Opened 9 years ago

Closed 9 years ago

#15198 closed enhancement (fixed)

Upgrade Pynac to 0.3.1

Reported by: Eviatar Bach Owned by:
Priority: major Milestone: sage-6.2
Component: packages: standard Keywords:
Cc: Burcin Erocal Merged in:
Authors: Jean-Pierre Flori Reviewers: Volker Braun
Report Upstream: N/A Work issues:
Branch: 9bcfc04 (Commits, GitHub, GitLab) Commit: 9bcfc042078b3a35767b2fc69dbd59db4b3063a1
Dependencies: #12289, #14778, #13356 Stopgaps:

Status badges

Description (last modified by Jean-Pierre Flori)

Let's update to Pynac 0.3.1.

Use upstream tarball at:

To be merged with #14778

Attachments (2)

pynac-0.3.1.tar.bz2 (495.0 KB) - added by Eviatar Bach 9 years ago.
pynac-0.3.1.spkg (598.6 KB) - added by Eviatar Bach 9 years ago.

Download all attachments as: .zip

Change History (22)

comment:1 Changed 9 years ago by Eviatar Bach

Dependencies: #12289, #14778

Changed 9 years ago by Eviatar Bach

Attachment: pynac-0.3.1.tar.bz2 added

comment:2 Changed 9 years ago by Eviatar Bach

Attached is a proposed Pynac release, which should be approved by Burcin beforehand. This release is a dependency for #13356, #14800, #12289, and #14778, while #12289, #14778, #13356 are a dependency for this patch (of course circular dependencies don't make sense, but they need to be merged in the same release) since they modify Sage code and doctests which this release will break.

Last edited 9 years ago by Eviatar Bach (previous) (diff)

comment:3 Changed 9 years ago by Eviatar Bach

Dependencies: #12289, #14778#12289, #14778, #13356

comment:4 Changed 9 years ago by Andrey Novoseltsev

Is it supposed to be an spkg?

comment:5 Changed 9 years ago by Eviatar Bach

The tarball here is old. Use the one at https://bitbucket.org/pynac/www/src/2f581d33ea462ac3573dffb84acf0985eb911706/download/pynac-0.3.1.tar.bz2?at=default

I think you can just rename it to pynac-0.3.1.spkg and put it in spkg/standard.

Last edited 9 years ago by Eviatar Bach (previous) (diff)

comment:6 Changed 9 years ago by Andrey Novoseltsev

But I am not going to rebuild Sage to test this: the usual way is to run sage -i hyperlink-to-new-spkg - why isn't it made by Sage packaging command?

comment:7 Changed 9 years ago by Eviatar Bach

Sorry, you're right, it's not a proper spkg. I'll make one.

Changed 9 years ago by Eviatar Bach

Attachment: pynac-0.3.1.spkg added

comment:8 Changed 9 years ago by Eviatar Bach

Okay, here's an spkg.

comment:9 Changed 9 years ago by Andrey Novoseltsev

Does not work:

┌────────────────────────────────────────────────────────────────────┐
│ Sage Version 5.12.beta5, Release Date: 2013-09-06                  │
│ Type "notebook()" for the browser-based notebook interface.        │
│ Type "help()" for help.                                            │
└────────────────────────────────────────────────────────────────────┘
┏━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━┓
┃ Warning: this is a prerelease version, and it may be unstable.     ┃
┗━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━┛
Forcing sage-location, probably because a new package was installed.
Updating various hardcoded paths...
(Please wait at most a few minutes.)
DO NOT INTERRUPT THIS.
Done updating paths.
terminate called after throwing an instance of 'std::bad_alloc'
  what():  std::bad_alloc
------------------------------------------------------------------------
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/home/novoselt/sage.git/local/lib/libpython2.7.so.1.0(PyImport_ExecCodeModuleEx+0xad)[0x7f7677d1694d]
/home/novoselt/sage.git/local/lib/libpython2.7.so.1.0(+0x10bcee)[0x7f7677d16cee]
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/home/novoselt/sage.git/local/lib/libpython2.7.so.1.0(+0x10d023)[0x7f7677d18023]
/home/novoselt/sage.git/local/lib/libpython2.7.so.1.0(PyImport_ImportModuleLevel+0x199)[0x7f7677d18619]
/home/novoselt/sage.git/local/lib/libpython2.7.so.1.0(+0xed08f)[0x7f7677cf808f]
/home/novoselt/sage.git/local/lib/libpython2.7.so.1.0(PyEval_EvalFrameEx+0x5af2)[0x7f7677cffbd2]
/home/novoselt/sage.git/local/lib/libpython2.7.so.1.0(PyEval_EvalFrameEx+0x5de9)[0x7f7677cffec9]
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/home/novoselt/sage.git/local/lib/libpython2.7.so.1.0(PyEval_EvalCodeEx+0x822)[0x7f7677d00a02]
/home/novoselt/sage.git/local/lib/libpython2.7.so.1.0(+0x77ce7)[0x7f7677c82ce7]
/home/novoselt/sage.git/local/lib/libpython2.7.so.1.0(PyObject_Call+0x4e)[0x7f7677c5775e]
/home/novoselt/sage.git/local/lib/libpython2.7.so.1.0(PyEval_EvalFrameEx+0x1289)[0x7f7677cfb369]
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/home/novoselt/sage.git/local/lib/libpython2.7.so.1.0(PyEval_EvalFrameEx+0x45ed)[0x7f7677cfe6cd]
/home/novoselt/sage.git/local/lib/libpython2.7.so.1.0(PyEval_EvalCodeEx+0x822)[0x7f7677d00a02]
/home/novoselt/sage.git/local/lib/libpython2.7.so.1.0(PyEval_EvalFrameEx+0x45ed)[0x7f7677cfe6cd]
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/home/novoselt/sage.git/local/lib/libpython2.7.so.1.0(PyRun_SimpleFileExFlags+0xed)[0x7f7677d22f3d]
/home/novoselt/sage.git/local/lib/libpython2.7.so.1.0(Py_Main+0xc22)[0x7f7677d38a72]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf5)[0x7f7676f5f995]
python[0x4006ee]
------------------------------------------------------------------------
Attaching gdb to process id 8592.
Unable to start gdb (not installed?)

