Opened 22 months ago
Closed 22 months ago
#24378 closed defect (fixed)
complex_root_of uses inexact index
Reported by:  jdemeyer  Owned by:  

Priority:  blocker  Milestone:  sage8.2 
Component:  symbolics  Keywords:  
Cc:  rws, charpent  Merged in:  
Authors:  Ralf Stephan  Reviewers:  Jeroen Demeyer 
Report Upstream:  N/A  Work issues:  
Branch:  277a403 (Commits)  Commit:  277a403ef00692247f9853d89322f9a464abd471 
Dependencies:  Stopgaps: 
Description (last modified by )
When numerically evaluating complex_root_of(a, k)
, the index k
is passed as floatingpoint number:
sage: complex_root_of(x^81, 7).n(2)  IndexError Traceback (most recent call last) <ipythoninput14eba84b7c14c> in <module>() > 1 complex_root_of(x**Integer(8)Integer(1), Integer(7)).n(Integer(2)) /home/patchbot/sagepatchbot/src/sage/structure/element.pyx in sage.structure.element.Element.n (build/cythonized/sage/structure/element.c:8131)() 863 0.666666666666667 864 """ > 865 return self.numerical_approx(prec, digits, algorithm) 866 867 N = deprecated_function_alias(13055, n) /home/patchbot/sagepatchbot/src/sage/symbolic/expression.pyx in sage.symbolic.expression.Expression.numerical_approx (build/cythonized/sage/symbolic/expression.cpp:36209)() 5818 kwds = {'parent': R, 'algorithm': algorithm} 5819 try: > 5820 x = x._convert(kwds) 5821 except TypeError: # numerical approximation for real number failed 5822 pass # try again with complex /home/patchbot/sagepatchbot/src/sage/symbolic/expression.pyx in sage.symbolic.expression.Expression._convert (build/cythonized/sage/symbolic/expression.cpp:10663)() 1257 sig_on() 1258 try: > 1259 res = self._gobj.evalf(0, kwds) 1260 finally: 1261 sig_off() /home/patchbot/sagepatchbot/local/lib/python2.7/sitepackages/sage/functions/other.pyc in _evalf_(self, poly, index, parent, algorithm) 2918 except AttributeError: 2919 prec = 53 > 2920 sobj = CRootOf(Poly(poly._sympy_()), int(index)) 2921 return sobj.n(ceil(prec*3/10))._sage_() 2922 /home/patchbot/sagepatchbot/local/lib/python2.7/sitepackages/sympy/polys/rootoftools.pyc in __new__(cls, f, x, index, radicals, expand) 130 if index < degree or index >= degree: 131 raise IndexError("root index out of [%d, %d] range, got %d" % > 132 (degree, degree  1, index)) 133 elif index < 0: 134 index += degree IndexError: root index out of [8, 7] range, got 8
When gmpy2
is installed, the index is even passed as complex number:
sage t long src/sage/functions/other.py ********************************************************************** File "src/sage/functions/other.py", line 2862, in sage.functions.other.Function_crootof Failed example: c.n() Exception raised: Traceback (most recent call last): File "/home/patchbot/sagepatchbot/local/lib/python2.7/sitepackages/sage/doctest/forker.py", line 517, in _run self.compile_and_execute(example, compiler, test.globs) File "/home/patchbot/sagepatchbot/local/lib/python2.7/sitepackages/sage/doctest/forker.py", line 920, in compile_and_execute exec(compiled, globs) File "<doctest sage.functions.other.Function_crootof[1]>", line 1, in <module> c.n() File "sage/structure/element.pyx", line 865, in sage.structure.element.Element.n (build/cythonized/sage/structure/element.c:8131) return self.numerical_approx(prec, digits, algorithm) File "sage/symbolic/expression.pyx", line 5824, in sage.symbolic.expression.Expression.numerical_approx (build/cythonized/sage/symbolic/expression.cpp:36286) x = x._convert(kwds) File "sage/symbolic/expression.pyx", line 1259, in sage.symbolic.expression.Expression._convert (build/cythonized/sage/symbolic/expression.cpp:10663) res = self._gobj.evalf(0, kwds) File "/home/patchbot/sagepatchbot/local/lib/python2.7/sitepackages/sage/functions/other.py", line 2920, in _evalf_ sobj = CRootOf(Poly(poly._sympy_()), int(index)) File "sage/rings/complex_number.pyx", line 1058, in sage.rings.complex_number.ComplexNumber.