#16541 closed enhancement (fixed)
MOLS table : 10 000 integers
Reported by:  ncohen  Owned by:  

Priority:  major  Milestone:  sage6.3 
Component:  combinatorial designs  Keywords:  
Cc:  vdelecroix, knsam, brett  Merged in:  
Authors:  Nathann Cohen  Reviewers:  Volker Braun, Vincent Delecroix 
Report Upstream:  N/A  Work issues:  
Branch:  911c676 (Commits, GitHub, GitLab)  Commit:  
Dependencies:  #16423  Stopgaps: 
Description (last modified by )
Here it is !
Nathann
New SPKG : http://www.steinertriples.fr/ncohen/tmp/combinatorial_designs20140630.tar.bz2
Change History (44)
comment:1 Changed 7 years ago by
 Branch set to u/ncohen/16541
 Status changed from new to needs_review
comment:2 Changed 7 years ago by
 Commit set to 3bdf9d801c467d3d8e2d1b3d94997b8d14362087
comment:3 Changed 7 years ago by
Cool!
 Would be better if you read the handbook_data.txt only if
compare=True
.  Would be nice if we could print the table of the handbook itself! Like a
sage/compare/handbook
alternative
Vincent
comment:4 Changed 7 years ago by
 Commit changed from 3bdf9d801c467d3d8e2d1b3d94997b8d14362087 to 29c48c3b22f1fc2972630409d3b77d35a168540e
Branch pushed to git repo; I updated commit sha1. This was a forced push. New commits:
29c48c3  trac #16541: MOLS table : 10 000 integers

comment:5 Changed 7 years ago by
I added a "if" to avoid loading the file when it is not necessary. If you want to be able to print the handbook's table you will have to add a commit.
Nathann
comment:6 Changed 7 years ago by
 Status changed from needs_review to positive_review
Good to go! (doc builds and doctests pass)
Vincent
comment:7 Changed 7 years ago by
Thanks !
Nathann
comment:9 Changed 7 years ago by
Missing file?
sage t long src/sage/combinat/designs/latin_squares.py ********************************************************************** File "src/sage/combinat/designs/latin_squares.py", line 46, in sage.combinat.designs.latin_squares Failed example: MOLS_table(15,compare=True) # long time Exception raised: Traceback (most recent call last): File "/Users/buildbot/build/sage/bsd1/sage_git/build/local/lib/python2.7/sitepackages/sage/doctest/forker.py", line 480, in _run self.execute(example, compiled, test.globs) File "/Users/buildbot/build/sage/bsd1/sage_git/build/local/lib/python2.7/sitepackages/sage/doctest/forker.py", line 839, in execute exec compiled in globs File "<doctest sage.combinat.designs.latin_squares[2]>", line 1, in <module> MOLS_table(Integer(15),compare=True) # long time File "/Users/buildbot/build/sage/bsd1/sage_git/build/local/lib/python2.7/sitepackages/sage/combinat/designs/latin_squares.py", line 470, in MOLS_table handbook_file = open("handbook_data.txt",'r') IOError: [Errno 2] No such file or directory: 'handbook_data.txt' ********************************************************************** File "src/sage/combinat/designs/latin_squares.py", line 460, in sage.combinat.designs.latin_squares.MOLS_table Failed example: MOLS_table(5,compare=True) # long time Exception raised: Traceback (most recent call last): File "/Users/buildbot/build/sage/bsd1/sage_git/build/local/lib/python2.7/sitepackages/sage/doctest/forker.py", line 480, in _run self.execute(example, compiled, test.globs) File "/Users/buildbot/build/sage/bsd1/sage_git/build/local/lib/python2.7/sitepackages/sage/doctest/forker.py", line 839, in execute exec compiled in globs File "<doctest sage.combinat.designs.latin_squares.MOLS_table[2]>", line 1, in <module> MOLS_table(Integer(5),compare=True) # long time File "/Users/buildbot/build/sage/bsd1/sage_git/build/local/lib/python2.7/sitepackages/sage/combinat/designs/latin_squares.py", line 470, in MOLS_table handbook_file = open("handbook_data.txt",'r') IOError: [Errno 2] No such file or directory: 'handbook_data.txt' **********************************************************************
comment:10 Changed 7 years ago by
nope, it is in the commit 29c48c3... I don't understand the error!!
EDIT: and the doctest pass on my computer!
REDIT: actually depending from where you run the computation the test fails or not
from SAGE_ROOT running
sage t src/sage/combinat/designs/latin_squares.py
does fail!!
Vincent
comment:11 followup: ↓ 15 Changed 7 years ago by
Easy solution:
move the file handbook_data.txt into local/share (where most of the raw data belong) and then use
import os.path from sage.misc.misc import SAGE_SHARE handbook_file = open(os.path.join(SAGE_SHARE, "handbook_data.txt"),'r') ...
What do you think Nathann?
Vincent
comment:12 Changed 7 years ago by
 Status changed from positive_review to needs_work
comment:13 followup: ↓ 14 Changed 7 years ago by
All right, proposition at "public/16541v2"?
By the way Nathann, there is no license issue with copying the whole MOLS table from the handbook?
Vincent
comment:14 in reply to: ↑ 13 Changed 7 years ago by
All right, proposition at "public/16541v2"?
By the way Nathann, there is no license issue with copying the whole MOLS table from the handbook?
You mean that whoever copies/paste Sage's table of MOLS in a paper has to publish it in open access, or that whoever uses our table in a software has to license it with the GPL ? :P
I take it as a mathematical result. Or 10 000 mathematical results. Of which a good part has been obtained with Sage's functions ;)
Nathann
comment:15 in reply to: ↑ 11 Changed 7 years ago by
Yo !
Easy solution:
move the file handbook_data.txt into local/share (where most of the raw data belong) and then use
import os.path from sage.misc.misc import SAGE_SHARE handbook_file = open(os.path.join(SAGE_SHARE, "handbook_data.txt"),'r') ...What do you think Nathann?
I don't know if I can just write a file to SAGE_SHARE
or if it has to go through a SPKG _
Nathann
comment:16 Changed 7 years ago by
 Commit changed from 29c48c3b22f1fc2972630409d3b77d35a168540e to f4f924081d9aa4e4124bb93683fbf5c9ef116b7f
Branch pushed to git repo; I updated commit sha1. This was a forced push. New commits:
f4f9240  trac #16541: MOLS table : 10 000 integers

