than 16 : 101 less than 64 : 105 less than 128 : 105 less than 256 : 105
comment:251 Changed 3 years ago by
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comment:253 Changed 3 years ago by
Is there a followup ticket to modify src/ext/doctest/python3-known-passing.txt
? Should that happen for every beta, or just every actual release? Anyway, we should add algebras
, data_structures
, homology
, modular
, modules
, schemes/curves
, schemes/product_projective
. What am I missing?
comment:254 Changed 3 years ago by
yes, this should be done from time to time. If you want to do that, please do! Now would be a good time. Here is my most recent list of good modules:
good = ["algebras", "algebras/steenrod", "arith", "coding", "calculus", "combinat/designs", "combinat/posets", "combinat/species", "combinat/rigged_configurations", "combinat/sf", "combinat/words", "databases", "data_structures", "docs", "features", "finance", "games", "game_theory", "groups/lie_gps", "groups/matrix_gps", "homology", "interacts", "knots", "libs/gsl", "lfunctions", "logic", "manifolds", "media", "modular/modsym", "modular", "modules", "monoids", "parallel", "plot", "probability", "quadratic_forms", "quivers", "rings/asymptotic", "rings/function_field", "rings/number_field", "sandpiles", "sat", "schemes/toric", "schemes/curves", "schemes/product_projective", "server", "stats", "structure", "tensor", "typeset", 'sage_setup']
comment:255 Changed 3 years ago by
See #27519. I'll post a branch there once I've finished testing.
comment:256 Changed 3 years ago by
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comment:259 Changed 3 years ago by
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In 8.8.b0:
less than 1 : 33 less than 2 : 54 less than 4 : 80 less than 8 : 92 less than 16 : 99 less than 64 : 102
and the worst 15 are
['src/sage/combinat/root_system/weyl_group.py # 7 doctests failed', 'src/sage/groups/perm_gps/permgroup.py # 7 doctests failed', 'src/sage/libs/ntl/ntl_ZZ_pX.pyx # 8 doctests failed', 'src/sage/numerical/backends/cvxopt_backend.pyx # 8 doctests failed', 'src/sage/numerical/sdp.pyx # 8 doctests failed', 'src/sage/misc/nested_class.pyx # 9 doctests failed', 'src/sage/rings/integer.pyx # 9 doctests failed', 'src/sage/symbolic/expression.pyx # 9 doctests failed', 'src/sage/graphs/generic_graph.py # 10 doctests failed', 'src/sage/symbolic/constants.py # 12 doctests failed', 'src/sage/combinat/cluster_algebra_quiver/cluster_seed.py # 13 doctests failed', 'src/sage/combinat/cluster_algebra_quiver/quiver.py # 13 doctests failed', 'src/sage/matroids/matroid.pyx # 18 doctests failed', 'src/sage/combinat/finite_state_machine.py # 19 doctests failed', 'src/sage/misc/classcall_metaclass.pyx # 20 doctests failed']
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Little regression after passing to python 3.7.3:
less than 1 : 36 less than 2 : 56 less than 4 : 84 less than 8 : 94 less than 16 : 102 less than 64 : 105
In the 15 worst files, 178 broken doctests:
['src/sage/groups/perm_gps/permgroup.py # 7 doctests failed', 'src/sage/graphs/generic_graph.py # 8 doctests failed', 'src/sage/libs/ntl/ntl_ZZ_pX.pyx # 8 doctests failed', 'src/sage/numerical/backends/cvxopt_backend.pyx # 8 doctests failed', 'src/sage/doctest/sources.py # 9 doctests failed', 'src/sage/misc/nested_class.pyx # 9 doctests failed', 'src/sage/numerical/sdp.pyx # 9 doctests failed', 'src/sage/rings/integer.pyx # 9 doctests failed', 'src/sage/symbolic/expression.pyx # 9 doctests failed', 'src/sage/symbolic/constants.py # 12 doctests failed', 'src/sage/combinat/cluster_algebra_quiver/cluster_seed.py # 13 doctests failed', 'src/sage/combinat/cluster_algebra_quiver/quiver.py # 14 doctests failed', 'src/sage/misc/classcall_metaclass.pyx # 20 doctests failed', 'src/sage/matroids/matroid.pyx # 21 doctests failed', 'src/sage/combinat/finite_state_machine.py # 22 doctests failed']
