Opened 5 years ago
Closed 5 years ago
#16559 closed enhancement (fixed)
BrouwerVan Rees version of Wilson's decomposition
Reported by:  ncohen  Owned by:  

Priority:  major  Milestone:  sage6.4 
Component:  combinatorial designs  Keywords:  
Cc:  vdelecroix, knsam, dimpase, brett  Merged in:  
Authors:  Nathann Cohen  Reviewers:  Vincent Delecroix 
Report Upstream:  N/A  Work issues:  
Branch:  9bbd1f2 (Commits)  Commit:  9bbd1f24e0689368b338777363ae2199c79e5c17 
Dependencies:  #16884  Stopgaps: 
Description (last modified by )
Heeeeeere it is !
Nathann
Change History (34)
comment:1 Changed 5 years ago by
 Branch set to u/ncohen/16559
 Status changed from new to needs_review
comment:2 Changed 5 years ago by
 Commit set to 30370573b908d3f1f132f1fa87ced73326e1b9b4
comment:3 followup: ↓ 4 Changed 5 years ago by
 Status changed from needs_review to needs_info
Hi Nathann,
 Could we get rid of
simple_wilson_construction
from #16535 in this ticket or should I open a new one?
 You should provide at least a possibly stupid but nontrivial example of the new construction.
Vincent
comment:4 in reply to: ↑ 3 ; followup: ↓ 6 Changed 5 years ago by
Yo !
 Could we get rid of
simple_wilson_construction
from #16535 in this ticket or should I open a new one?
Be careful, this ticket only depends on #16500 as it was meant to be very local. If you want to touch other parts of the file you should base the changes higher in the patch stack.
 You should provide at least a possibly stupid but nontrivial example of the new construction.
Are all applications of Wilson's theorem that we have in Sage at the moment "trivial" ? Because that function handles them all :P
The thing is that it is not possible to use this construction for as long as incomplete_orthogonal_arrays
does not handle holes of size >1.
Nathann
comment:5 Changed 5 years ago by
 Status changed from needs_info to needs_review
comment:6 in reply to: ↑ 4 ; followup: ↓ 7 Changed 5 years ago by
Replying to ncohen:
 You should provide at least a possibly stupid but nontrivial example of the new construction.
Are all applications of Wilson's theorem that we have in Sage at the moment "trivial" ? Because that function handles them all
:P
The thing is that it is not possible to use this construction for as long as
incomplete_orthogonal_arrays
does not handle holes of size >1.
You can provide the OA explicitly. I mean: as it is, the function gives nothing new! Or more precisely, it does but only in principle... the only current positive effect is to slow down the Wilson construction!
I really think that it is a good thing to have. But with no application in mind it is a bit premature. I will try to build a nonalready existing example from the BrouwerVan Rees paper.
Vincent
comment:7 in reply to: ↑ 6 Changed 5 years ago by
You can provide the OA explicitly.
I can provide the OA
to wilson_decomposition
, but it will require a OA with holes of size >1 and for this the code will call incomplete_orthogonal_array
.
I mean: as it is, the function gives nothing new! Or more precisely, it does but only in principle... the only current positive effect is to slow down the Wilson construction!
Right now it cannot help us compute new designs, indeed. Later, when we will have ways to compute holes of size >1
, we will be able to use it. I don't work miracles, man. I can just implement constructions. And you can help me by making the incomplete_orthogonal_arrays
function return OA with bigger holes.
I really think that it is a good thing to have. But with no application in mind it is a bit premature.
And so what ?... You refuse the patch because of that ?... What do we earn by doing that ?..
Nathann
comment:8 Changed 5 years ago by
You do not need a function to build an incomplete array. Here is the OA(4,6)OA(4,2)
from Horton
OA = [ [1,1,5,1],[1,2,6,2],[1,3,3,5],[1,4,4,6],[1,5,1,3],[1,6,2,4], [2,1,2,6],[2,2,1,5],[2,3,6,1],[2,4,5,2],[2,5,3,4],[2,6,4,3], [3,1,6,4],[3,2,5,3],[3,3,1,6],[3,4,2,5],[3,5,4,1],[3,6,3,2], [4,1,4,5],[4,2,3,6],[4,3,5,4],[4,4,6,3],[4,5,2,2],[4,6,1,1], [5,1,1,2],[5,2,4,4],[5,3,2,3],[5,4,3,1], [6,1,3,3],[6,2,2,1],[6,3,4,2],[6,4,1,4]]
comment:9 Changed 5 years ago by
This is not sufficient, the holed OA must be returned by the incomplete_orthogonal_array
function.
Nathann
comment:10 Changed 5 years ago by
Hi Nathann,
The feature is cool, the doc is especially nice but I am not comfortable by letting it goes before having more IOA. Could we try adding few examples of IOA and put this one on top?
Vincent
comment:11 Changed 5 years ago by
Let's do that, then ...
Nathann
comment:12 Changed 5 years ago by
 Milestone changed from sage6.3 to sage6.4
comment:13 Changed 5 years ago by
And noooooowwwwwww that's hell to rebase _
comment:14 Changed 5 years ago by
 Commit changed from 30370573b908d3f1f132f1fa87ced73326e1b9b4 to 9afa21da1388480a4aaa78c8187a398e440680e2
Branch pushed to git repo; I updated commit sha1. This was a forced push. Last 10 new commits:
5031aee  trac #16879: Fix the import statements