__int__ (build/cythonized/sage/rings/complex_number.c:10918) raise TypeError("can't convert complex to int; use int(abs(z))") TypeError: can't convert complex to int; use int(abs(z)) ********************************************************************** File "src/sage/functions/other.py", line 2864, in sage.functions.other.Function_crootof Failed example: c.n(100) Exception raised: Traceback (most recent call last): File "/home/patchbot/sagepatchbot/local/lib/python2.7/sitepackages/sage/doctest/forker.py", line 517, in _run self.compile_and_execute(example, compiler, test.globs) File "/home/patchbot/sagepatchbot/local/lib/python2.7/sitepackages/sage/doctest/forker.py", line 920, in compile_and_execute exec(compiled, globs) File "<doctest sage.functions.other.Function_crootof[2]>", line 1, in <module> c.n(Integer(100)) File "sage/structure/element.pyx", line 865, in sage.structure.element.Element.n (build/cythonized/sage/structure/element.c:8131) return self.numerical_approx(prec, digits, algorithm) File "sage/symbolic/expression.pyx", line 5824, in sage.symbolic.expression.Expression.numerical_approx (build/cythonized/sage/symbolic/expression.cpp:36286) x = x._convert(kwds) File "sage/symbolic/expression.pyx", line 1259, in sage.symbolic.expression.Expression._convert (build/cythonized/sage/symbolic/expression.cpp:10663) res = self._gobj.evalf(0, kwds) File "/home/patchbot/sagepatchbot/local/lib/python2.7/sitepackages/sage/functions/other.py", line 2920, in _evalf_ sobj = CRootOf(Poly(poly._sympy_()), int(index)) File "sage/rings/complex_number.pyx", line 1058, in sage.rings.complex_number.ComplexNumber.__int__ (build/cythonized/sage/rings/complex_number.c:10918) raise TypeError("can't convert complex to int; use int(abs(z))") TypeError: can't convert complex to int; use int(abs(z)) ********************************************************************** File "src/sage/functions/other.py", line 2866, in sage.functions.other.Function_crootof Failed example: (c^6 + c + 1).n(100) < 1e25 Exception raised: Traceback (most recent call last): File "/home/patchbot/sagepatchbot/local/lib/python2.7/sitepackages/sage/doctest/forker.py", line 517, in _run self.compile_and_execute(example, compiler, test.globs) File "/home/patchbot/sagepatchbot/local/lib/python2.7/sitepackages/sage/doctest/forker.py", line 920, in compile_and_execute exec(compiled, globs) File "<doctest sage.functions.other.Function_crootof[3]>", line 1, in <module> (c**Integer(6) + c + Integer(1)).n(Integer(100)) < RealNumber('1e25') File "sage/structure/element.pyx", line 865, in sage.structure.element.Element.n (build/cythonized/sage/structure/element.c:8131) return self.numerical_approx(prec, digits, algorithm) File "sage/symbolic/expression.pyx", line 5824, in sage.symbolic.expression.Expression.numerical_approx (build/cythonized/sage/symbolic/expression.cpp:36286) x = x._convert(kwds) File "sage/symbolic/expression.pyx", line 1259, in sage.symbolic.expression.Expression._convert (build/cythonized/sage/symbolic/expression.cpp:10663) res = self._gobj.evalf(0, kwds) File "/home/patchbot/sagepatchbot/local/lib/python2.7/sitepackages/sage/functions/other.py", line 2920, in _evalf_ sobj = CRootOf(Poly(poly._sympy_()), int(index)) File "sage/rings/complex_number.pyx", line 1058, in sage.rings.complex_number.ComplexNumber.