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Some progress in 8.8.b2:
less than 1 : 34 less than 2 : 54 less than 4 : 77 less than 8 : 86 less than 16 : 91 less than 64 : 94
In the 15 worst files, 163 broken doctests:
['src/sage/tests/books/computational-mathematics-with-sagemath/graphtheory_doctest.py # 5 doctests failed', 'src/sage/ext/fast_callable.pyx # 6 doctests failed', 'src/sage/groups/perm_gps/permgroup.py # 6 doctests failed', 'src/sage/rings/polynomial/multi_polynomial.pyx # 6 doctests failed', 'src/sage/combinat/root_system/weyl_group.py # 7 doctests failed', 'src/sage/graphs/generic_graph.py # 8 doctests failed', 'src/sage/libs/ntl/ntl_ZZ_pX.pyx # 8 doctests failed', 'src/sage/misc/nested_class.pyx # 9 doctests failed', 'src/sage/rings/integer.pyx # 9 doctests failed', 'src/sage/symbolic/expression.pyx # 12 doctests failed', 'src/sage/combinat/cluster_algebra_quiver/cluster_seed.py # 13 doctests failed', 'src/sage/combinat/cluster_algebra_quiver/quiver.py # 13 doctests failed', 'src/sage/matroids/matroid.pyx # 19 doctests failed', 'src/sage/misc/classcall_metaclass.pyx # 20 doctests failed', 'src/sage/combinat/finite_state_machine.py # 22 doctests failed']
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on 8.8.b3:
less than 1 : 32 less than 2 : 48 less than 4 : 67 less than 8 : 74 less than 16 : 80 less than 64 : 82
In the 15 worst files, 153 broken doctests:
['src/sage/rings/polynomial/binary_form_reduce.py # 5 doctests failed', 'src/sage/ext/fast_callable.pyx # 6 doctests failed', 'src/sage/groups/perm_gps/permgroup.py # 6 doctests failed', 'src/sage/rings/polynomial/multi_polynomial.pyx # 6 doctests failed', 'src/sage/combinat/root_system/weyl_group.py # 7 doctests failed', 'src/sage/graphs/generic_graph.py # 8 doctests failed', 'src/sage/libs/ntl/ntl_ZZ_pX.pyx # 8 doctests failed', 'src/sage/misc/nested_class.pyx # 9 doctests failed', 'src/sage/rings/integer.pyx # 9 doctests failed', 'src/sage/symbolic/expression.pyx # 10 doctests failed', 'src/sage/combinat/finite_state_machine.py # 11 doctests failed', 'src/sage/combinat/cluster_algebra_quiver/cluster_seed.py # 13 doctests failed', 'src/sage/combinat/cluster_algebra_quiver/quiver.py # 14 doctests failed', 'src/sage/misc/classcall_metaclass.pyx # 20 doctests failed', 'src/sage/matroids/matroid.pyx # 21 doctests failed']
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In the 15 worst files, 125 broken doctests:
['src/sage/combinat/set_partition.py # 5 doctests failed', 'src/sage/dynamics/arithmetic_dynamics/projective_ds.py # 5 doctests failed', 'src/sage/rings/polynomial/binary_form_reduce.py # 5 doctests failed', 'src/sage/ext/fast_callable.pyx # 6 doctests failed', 'src/sage/groups/perm_gps/permgroup.py # 6 doctests failed', 'src/sage/rings/polynomial/multi_polynomial.pyx # 6 doctests failed', 'src/sage/combinat/cluster_algebra_quiver/cluster_seed.py # 7 doctests failed', 'src/sage/combinat/root_system/weyl_group.py # 7 doctests failed', 'src/sage/graphs/generic_graph.py # 8 doctests failed', 'src/sage/libs/ntl/ntl_ZZ_pX.pyx # 8 doctests failed', 'src/sage/misc/nested_class.pyx # 9 doctests failed', 'src/sage/rings/integer.pyx # 9 doctests failed', 'src/sage/rings/qqbar.py # 9 doctests failed', 'src/sage/symbolic/expression.pyx # 12 doctests failed', 'src/sage/matroids/matroid.pyx # 23 doctests failed']
One can note a large regression in qqbar, and that matroids still get worse too.
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Regarding matroids
: there is some piece of underlying data which is intrinsically unordered, and it is causing all sorts of failures. I don't know if it's best to mark them all # py3 random
or to sort the data so this doesn't happen. Is there an active Sage developer who knows enough about matroids to help make this decision?