0c1893f  trac #16879: Fix the doc

6a3869d  trac #16879: speed up

d7129d6  trac #16879: Trivial stuff

1979486  trac #16884: Remove OA constructors (they will be turned into QDM constructors)

f23e0cf  trac #16884: A database entry for Quasidifference matrices. +doc and stuff

f074c38  trac #16884: Convert OA(9,514) into a Vmt

781b168  trac #16884: is_quasi_difference_matrix

15c78ba  trac #16884: A V(12,185) that yields a OA(11,2406)

9afa21d  trac #16559: BrouwerVan Rees version of Wilson's decomposition

comment:15 Changed 5 years ago by
 Dependencies changed from #16500 to #16884
Now with a real example. It is an OA that Sage cannot build yet, but I will need to do a couple of things before it is made automatic. And I am a bit scared of the performances of the future find_wilson
function that will also handle the Brouwervan Rees generalization.
Nathann
comment:16 Changed 5 years ago by
 Commit changed from 9afa21da1388480a4aaa78c8187a398e440680e2 to 8916046ca141a64b8c50fee198f852b812216a82
Branch pushed to git repo; I updated commit sha1. This was a forced push. New commits:
8916046  trac #16559: BrouwerVan Rees version of Wilson's decomposition

comment:17 Changed 5 years ago by
Here is an additional commit that gives a correct error message when incomplete_orthogonal_array
cannot build what we need.
I also changed the example for the Brouwervan Rees construction. While it works, it is a bit sad that it only gives an OA(5,256)
:PPPP
Anyway...
Nathann
comment:18 Changed 5 years ago by
 Commit changed from 8916046ca141a64b8c50fee198f852b812216a82 to cf1145783cc67664986ced298e0f31d4e6c1d3b4
Branch pushed to git repo; I updated commit sha1. New commits:
cf11457  trac #16559: Fixed error message for large holes and smaller example

comment:19 Changed 5 years ago by
 Commit changed from cf1145783cc67664986ced298e0f31d4e6c1d3b4 to 9b8ba79c4956a5962a2fc3d7491cc7ae58907511
Branch pushed to git repo; I updated commit sha1. New commits:
9b8ba79  trac #16559: Fixes reported by Julian R. Abel

comment:20 Changed 5 years ago by
 Description modified (diff)
comment:21 Changed 5 years ago by
 Status changed from needs_review to needs_work
I got doctest failure with the development version
File "orthogonal_arrays.py", line 565, in sage.combinat.designs.orthogonal_arrays.wilson_construction Failed example: OA = designs.orthogonal_array(6,11) Expected nothing Got: doctest:1: DeprecationWarning: This function will soon be removed. Use the designs.orthogonal_arrays.* functions instead See http://trac.sagemath.org/17034 for details.
and
File "orthogonal_arrays.py", line 567, in sage.combinat.designs.orthogonal_arrays.wilson_construction Failed example: OAb = wilson_construction(OA,5,11,21,[[(5,5)]]) Exception raised: Traceback (most recent call last): File "/opt/sage_flatsurf/local/lib/python2.7/sitepackages/sage/doctest/forker.py", line 488, in _run self.compile_and_execute(example, compiler, test.globs) File "/opt/sage_flatsurf/local/lib/python2.7/sitepackages/sage/doctest/forker.py", line 851, in compile_and_execute exec(compiled, globs) File "<doctest sage.combinat.designs.orthogonal_arrays.wilson_construction[10]>", line 1, in <module> OAb = wilson_construction(OA,Integer(5),Integer(11),Integer(21),[[(Integer(5),Integer(5))]]) File "/opt/sage_flatsurf/local/lib/python2.7/sitepackages/sage/combinat/designs/orthogonal_arrays.py", line 615, in wilson_construction profile) for profile in block_profiles} File "/opt/sage_flatsurf/local/lib/python2.7/sitepackages/sage/combinat/designs/orthogonal_arrays.py", line 615, in <dictcomp> profile) for profile in block_profiles} File "/opt/sage_flatsurf/local/lib/python2.7/sitepackages/sage/combinat/designs/orthogonal_arrays.py", line 1240, in incomplete_orthogonal_array elif x==1 and any(uu==y and mu<=1 and lmbda==1 and k<=kk+1 for (nn,kk,lmbda,mu,uu) in QDM.get((n,1),[])): File "/opt/sage_flatsurf/local/lib/python2.7/sitepackages/sage/combinat/designs/orthogonal_arrays.py", line 1240, in <genexpr> elif x==1 and any(uu==y and mu<=1 and lmbda==1 and k<=kk+1 for (nn,kk,lmbda,mu,uu) in QDM.get((n,1),[])): ValueError: need more than 4 values to unpack
Vincent
comment:22 Changed 5 years ago by
 Status changed from needs_work to needs_review
Sorry about that. I just fixed it.
Nathann
comment:23 Changed 5 years ago by
 Commit changed from 9b8ba79c4956a5962a2fc3d7491cc7ae58907511 to fe62ae45eb1ce7642aa35380c8e4fc6033405f9f
comment:24 followup: ↓ 25 Changed 5 years ago by
 Branch changed from u/ncohen/16559 to u/vdelecroix/16559
 Commit changed from fe62ae45eb1ce7642aa35380c8e4fc6033405f9f to 12177d8c1dd4802baa2608ae4736d805932bca5c
 Status changed from needs_review to needs_info
Hi Nathann,
Stupid bugfix for the doc in my commit.
Do you mind if I allow to have OA=None
in wilson construction and move the code from simple_wilson_construction
(in find_orthogonal_array_build.py
) to wilson_construction
(in orthogonal_array.py
). It should be fine with your next tickets, but in the future we should get rid of simple_wilson_construction
.
Vincent
New commits:
12177d8  trac #16559: fix documentation