comment:17 Changed 7 years ago by
 Description modified (diff)
 Status changed from needs_work to needs_review
Branch updated with a new "designs" spkg. And the tar.bz2 that should be located in SAGE_ROOT/upstream/ is there :
http://www.steinertriples.fr/ncohen/tmp/designs20140630.tar.bz2
Nathann
comment:18 followup: ↓ 20 Changed 7 years ago by
Hi Nathann,
You are probably right with the spkg. In order to work, the spkg needs to be in standard but the policy is that new spkg goes into optional. Either you write a try/except in the function to test whether the file is here or you ask on sagedevel is everybody is ok to add a trivial text file to the list of standard spkg (the file is really like the database of conway polynomials, si I guess this is fine).
Vincent
comment:19 Changed 7 years ago by
 Status changed from needs_review to needs_info
comment:20 in reply to: ↑ 18 Changed 7 years ago by
You are probably right with the spkg. In order to work, the spkg needs to be in standard but the policy is that new spkg goes into optional.
I don't think that anybody is stupid enough to tell me that I need to wait one year to add a text file into Sage.
I will write to Sage, if that's a problem.
Nathann
comment:21 Changed 7 years ago by
I'm ok with making it a standard spkg. Note that, by definition, this means that it is installed by default. You need a corresponding entry in build/deps
for that.
A more specific name than "designs" would be nice, maybe "combinatorial_designs". But design alone isn't even unique in math, e.g. dessins d'enfants.
A saner way to install the file would be to mkdir p the target directory and then just copy the file. Blowing the whole directory away is unnecessary and potentially counterproductive in the future, maybe you'll add an optional huge database later on. Not to mention umasks.
comment:22 Changed 7 years ago by
 Commit changed from f4f924081d9aa4e4124bb93683fbf5c9ef116b7f to f20116d6eb35ebf80e71f6498603938b0326edec
Branch pushed to git repo; I updated commit sha1. This was a forced push. New commits:
f20116d  trac #16541: MOLS table : 10 000 integers