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With 8.8.b5:
less than 1 : 22 less than 2 : 30 less than 4 : 48 less than 8 : 52 less than 16 : 55 less than 64 : 56
In the 15 worst files, 102 broken doctests:
['src/sage/combinat/root_system/integrable_representations.py # 4 doctests failed', 'src/sage/combinat/set_partition.py # 4 doctests failed', 'src/sage/doctest/test.py # 4 doctests failed', 'src/sage/matroids/graphic_matroid.py # 4 doctests failed', 'src/sage/misc/functional.py # 4 doctests failed', 'src/sage/repl/attach.py # 4 doctests failed', 'src/sage/rings/polynomial/toy_buchberger.py # 4 doctests failed', 'src/sage/groups/perm_gps/permgroup.py # 6 doctests failed', 'src/sage/combinat/cluster_algebra_quiver/cluster_seed.py # 7 doctests failed', 'src/sage/combinat/root_system/weyl_group.py # 7 doctests failed', 'src/sage/graphs/generic_graph.py # 8 doctests failed', 'src/sage/misc/nested_class.pyx # 9 doctests failed', 'src/sage/rings/integer.pyx # 9 doctests failed', 'src/sage/symbolic/expression.pyx # 10 doctests failed', 'src/sage/matroids/matroid.pyx # 18 doctests failed']
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#27854 deals with the rest of cluster_algebra_seed
apart from one doctest that fails intermittently.
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In sage 8.8.b6, some progress:
less than 1 : 20 less than 2 : 27 less than 4 : 42 less than 8 : 46 less than 16 : 48 less than 64 : 49
In the 15 worst files, 96 broken doctests:
['src/sage/geometry/polyhedron/ppl_lattice_polytope.py # 3 doctests failed', 'src/sage/misc/sageinspect.py # 3 doctests failed', 'src/sage/rings/polynomial/multi_polynomial_ideal.py # 3 doctests failed', 'src/sage/rings/valuation/inductive_valuation.py # 3 doctests failed', 'src/sage/matroids/graphic_matroid.py # 4 doctests failed', 'src/sage/misc/functional.py # 4 doctests failed', 'src/sage/repl/attach.py # 4 doctests failed', 'src/sage/rings/polynomial/toy_buchberger.py # 4 doctests failed', 'src/sage/combinat/cluster_algebra_quiver/cluster_seed.py # 7 doctests failed', 'src/sage/combinat/root_system/weyl_group.py # 7 doctests failed', 'src/sage/symbolic/expression.pyx # 7 doctests failed', 'src/sage/graphs/generic_graph.py # 8 doctests failed', 'src/sage/misc/nested_class.pyx # 9 doctests failed', 'src/sage/rings/integer.pyx # 9 doctests failed', 'src/sage/matroids/matroid.pyx # 21 doctests failed']
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comment:323 follow-up: ↓ 325 Changed 3 years ago by
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moved matroids to the "work in progress section"
comment:324 follow-up: ↓ 327 Changed 3 years ago by
If no one is working on it yet, I will look into multi_polynomial_ideal
and toy_buchberger
.
comment:325 in reply to: ↑ 323 Changed 3 years ago by
Replying to chapoton:
moved matroids to the "work in progress section"
Oops. Thank you for fixing that.
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comment:327 in reply to: ↑ 324 Changed 3 years ago by
Replying to gh-mwageringel:
If no one is working on it yet, I will look into
multi_polynomial_ideal
andtoy_buchberger
.
Sure, but make sure to check #27791: closed but not yet merged into a beta release.
Edit: oh, sorry, that deals with multi_polynomial, and you were talking about multi_polynomial_ideal. I don't see any relevant tickets, so please go ahead.
