Patchbot failure metaticket

[mderickx]

The goal of this metaticket is to make it easy to see if there is already a ticket for failures of some patchbots. If a patchbot failure is not on the list, please make ticket with blocker priority for it, if it does not yet exist and add it here together with a list of the affected files!

8.1.beta5

#23732 optional package libtheora does not install

sage -i libtheora

Elliptic curve failures: #23840

src/sage/schemes/elliptic_curves/ell_number_field.py

#23871 Assorted doctest failures due to optional packages

local/lib/python2.7/site-packages/sagenb/notebook/cell.py  
local/lib/python2.7/site-packages/sagenb/notebook/challenge.py  
local/lib/python2.7/site-packages/sagenb/notebook/notebook.py  
local/lib/python2.7/site-packages/sagenb/notebook/template.py  
local/lib/python2.7/site-packages/sagenb/notebook/worksheet.py  
src/doc/common/conf.py  
src/doc/de/tutorial/interfaces.rst  
src/doc/en/constructions/groups.rst  
src/doc/en/tutorial/interfaces.rst  
src/doc/fr/tutorial/interfaces.rst  
src/doc/ja/tutorial/interfaces.rst  
src/doc/pt/tutorial/interfaces.rst  
src/doc/ru/tutorial/interfaces.rst  
src/sage/categories/finite_permutation_groups.py  
src/sage/coding/code_bounds.py  
src/sage/coding/databases.py  
src/sage/coding/guava.py  
src/sage/coding/linear_code.py  
src/sage/combinat/designs/block_design.py  
src/sage/combinat/designs/database.py  
src/sage/combinat/designs/design_catalog.py  
src/sage/combinat/designs/incidence_structures.py  
src/sage/combinat/integer_vectors_mod_permgroup.py  
src/sage/combinat/sloane_functions.py  
src/sage/ext/memory.pyx  
src/sage/graphs/generators/classical_geometries.py  
src/sage/graphs/generators/smallgraphs.py  
src/sage/graphs/strongly_regular_db.pyx  
src/sage/groups/generic.py  
src/sage/groups/perm_gps/permgroup.py  
src/sage/groups/perm_gps/permgroup_named.py  
src/sage/manifolds/differentiable/affine_connection.py  
src/sage/manifolds/differentiable/vectorfield.py  
src/sage/misc/sagedoc.py  
src/sage/parallel/decorate.py  
src/sage/parallel/multiprocessing_sage.py  
src/sage/repl/interpreter.py  
src/sage/repl/ipython_tests.py  
src/sage/rings/integer.pyx  
src/sage/rings/number_field/galois_group.py  
src/sage/rings/number_field/number_field.py  
src/sage/rings/polynomial/polynomial_rational_flint.pyx  
src/sage/tensor/modules/comp.py  
src/sage/tests/cmdline.py  
src/sage/tests/gap_packages.py 

8.1.beta4

#23637: failing doctest in pynormaliz

src/sage/geometry/polyhedron/backend_normaliz.py

#23596: Update GLPK to 4.63

src/sage/numerical/backends/generic_backend.pyx  
src/sage/numerical/backends/glpk_exact_backend.pyx  
src/sage/numerical/backends/glpk_backend.pyx  

#23803 Allow graceful Sphinx upgrades

sage -t --long src/sage/misc/sagedoc.py  
sage -t --long src/doc/common/conf.py

At least on OpenSuSE: #21828 Crash in SubgraphSearch? of empty graph

src/sage/combinat/posets/poset_examples.py
src/sage/combinat/posets/posets.py