__int__ (build/cythonized/sage/rings/complex_number.c:10918) raise TypeError("can't convert complex to int; use int(abs(z))") TypeError: can't convert complex to int; use int(abs(z)) ********************************************************************** File "src/sage/functions/other.py", line 2908, in sage.functions.other.Function_crootof._evalf_ Failed example: complex_root_of(x^22, 1).n() Exception raised: Traceback (most recent call last): File "/home/patchbot/sagepatchbot/local/lib/python2.7/sitepackages/sage/doctest/forker.py", line 517, in _run self.compile_and_execute(example, compiler, test.globs) File "/home/patchbot/sagepatchbot/local/lib/python2.7/sitepackages/sage/doctest/forker.py", line 920, in compile_and_execute exec(compiled, globs) File "<doctest sage.functions.other.Function_crootof._evalf_[0]>", line 1, in <module> complex_root_of(x**Integer(2)Integer(2), Integer(1)).n() File "sage/structure/element.pyx", line 865, in sage.structure.element.Element.n (build/cythonized/sage/structure/element.c:8131) return self.numerical_approx(prec, digits, algorithm) File "sage/symbolic/expression.pyx", line 5824, in sage.symbolic.expression.Expression.numerical_approx (build/cythonized/sage/symbolic/expression.cpp:36286) x = x._convert(kwds) File "sage/symbolic/expression.pyx", line 1259, in sage.symbolic.expression.Expression._convert (build/cythonized/sage/symbolic/expression.cpp:10663) res = self._gobj.evalf(0, kwds) File "/home/patchbot/sagepatchbot/local/lib/python2.7/sitepackages/sage/functions/other.py", line 2920, in _evalf_ sobj = CRootOf(Poly(poly._sympy_()), int(index)) File "sage/rings/complex_number.pyx", line 1058, in sage.rings.complex_number.ComplexNumber.__int__ (build/cythonized/sage/rings/complex_number.c:10918) raise TypeError("can't convert complex to int; use int(abs(z))") TypeError: can't convert complex to int; use int(abs(z)) ********************************************************************** 2 items had failures: 3 of 5 in sage.functions.other.Function_crootof 1 of 3 in sage.functions.other.Function_crootof._evalf_ [622 tests, 4 failures, 17.27 s] sage t long src/sage/interfaces/sympy.py ********************************************************************** File "src/sage/interfaces/sympy.py", line 617, in sage.interfaces.sympy._sympysage_crootof Failed example: (sols[0]+1)._sage_().n() Exception raised: Traceback (most recent call last): File "/home/patchbot/sagepatchbot/local/lib/python2.7/sitepackages/sage/doctest/forker.py", line 517, in _run self.compile_and_execute(example, compiler, test.globs) File "/home/patchbot/sagepatchbot/local/lib/python2.7/sitepackages/sage/doctest/forker.py", line 920, in compile_and_execute exec(compiled, globs) File "<doctest sage.interfaces.sympy._sympysage_crootof[6]>", line 1, in <module> (sols[Integer(0)]+Integer(1))._sage_().n() File "sage/structure/element.pyx", line 865, in sage.structure.element.Element.n (build/cythonized/sage/structure/element.c:8131) return self.numerical_approx(prec, digits, algorithm) File "sage/symbolic/expression.pyx", line 5824, in sage.symbolic.expression.Expression.numerical_approx (build/cythonized/sage/symbolic/expression.cpp:36286) x = x._convert(kwds) File "sage/symbolic/expression.pyx", line 1259, in sage.symbolic.expression.Expression._convert (build/cythonized/sage/symbolic/expression.cpp:10663) res = self._gobj.evalf(0, kwds) File "/home/patchbot/sagepatchbot/local/lib/python2.7/sitepackages/sage/functions/other.py", line 2920, in _evalf_ sobj = CRootOf(Poly(poly._sympy_()), int(index)) File "sage/rings/complex_number.pyx", line 1058, in sage.rings.complex_number.ComplexNumber.__int__ (build/cythonized/sage/rings/complex_number.c:10918) raise TypeError("can't convert complex to int; use int(abs(z))") TypeError: can't convert complex to int; use int(abs(z)) ********************************************************************** 1 item had failures: 1 of 8 in sage.interfaces.sympy._sympysage_crootof [218 tests, 1 failure, 3.27 s]