GDB is not installed.
Install the gdb spkg (sage -f gdb) for enhanced tracebacks.
------------------------------------------------------------------------
Unhandled SIGABRT: An abort() occurred in Sage.
This probably occurred because a *compiled* component of Sage has a bug
in it and is not properly wrapped with sig_on(), sig_off(). You might
want to run Sage under gdb with 'sage -gdb' to debug this.
Sage will now terminate.
------------------------------------------------------------------------
/home/novoselt/bin/sage: line 134:  8592 Aborted                 "$SAGE_ROOT/src/bin/sage" "$@"

comment:10 Changed 9 years ago by Eviatar Bach

I got that error too, but after running sage -br it worked. Maybe it's necessary?

comment:11 Changed 9 years ago by Volker Braun

You definitely need to rebuild cython files whenever you change the pynac ABI...

comment:12 Changed 9 years ago by For batch modifications

Milestone: sage-6.1sage-6.2

comment:13 Changed 9 years ago by Jean-Pierre Flori

Description: modified (diff)

comment:14 Changed 9 years ago by Jean-Pierre Flori

Authors: Jean-Pierre Flori
Branch: u/jpflori/ticket/15198
Commit: 9bcfc042078b3a35767b2fc69dbd59db4b3063a1
Description: modified (diff)

With all the dependencies and this ticket, I just have one problem with "make ptest": it seems that

ascii_art(integral(exp(x + x^2)/(x+1), x))

takes ages.


New commits:

9bcfc04Update pynac to 0.3.1.

comment:15 Changed 9 years ago by Jean-Pierre Flori

With new pynac:

sage: %time ascii_art(integral(exp(x + x^2)/(x+1), x))
CPU times: user 158.72 s, sys: 0.46 s, total: 159.17 s
Wall time: 158.98 s
  /          
 |           
 |   2       
 |  x  + x   
 | e         
 | ------- dx
 |  x + 1    
 |           
/            

In fact it is already as slow with the develop branch so is a "no-issue" here. Without new pynac: {{{sage: %time ascii_art(integral(exp(x + x2)/(x+1), x)) CPU times: user 164.25 s, sys: 0.35 s, total: 164.61 s Wall time: 167.80 s

/

| | 2 | x + x | e | ------- dx | x + 1 |

/ }}} That's a ppc64 machine, who knows, maybe that's the problem.

Version 0, edited 9 years ago by Jean-Pierre Flori (next)

comment:16 Changed 9 years ago by Jean-Pierre Flori

Status: newneeds_review

comment:17 Changed 9 years ago by Volker Braun

The slow ascii art is #15636. The reason is that sympy tries to solve the integral...

comment:18 Changed 9 years ago by Jean-Pierre Flori

All dependencies are now positively reviewed.

comment:19 Changed 9 years ago by Volker Braun

Reviewers: Volker Braun

comment:20 Changed 9 years ago by Volker Braun

Branch: u/jpflori/ticket/151989bcfc042078b3a35767b2fc69dbd59db4b3063a1
Resolution: fixed
Status: needs_reviewclosed
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