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in 8.8.b7:
less than 1 : 18 less than 2 : 25 less than 4 : 38 less than 8 : 41 less than 16 : 43 less than 64 : 44
In the 15 worst files, 92 broken doctests:
['src/sage/combinat/root_system/weyl_characters.py # 3 doctests failed', 'src/sage/combinat/set_partition_ordered.py # 3 doctests failed', 'src/sage/doctest/test.py # 3 doctests failed', 'src/sage/misc/sageinspect.py # 3 doctests failed', 'src/sage/rings/polynomial/multi_polynomial_ideal.py # 3 doctests failed', 'src/sage/rings/polynomial/toy_buchberger.py # 3 doctests failed', 'src/sage/matroids/graphic_matroid.py # 4 doctests failed', 'src/sage/misc/functional.py # 4 doctests failed', 'src/sage/repl/attach.py # 4 doctests failed', 'src/sage/combinat/root_system/weyl_group.py # 7 doctests failed', 'src/sage/graphs/generic_graph.py # 8 doctests failed', 'src/sage/symbolic/expression.pyx # 8 doctests failed', 'src/sage/misc/nested_class.pyx # 9 doctests failed', 'src/sage/rings/integer.pyx # 9 doctests failed', 'src/sage/matroids/matroid.pyx # 21 doctests failed']
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in 8.8.rc0:
less than 1 : 12 less than 2 : 16 less than 4 : 28 less than 8 : 30 less than 16 : 32
In the 15 worst files, 69 broken doctests:
['src/sage/combinat/crystals/kirillov_reshetikhin.py # 3 doctests failed', 'src/sage/combinat/perfect_matching.py # 3 doctests failed', 'src/sage/combinat/root_system/root_lattice_realizations.py # 3 doctests failed', 'src/sage/combinat/root_system/weyl_characters.py # 3 doctests failed', 'src/sage/doctest/test.py # 3 doctests failed', 'src/sage/misc/sageinspect.py # 3 doctests failed', 'src/sage/rings/polynomial/multi_polynomial_ideal.py # 3 doctests failed', 'src/sage/symbolic/expression.pyx # 3 doctests failed', 'src/sage/misc/functional.py # 4 doctests failed', 'src/sage/repl/attach.py # 4 doctests failed', 'src/sage/rings/polynomial/toy_buchberger.py # 4 doctests failed', 'src/sage/combinat/root_system/weyl_group.py # 7 doctests failed', 'src/sage/graphs/generic_graph.py # 8 doctests failed', 'src/sage/misc/nested_class.pyx # 9 doctests failed', 'src/sage/rings/integer.pyx # 9 doctests failed']
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- Milestone sage-8.8 deleted
As the Sage-8.8 release milestone is pending, we should delete the sage-8.8 milestone for tickets that are not actively being worked on or that still require significant work to move forward. If you feel that this ticket should be included in the next Sage release at the soonest please set its milestone to the next release milestone (sage-8.9).
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In 8.9.beta0:
less than 1 : 9 less than 2 : 12 less than 4 : 17 less than 8 : 20 less than 16 : 22
In the 15 worst files, 64 broken doctests:
['src/sage/tests/books/computational-mathematics-with-sagemath/graphtheory_doctest.py # 1 doctest failed', 'src/sage/tests/books/computational-mathematics-with-sagemath/sol/graphtheory_doctest.py # 1 doctest failed', 'src/sage/combinat/finite_state_machine.py # 2 doctests failed', 'src/sage/doctest/test.py # 2 doctests failed', 'src/sage/numerical/backends/generic_backend.pyx # 2 doctests failed', 'src/sage/combinat/perfect_matching.py # 3 doctests failed', 'src/sage/combinat/root_system/root_lattice_realizations.py # 3 doctests failed', 'src/sage/combinat/root_system/weyl_characters.py # 3 doctests failed', 'src/sage/misc/functional.py # 4 doctests failed', 'src/sage/repl/attach.py # 4 doctests failed', 'src/sage/symbolic/expression.pyx # 6 doctests failed', 'src/sage/combinat/root_system/weyl_group.py # 7 doctests failed', 'src/sage/graphs/generic_graph.py # 8 doctests failed', 'src/sage/misc/nested_class.pyx # 9 doctests failed', 'src/sage/rings/integer.pyx # 9 doctests failed']
There is an unexpected failure in 8.9.beta0 in the schemes folder :
sage -t --long src/sage/schemes/hyperelliptic_curves/hyperelliptic_finite_field.py # 1 doctest failed on line 780
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For 8.9.b2: In the 15 worst files, 55 broken doctests:
['src/sage/libs/singular/function.pyx # 1 doctest failed', 'src/sage/schemes/hyperelliptic_curves/hyperelliptic_finite_field.py # 1 doctest failed', 'src/sage/symbolic/expression.pyx # 1 doctest failed', 'src/sage/tests/books/computational-mathematics-with-sagemath/graphtheory_doctest.py # 1 doctest failed', 'src/sage/tests/books/computational-mathematics-with-sagemath/sol/graphtheory_doctest.py # 1 doctest failed', 'src/sage/doctest/test.py # 2 doctests failed', 'src/sage/numerical/backends/generic_backend.pyx # 2 doctests failed', 'src/sage/combinat/perfect_matching.py # 3 doctests failed', 'src/sage/combinat/root_system/root_lattice_realizations.py # 3 doctests failed', 'src/sage/combinat/root_system/weyl_characters.py # 3 doctests failed', 'src/sage/repl/attach.py # 4 doctests failed', 'src/sage/combinat/root_system/weyl_group.py # 7 doctests failed', 'src/sage/graphs/generic_graph.py # 8 doctests failed', 'src/sage/misc/nested_class.pyx # 9 doctests failed', 'src/sage/rings/integer.pyx # 9 doctests failed']
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apparently, new regression here:
sage -t --long src/sage/geometry/polyhedron/combinatorial_polyhedron/base.pyx # 1 doctest failed
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Can anyone provide any more information on the "fragile" doctests? In repeated runs, I get no failures (on OS X) with
./sage -tp --long src/sage/repl src/sage/numerical/ src/sage/libs
For the doctest failures in french_book
, it is not clear to me what sort of changes are allowed, since the book is now in press. Should the failing tests just be marked as # py2
until the authors present a better solution?