Change History (54)
comment:1 Changed 22 months ago by
 Cc charpent added
comment:2 Changed 22 months ago by
 Description modified (diff)
 Summary changed from Doctest failures related to sympy to Doctest failures related to sympy CRootOf
comment:3 Changed 22 months ago by
 Branch set to u/rws/doctest_failures_related_to_sympy_crootof
comment:4 followups: ↓ 6 ↓ 10 Changed 22 months ago by
 Commit set to a93662faed523eb117f4ce0197b3178855849fd2
 Status changed from new to needs_review
comment:5 Changed 22 months ago by
Do you have an idea why this depends on the system?
comment:6 in reply to: ↑ 4 Changed 22 months ago by
Replying to rws:
That exact arguments are made inexact is a bug in itself. But that they are made complex (EDIT: in some machines) is beyond me.
Do you know where this happens? It seems to me that it is Pynac doing this.
comment:7 Changed 22 months ago by
 Description modified (diff)
comment:8 Changed 22 months ago by
Some sympy behavior depends on the presence/absence of gmpy2. We had this trouble before the upgrade.
comment:9 Changed 22 months ago by
 Description modified (diff)
 Summary changed from Doctest failures related to sympy CRootOf to complex_root_of uses inexact index
comment:10 in reply to: ↑ 4 ; followup: ↓ 15 Changed 22 months ago by
Replying to rws:
That exact arguments are made inexact is a bug in itself.
Right, this ticket should just fix that.
comment:11 Changed 22 months ago by
 Status changed from needs_review to needs_work
comment:12 Changed 22 months ago by
 Description modified (diff)
comment:13 Changed 22 months ago by
 Description modified (diff)
comment:14 Changed 22 months ago by
 Description modified (diff)
comment:15 in reply to: ↑ 10 Changed 22 months ago by
Replying to jdemeyer:
Replying to rws:
That exact arguments are made inexact is a bug in itself.
Right, this ticket should just fix that.
Indeed numerical_approximation
of symbolic expression is lazily converting all arguments to the same parent. Which is very wrong when a function is defined on R x N
.
Perhaps it would be good to add in _evalf_
the check
if not isinstance(index, numbers.Integral): raise ValueError
Though I am curious about this sympy misbehavior.
comment:16 Changed 22 months ago by
Indeed there is a sympy bug that is now tracked at #24380.
comment:17 followup: ↓ 21 Changed 22 months ago by
numerical_approx
is very wrong when evaluating. It converts x^2  2
to x^2  2.0
and hence loosing precision for no good reason.
comment:18 Changed 22 months ago by
There was indeed a bug in sympy: #24380 needs review!
comment:19 Changed 22 months ago by
I suggest accepting my quick fix to resolve the blocker. Meanwhile I'm looking into Pynac.
comment:20 Changed 22 months ago by
If your only goal is to resolve the blocker doctest failures, then I think it is better to use # known bug
. The fact that the index is made floatingpoint is the real bug, whether it is real or complex is just a small variation.
comment:21 in reply to: ↑ 17 ; followup: ↓ 22 Changed 22 months ago by
Replying to vdelecroix:
numerical_approx
is very wrong when evaluating. It convertsx^2  2
tox^2  2.0
and hence loosing precision for no good reason.