comment:25 in reply to: ↑ 24 Changed 5 years ago by
Yo !
Do you mind if I allow to have
OA=None
in wilson construction and move the code fromsimple_wilson_construction
(infind_orthogonal_array_build.py
) towilson_construction
(inorthogonal_array.py
). It should be fine with your next tickets, but in the future we should get rid ofsimple_wilson_construction
.
No problem, this function is not very complicated at the moment anyway !
Nathann
comment:26 Changed 5 years ago by
 Commit changed from 12177d8c1dd4802baa2608ae4736d805932bca5c to bdd5f8b57891adf75e85c59c817669b1038172b7
Branch pushed to git repo; I updated commit sha1. New commits:
bdd5f8b  trac #16559: remove simple_wilson_construction

comment:27 Changed 5 years ago by
Hi Nathann,
I moved the code of simple_wilson_construction
to wilson_construction
. I had not enough energy to make the explanations for the Brouwer van Rees construction... so it is currently a NotImplementedError
.
I am happy with the current version, but it would be better to add one line for the explanations.
Vincent
comment:28 Changed 5 years ago by
 Status changed from needs_info to needs_review
comment:29 Changed 5 years ago by
Hello,
You do not have to deprecate this function, it can be removed. It is only internal stuff, not really meant to be called directly.
Nathann
comment:30 Changed 5 years ago by
 Commit changed from bdd5f8b57891adf75e85c59c817669b1038172b7 to 3eaf73f7cf8ba3b62710a1b1435352e746b5b33f
Branch pushed to git repo; I updated commit sha1. New commits:
3eaf73f  trac #16559: really remove simple_wilson_construction

comment:31 Changed 5 years ago by
 Branch changed from u/vdelecroix/16559 to public/16559
 Commit 3eaf73f7cf8ba3b62710a1b1435352e746b5b33f deleted
I merged your two commits into one and added one with the description. If that's okay for you, ...
Nathann
comment:32 Changed 5 years ago by
 Commit set to 9bbd1f24e0689368b338777363ae2199c79e5c17
Branch pushed to git repo; I updated commit sha1. New commits:
8916046  trac #16559: BrouwerVan Rees version of Wilson's decomposition

cf11457  trac #16559: Fixed error message for large holes and smaller example

9b8ba79  trac #16559: Fixes reported by Julian R. Abel

b0419b8  trac #16559: Merged with 6.4.beta6

fe62ae4  trac #16559: Bugfix

12177d8  trac #16559: fix documentation

3825155  trac #16559: remove simple_wilson_construction

9bbd1f2  trac #16559: A description for the Brouwervan Rees construction

comment:33 Changed 5 years ago by
 Reviewers set to Vincent Delecroix
 Status changed from needs_review to positive_review
Good to go!
Vincent
comment:34 Changed 5 years ago by
 Branch changed from public/16559 to 9bbd1f24e0689368b338777363ae2199c79e5c17
 Resolution set to fixed
 Status changed from positive_review to closed
Branch pushed to git repo; I updated commit sha1. Last 10 new commits:
trac #16423: Table of MOLS from the handbook and comparison with Sage
trac #16423: tiny code improvement and alignment
trac #16423: Aligning the alignment
trac #16423: Broken doctests
trac #16499: Cheap speedup in the OA recursive constructions
trac #16500: New recursive constructions of Orthogonal Arrays
trac #16500: Simplified find_recursive_construction
trac #16500: doc + speedup
trac #16500: Typoes in the doc
trac #16559: BrouwerVan Rees version of Wilson's decomposition