comment:389 Changed 3 years ago by
The failures can be seen in the logs of the Python 3 patchbot: https://patchbot.sagemath.org/ticket/0/. Without being able to reproduce these, they still seem pretty difficult to solve though.
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status on 8.9.beta4: remains 12 files with a total of 33 failing doctests:
'src/sage/combinat/root_system/non_symmetric_macdonald_polynomials.py # 1 doctest failed', 'src/sage/libs/singular/function.pyx # 1 doctest failed', 'src/sage/schemes/hyperelliptic_curves/hyperelliptic_finite_field.py # 1 doctest failed', 'src/sage/symbolic/expression.pyx # 1 doctest failed', 'src/sage/tests/books/computational-mathematics-with-sagemath/graphtheory_doctest.py # 1 doctest failed', 'src/sage/tests/books/computational-mathematics-with-sagemath/sol/graphtheory_doctest.py # 1 doctest failed', 'src/sage/doctest/test.py # 2 doctests failed', 'src/sage/numerical/backends/generic_backend.pyx # 2 doctests failed', 'src/sage/combinat/root_system/weyl_characters.py # 3 doctests failed', 'src/sage/repl/attach.py # 4 doctests failed', 'src/sage/combinat/root_system/weyl_group.py # 7 doctests failed', 'src/sage/misc/nested_class.pyx # 9 doctests failed'
comment:394 Changed 3 years ago by
Yes, the 8 last failing doctests in generic_graph.py
have been fixed with #27232. So, all doctests in the standard graphs module are now fixed !!!
We still have some failing doctests in optional packages like plantri
#28108. I have now yet checked all other optional packages. Do we have a meta-ticket to record them ?
comment:395 Changed 3 years ago by
Is this a new one? All tests in schemes
are supposed to pass.
'src/sage/schemes/hyperelliptic_curves/hyperelliptic_finite_field.py # 1 doctest failed'
comment:396 Changed 3 years ago by
I think I have seen that already in previous betas, maybe since 8.9.beta3 or before.
EDIT: it was already there in 8.9.b0 (see above)
comment:397 Changed 3 years ago by
Is there a ticket for it? What's the error? (I don't see it on my OS X machines.)
comment:398 Changed 3 years ago by
I don't have it either on ubuntu 16.04.
comment:399 follow-up: ↓ 400 Changed 3 years ago by
There is no ticket for this error in schemes. The exact error can be seen in the patchbot log:
https://patchbot.sagemath.org/log/0/Ubuntu/16.04/x86_64/4.4.0-148-generic/atlas/2019-07-29%2008:49:23?short
This patchtbot is running on an ubuntu 16.04, using gcc 8.3.0.
Maybe we should start a new ticket for the final polishing ? This one is very long already.
comment:400 in reply to: ↑ 399 Changed 3 years ago by
Replying to chapoton:
Maybe we should start a new ticket for the final polishing ? This one is very long already.
Good idea. It's great seeing the progress!
comment:401 Changed 3 years ago by
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I have created #28298 for the few remaining final steps.
comment:402 follow-ups: ↓ 403 ↓ 404 Changed 3 years ago by
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LARGE SCALE REGRESSION in 8.9.b5, with 241 failing doctests !!!!
EDIT: This could have been caused by a wrong version of gcc being used. Will retry.
comment:403 in reply to: ↑ 402 Changed 3 years ago by
comment:404 in reply to: ↑ 402 Changed 3 years ago by
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Replying to chapoton:
LARGE SCALE REGRESSION in 8.9.b5, with 241 failing doctests !!!!
EDIT: This could have been caused by a wrong version of gcc being used. Will retry.
This was a false alert, due to a wrong gcc. There are 18 failing doctests.
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- Description modified (diff)
comment:408 Changed 3 years ago by
- Description modified (diff)
comment:409 Changed 2 years ago by
- Milestone set to sage-duplicate/invalid/wontfix
- Resolution set to worksforme
- Status changed from new to closed
Hadn't even seen this ticket; very nice.