I disagree in this case. The result is exactly what was asked for.
comment:22 in reply to: ↑ 21 ; followups: ↓ 23 ↓ 24 Changed 22 months ago by
Replying to rws:
Replying to vdelecroix:
numerical_approx
is very wrong when evaluating. It convertsx^2  2
tox^2  2.0
and hence loosing precision for no good reason.I disagree in this case. The result is exactly what was asked for.
The problem under discussion is that you have a number specified by an equation like x^2  2 = 0
. Now, you want an numerical approximation of it. I claim that there is not much reason to transform the equation into 1.0 * x^2  2.0
for doing that. In particular, this is not what the user wants. This kind of conversion is a can of worms. If you want 100 bits of your number, and start by converting the coefficients to floating points with 100 bits of precision you might loose your roots.
Note that in sympy they solve the original equation with appropriate root finding algorithms on rational numbers.
comment:23 in reply to: ↑ 22 Changed 22 months ago by
Replying to vdelecroix:
Replying to rws:
Replying to vdelecroix:
numerical_approx
is very wrong when evaluating. It convertsx^2  2
tox^2  2.0
and hence loosing precision for no good reason.I disagree in this case. The result is exactly what was asked for.
The problem under discussion is that you have a number specified by an equation like
x^2  2 = 0
. Now, you want an numerical approximation of it.
No, that is solving. N()
just converts symbolic expressionsif they happen to contain symbols you won't get a number, you get an error. _convert()
helps with that.
Note that in sympy they solve the original equation with appropriate root finding algorithms on rational numbers.
This has nothing to do with this ticket. This ticket is about losing precision in expressions that can be FP evaluated because they contain no symbols but may contain functions. While the result precision from the function at hand complex_root_of
is in principle not affected by the exactness of the index there may be existing/future functions where it is. This can be fixed by not FP converting exact function arguments and letting the function itself (i.e. its evalf
member) decide what to do with exact arguments. I may well be wrong, and the best solution instead is a type database for function arguments...
comment:24 in reply to: ↑ 22 Changed 22 months ago by
Replying to vdelecroix:
Note that in sympy they solve the original equation with appropriate root finding algorithms on rational numbers.
Yes but we don't do the solving. We let SymPy do it.
comment:25 Changed 22 months ago by
 Branch changed from u/rws/doctest_failures_related_to_sympy_crootof to u/rws/24378
comment:26 Changed 22 months ago by
 Branch changed from u/rws/24378 to u/rws/doctest_failures_related_to_sympy_crootof
 Status changed from needs_work to needs_review
comment:27 Changed 22 months ago by
 Branch changed from u/rws/doctest_failures_related_to_sympy_crootof to u/rws/24378
 Commit changed from a93662faed523eb117f4ce0197b3178855849fd2 to ac7681458cdeb8b6118080f81f3d9601db485021
New commits:
ac76814  24378: avoid doctest fails

comment:28 Changed 22 months ago by
See #24397 for the fix.
comment:29 Changed 22 months ago by
 Status changed from needs_review to needs_work
You should add the ticket number: # known bug (Trac #24397)
.
comment:30 Changed 22 months ago by
 Commit changed from ac7681458cdeb8b6118080f81f3d9601db485021 to 49c6d614b4293059911f19ccedb87a3c5e96df35
Branch pushed to git repo; I updated commit sha1. New commits:
49c6d61  24378: cosmetics

comment:31 Changed 22 months ago by
 Status changed from needs_work to needs_review
comment:32 Changed 22 months ago by
 Branch changed from u/rws/24378 to u/rws/243781
comment:33 Changed 22 months ago by
 Commit changed from 49c6d614b4293059911f19ccedb87a3c5e96df35 to ae3a1e0be21a0aecbb46791fc2cacf84495eee5c
Fortunately this can be resolved easily.