comment:23 Changed 7 years ago by
 Description modified (diff)
 Status changed from needs_info to needs_review
New commits:
f20116d  trac #16541: MOLS table : 10 000 integers

comment:24 Changed 7 years ago by
Is that right ?
Nathann
comment:25 Changed 7 years ago by
 Status changed from needs_review to positive_review
At least for me this is good!
Vincent
comment:26 Changed 7 years ago by
 Status changed from positive_review to needs_work
Can you add a == License ==
section? Data cannot be copyrighted, but the way it is stored in a database is. Not specifying a license means we are not allowed to distribute it.
comment:27 Changed 7 years ago by
And what should I put there ? GPL2 or something ? Is that a correct license for data ?
Nathann
comment:28 Changed 7 years ago by
Besides how can I give a license to a data I just found in a book ? O_o
comment:29 Changed 7 years ago by
GPL or Public Domain is fine. The data is not copyrighted, its the presentation. You choose the license since you curated the electronic database (even if its a bit silly in this case).
comment:30 Changed 7 years ago by
 Commit changed from f20116d6eb35ebf80e71f6498603938b0326edec to e282f17bd361245dc899a4e56fede2d52f0efdba
comment:32 Changed 7 years ago by
 Status changed from needs_review to positive_review
comment:33 Changed 7 years ago by
 Status changed from positive_review to needs_work
Code still refers to designs/MOLS_table.txt
. Also, I'd recommend to use os.path.join to concatenate paths.
comment:34 Changed 7 years ago by
Arg, sorry... And obviously doctests passed because the file was installed on my computed T_T
Nathann
comment:35 Changed 7 years ago by
 Commit changed from e282f17bd361245dc899a4e56fede2d52f0efdba to cd902358a5b5138dcb2550339f8073d557d369db
Branch pushed to git repo; I updated commit sha1. New commits:
cd90235  trac #16541: New directory

comment:36 Changed 7 years ago by
 Status changed from needs_work to needs_review
comment:37 Changed 7 years ago by
 Status changed from needs_review to needs_work
Its still not installed by default. You also need to define the COMBINATORIAL_DESIGNS
variable somewhere, there should be a corresponding line COMBINATORIAL_DESGINS=newest_version combinatorial_designs
(or so, with corrected backticks) in build/install
comment:38 Changed 7 years ago by
 Commit changed from cd902358a5b5138dcb2550339f8073d557d369db to 911c6764de1702a1471815d5379ed105a2d363a3
Branch pushed to git repo; I updated commit sha1. New commits:
911c676  trac #16541: make it a default spkg

comment:39 Changed 7 years ago by
 Status changed from needs_work to needs_review
comment:40 Changed 7 years ago by
ping ?
comment:41 Changed 7 years ago by
Pom Pom Pom ...
comment:42 Changed 7 years ago by
 Reviewers changed from Vincent Delecroix to Volker Braun, Vincent Delecroix
 Status changed from needs_review to positive_review
Everything went fine on my computer... I set it to positive review.
Vincent
comment:43 Changed 7 years ago by
 Branch changed from u/ncohen/16541 to 911c6764de1702a1471815d5379ed105a2d363a3
 Resolution set to fixed
 Status changed from positive_review to closed
comment:44 Changed 7 years ago by
 Commit 911c6764de1702a1471815d5379ed105a2d363a3 deleted
Fix for the graph database booboo in #16735
Branch pushed to git repo; I updated commit sha1. Last 10 new commits:
trac #16430: put back the seealso
trac #16347: Wilson's construction with two truncated groups
trac #16437: cut the branches in W. dec. with two trunc. blocks
trac #16347: use is_sum_of_squares_pyx instead of two_squares
trac #16347: doc + simplifications
trac #16423: Table of MOLS from the handbook and comparison with Sage
trac #16423: tiny code improvement and alignment
trac #16423: Aligning the alignment
trac #16423: Broken doctests
trac #16541: MOLS table : 10 000 integers