Opened 2 years ago

Last modified 3 weeks ago

#25536 new task

meta-ticket: failing internet/optional doctests

Reported by: slabbe Owned by:
Priority: major Milestone: sage-pending
Component: doctest coverage Keywords: meta-ticket, internet, optional doctests, thursdaysbdx
Cc: slelievre, vklein Merged in:
Authors: Reviewers:
Report Upstream: N/A Work issues:
Branch: Commit:
Dependencies: Stopgaps:

Description (last modified by slabbe)

This meta-ticket lists tickets opened for failing doctests involving internet, optional and/or external packages as discovered by running:

sage -tp --optional=sage,optional,external --all

Many issues are related to internet (running them is activated by the tag external in the above command) which can be specifically tested with the following command:

sage -tp --optional=sage,internet --all

Tickets

Still open tickets:

  • #30630 internet findstat error handling
  • #30633 sympow gives "RuntimeError: failed to compute analytic rank" doctest failures
  • #30635 doctests failures in sage/graphs when using COIN solver

Fixed in 9.3:

  • #30636 failing doctest with optional tag octave
  • #30637 doctest failing in designs/incidence_structures.py

Fixed in 9.2:

  • #30632 few easy internet doctests failures to fix
  • #30634 failing internet doctests using mathematica free
  • #30638 internet doctest failing in arith/misc.py
  • #28864 internet doctests failing in findstat.py
  • #30131 2 internet doctests failing in bibd.py
  • #30138 1 internet doctest failing in oeis.py (cross_references)
  • #30020 3 internet oeis doctests failing in combinat
  • #30019 1 internet doctest failing in combinat/quickref.py
  • #29787 1 optional internet oeis doctest failing (busy beaver ordering)
  • #25465 2 doctests failed in smallgraphs.py (a duplicate was #28865)

Fixed in 9.1:

  • #29579 1 internet test failing in OEIS
  • #29578 1 internet test failing in symbolic/integration/external.py
  • #28866 doctest killed due to abort in geometry/polyhedron/base.py
  • #28868 7 imagemagick failing doctests in plot/animate.py
  • #29237 1 optional internet oeis doctest failing in combinat/tutorial.py
  • #29300 Latte test failure
  • #28867 1 imagemagick failing doctest in misc/latex.py
  • #29047 1 internet doctest failing in repl/load.py
  • #29048 1 internet doctest failing in src/sage/databases/oeis.py

Fixed in 9.0:

  • #28708 5 cplex doctests failed in cplex_backend.pyx
  • #28700 missing latte_int optional tag in three doctests (a duplicate ticket was #28697)
  • #27838 5 (now 8) internet doctests failing in findstat.py
  • #28689 fix doctests with cbc
  • #28756 py3: fix doctests with gurobi
  • #28759 py3: dot2tex + graphviz doctests failures
  • #28760 py3: imagemagick,internet,latex str vs bytes doctests failures
  • #28761 py3: further fixes for misc relative to internet doctests failures
  • #28763 7 glucose optional doctests failed in sat/solvers/dimacs.py
  • #28764 2 internet doctest failed in hadamard_matrix.py
  • #28762 2 doctests failed in cmdline.py related to rst2ipynb
  • #28808 failing internet in repl/load.py
  • #28863 1 doctest failed in thematic_tutorials/linear_programming.rst because of CPLEX

Fixed in 8.9:

  • #28455 1 doctest failing in src/sage/databases/oeis.py with tag internet
  • #28127 1 internet doctest failing in oeis.py (Avogadro's)
  • #28206 py3: fix str vs bytes issues with gurobi

Fixed in 8.8:

  • #27872 2 failing trivial internet doctests related to oeis
  • #27821 failing internet doctests in sage/combinat/designs (again)
  • #27783 6 doctests internet failed in databases/oeis.py
  • #27782 1 pynormaliz doctest failing in geometry/polyhedron/backend_normaliz.py
  • #27781 2 internet doctests failing in misc/package.py
  • #26592 3+2 failing internet doctests in sage/combinat/designs

Fixed in 8.7:

  • #25614 2 failing internet doctests in sage/misc/persist.pyx
  • #27361 oeis.py related to internet
  • #27249 fix doctest in graph_latex related to dot2tex and graphviz
  • #25535 1 failing internet doctest in sage/repl/load.py
  • #27172 1 optional doctest failing in cmdline.py related to pandoc
  • #26997 5 internet doctests failing in findstat.py
  • #26999 1 optional gurobi doctest failing

Fixed in 8.6:

  • #26921 1 internet doctest failing in combinat/tutorial.py
  • #25501 3+1 internet failing doctests in sage/symbolic/integration/external.py and internal.py, because of mma_free_integrator is broken, thus also fixing #14764
  • #26920 -> #26994 (2 failing doctests in sql_db.py because of optional pkg bliss)

Fixed in 8.5:

  • #25473 20 failing internet doctests in finance/stock.py
  • #26348 3 other internet doctests failures in findstat.py
  • #26502 3+2 failing internet doctests in sage/combinat/designs
  • #26728: Remove ellipsis in one findstat doctest

Fixed in 8.4:

  • #25773 (1 more internet in findstat)
  • #26125 (3 more internet in oeis)
  • #25378 (I/O on closed file error when running doctest with external packages)
  • #26347 (animate.py and paths.py related to external ffmpeg and imagemagick)

Fixed in 8.3:

  • #25471 (oeis)
  • #25472 (findstat)
  • #25474 (6 files)
  • #25534 (coding/databases.py)
  • #25416 (failures in animate.py related to external package imagemagick)
  • #25399 (failures related to optional package bliss)

Closed as invalid because not always reproducible:

  • #25615 1 internet doctest failing in sage/combinat/designs/ext_rep.py

Reports

Many of the above tickets originated in reports of failing doctests on the sage-release mailing list, after the release announcement for various development versions of Sage. See for instance:

and more can be found by searching for "internet" on sage-release.

Change History (82)

comment:1 Changed 2 years ago by slabbe

I fixed #25474. I am clueless for the others.

comment:2 Changed 2 years ago by slabbe

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added persist.pyx

comment:3 Changed 2 years ago by slabbe

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comment:4 Changed 2 years ago by slabbe

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  • Summary changed from meta-ticket: failing internet doctests in 8.3.beta3 to meta-ticket: failing internet doctests in 8.3.betaX

comment:5 Changed 2 years ago by slabbe

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comment:6 Changed 2 years ago by slabbe

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comment:7 Changed 2 years ago by slabbe

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comment:8 Changed 2 years ago by slabbe

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  • Summary changed from meta-ticket: failing internet doctests in 8.3.betaX to meta-ticket: failing internet/optional doctests in 8.3.betaX and 8.4.betaX

comment:9 Changed 2 years ago by slabbe

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comment:10 Changed 2 years ago by slabbe

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comment:14 Changed 2 years ago by slabbe

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comment:15 Changed 2 years ago by slelievre

  • Cc slelievre added

See also

  • #26728: Remove ellipsis in one findstat doctest

comment:16 Changed 2 years ago by slabbe

  • Description modified (diff)
  • Summary changed from meta-ticket: failing internet/optional doctests in 8.3.betaX and 8.4.betaX to meta-ticket: failing internet/optional doctests in 8.3.betaX, 8.4.betaX, 8.5.betaX

comment:17 Changed 2 years ago by slabbe

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comment:18 Changed 23 months ago by slabbe

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comment:19 Changed 23 months ago by slabbe

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comment:20 Changed 23 months ago by jdemeyer

  • Summary changed from meta-ticket: failing internet/optional doctests in 8.3.betaX, 8.4.betaX, 8.5.betaX to meta-ticket: failing internet/optional doctests

comment:21 Changed 23 months ago by slabbe

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comment:22 Changed 23 months ago by slabbe

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comment:23 Changed 22 months ago by slabbe

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comment:24 Changed 22 months ago by slelievre

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  • Keywords meta-ticket internet optional doctests added
  • Milestone changed from sage-8.3 to sage-pending

comment:25 Changed 22 months ago by slabbe

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  • Keywords thursdaysbdx added

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adding #28697

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comment:50 Changed 12 months ago by dcoudert

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tickets merged in 9.0.beta8

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