New commits:
ae3a1e0  24387: complex_root_of uses inexact index

comment:34 Changed 22 months ago by
I have added the information to https://github.com/pynac/pynac/wiki/%7Cfloatingpointevaluation, but Sage Function
initialization options need better docs too.
comment:35 Changed 22 months ago by
 Status changed from needs_review to needs_work
If this fixes the actual underlying issue, could you add
sage: complex_root_of(x^81, 7).n(2)
as a doctest?
comment:36 Changed 22 months ago by
It fixes the issue but there are other problems at superlow precision.
comment:37 Changed 22 months ago by
 Commit changed from ae3a1e0be21a0aecbb46791fc2cacf84495eee5c to 8c3f951c7b5f726260ccadb74368713d90740d93
Branch pushed to git repo; I updated commit sha1. New commits:
8c3f951  24378: set minimum digits; convert to given prec

comment:38 Changed 22 months ago by
 Status changed from needs_work to needs_review
comment:39 Changed 22 months ago by
 Reviewers set to Jeroen Demeyer
 Status changed from needs_review to needs_work
The expression prec*3/10
will behave differently on Python 2 and Python 3. You should either use //
or from __future__ import division
such that it works the same on Python 2 and Python 3.
comment:40 followup: ↓ 41 Changed 22 months ago by
What is the meaning of the factor 3/10
anyway?
comment:41 in reply to: ↑ 40 ; followup: ↓ 42 Changed 22 months ago by
Replying to jdemeyer:
What is the meaning of the factor
3/10
anyway?
An approximation to log(2,10)
(EDITED) which is good enough until about 1000 bits precision.
comment:42 in reply to: ↑ 41 Changed 22 months ago by
comment:43 Changed 22 months ago by
 Commit changed from 8c3f951c7b5f726260ccadb74368713d90740d93 to 8e65608d35c2527bcf6a7ebba8eadc7eb0377c38
Branch pushed to git repo; I updated commit sha1. New commits:
8e65608  24378: don't prematurely optimize

comment:44 Changed 22 months ago by
 Status changed from needs_work to needs_review
comment:45 Changed 22 months ago by
Ping?
comment:46 Changed 22 months ago by
ceil(prec*log(2,10)))
is terrible. Why not using 0.3010299956639812
as suggested in comment:42? A possible alternative would be
from math import log10 int(prec * log10(2))
You definitely do not want to use two symbolic functions here.
comment:47 Changed 22 months ago by
 Commit changed from 8e65608d35c2527bcf6a7ebba8eadc7eb0377c38 to 14ed7c6f210f4e809c3458dc54315542bbf3547b
Branch pushed to git repo; I updated commit sha1. New commits:
14ed7c6  24378: fix previous commit

comment:48 Changed 22 months ago by
Or better yet, use the sympy function prec_to_dps
which is meant to convert bits to digits:
from sympy.core.evalf import prec_to_dps
comment:49 Changed 22 months ago by
Thanks both. I'll make a fresh branch.
comment:50 Changed 22 months ago by
 Branch changed from u/rws/243781 to u/rws/243782
comment:51 Changed 22 months ago by
 Commit changed from 14ed7c6f210f4e809c3458dc54315542bbf3547b to 277a403ef00692247f9853d89322f9a464abd471
A minor note is that the results from prec_dps(n)
are not identical to the previously proposed formulae at small values, even with a suitable shift.
New commits:
277a403  24378: complex_root_of uses inexact index

comment:52 Changed 22 months ago by
Good for me if this passes patchbot testing.
comment:53 Changed 22 months ago by
 Status changed from needs_review to positive_review
comment:54 Changed 22 months ago by
 Branch changed from u/rws/243782 to 277a403ef00692247f9853d89322f9a464abd471
 Resolution set to fixed
 Status changed from positive_review to closed
That exact arguments are made inexact is a bug in itself. But that they are made complex (EDIT: in some machines) is beyond me.
New commits:
24378: Doctest failures related to sympy