Opened 9 years ago
Last modified 9 years ago
#13121 closed enhancement
Upgrade sagenb to 0.10.0 — at Version 19
Reported by:  kini  Owned by:  jason, mpatel, was 

Priority:  major  Milestone:  sage5.4 
Component:  notebook  Keywords:  sagenb 
Cc:  jhpalmieri, gutow, jyeo, rbeezer  Merged in:  
Authors:  Keshav kini  Reviewers:  
Report Upstream:  N/A  Work issues:  
Branch:  Commit:  
Dependencies:  #11080, #9774, #8473, #11913, #12299  Stopgaps: 
Description (last modified by )
This is a followup to #11080. During the review process of #11080, which stretched for quite a while, at some point we decided to have a feature freeze on the version of sagenb 0.9.x associated with #11080, just to simplify the review process. The purpose of this ticket is to incorporate some new features, bugfixes, code refactoring, etc. into the version of sagenb shipped with Sage, beyond what was reviewed in #11080. sagenb 0.10.0 contains the following (among other things):
 refactoring of the startup code, uWSGI and Tornado added as possible WSGI servers
 code allowing .sws files to be uploaded by supplying a URL pointing to the .sws as an argument to the upload page's URL
 new dependency on webassets for js/css autominification (not currently used in the master branch)
 the mathjax branch, and a doctest fix in sphinxify.py (#9774 depends on and contributed to this)
 support for uploading .sws files from the local disk via the command line (#8473 basically is this)
 refactoring of sageinspect to not have a duplication of code between the notebook and the Sage library (#11913 depends on this)
 Upgrading Jmol again and allowing for advanced interactive features more easily, solve some memory issues (#12299)
Changes not in sagenb itself but in how sagenb is incorporated into sage:
 No repository will be installed with sagenb  developers will need to clone sagenb themselves and install the new clone into their Sage installation manually (which is not difficult).
SPKG: http://wstein.org/home/keshav/files/sagenb0.10.0.spkg (a comparatively svelte 13 MB)
cd $SAGE_ROOT hg R local/bin qimport P http://trac.sagemath.org/sage_trac/rawattachment/ticket/9774/trac_9774scriptsmathjax.patch hg R local/bin qimport P http://trac.sagemath.org/sage_trac/rawattachment/ticket/13121/trac_13121scripts.patch hg R devel/sage qimport P http://trac.sagemath.org/sage_trac/rawattachment/ticket/9774/trac_9774mathjaxtry6.patch hg R devel/sage qimport P http://trac.sagemath.org/sage_trac/rawattachment/ticket/11913/trac_11913sage.patch hg R devel/sage qimport P http://trac.sagemath.org/sage_trac/rawattachment/ticket/12299/trac_12299allinone.patch ./sage b
Change History (20)
comment:1 Changed 9 years ago by
 Description modified (diff)
 Milestone changed from sage5.1 to sage5.2
comment:2 Changed 9 years ago by
 Cc jhpalmieri added
comment:3 Changed 9 years ago by
 Description modified (diff)
comment:4 Changed 9 years ago by
 Dependencies changed from #11080 to #11080, #9774, #8473, #11913
 Description modified (diff)
comment:5 Changed 9 years ago by
 Dependencies changed from #11080, #9774, #8473, #11913 to #11080, #9774, #8473, #11913, #12299
 Description modified (diff)
comment:6 Changed 9 years ago by
 Description modified (diff)
 Status changed from new to needs_review
I've released 0.9.1. The SPKG is here. Please test and review!
comment:7 Changed 9 years ago by
 Status changed from needs_review to needs_work
In spkginstall, the check
if [ n $SAGE64 ]; then
needs to take into account that $SAGE64
may be set to "no". According to SAGE_ROOT/spkg/bin/sagearchenv
, it should be unset, "no", or "yes", so you should test that it's set to "yes".
comment:8 Changed 9 years ago by
You should also take this possible change to CPPFLAGS into account. For example:

spkginstall
diff git a/spkginstall b/spkginstall
a b die () { 17 17 export CPATH="$CPATH""$SAGE_LOCAL"/include 18 18 export LIBRARY_PATH="$LIBRARY_PATH""$SAGE_LOCAL"/lib 19 19 20 export CPPFLAGS="I$SAGE_LOCAL/include $CPPFLAGS "20 export CPPFLAGS="I$SAGE_LOCAL/include $CPPFLAGS D_XOPEN_SOURCE=500" 21 21 export LDFLAGS="L$SAGE_LOCAL/lib $LDFLAGS" 22 22 23 if [ n $SAGE64]; then23 if [ $SAGE64 = "yes" ]; then 24 24 echo "Building with extra 64bit flags for MacOS X and Open Solaris." 25 25 if [ z $CFLAG64 ]; then 26 26 CFLAG64=m64
(even better, with a comment explaining why CPPFLAGS has been changed)
comment:9 Changed 9 years ago by
With these changes, this spkg builds on OS X Lion, sage.math, hawk, and skynet machines mark (after installing the openssl spkg from #13126), cicero, iras (with openssl), silius (with openssl), and taurus. So it's looking good to me.
comment:10 Changed 9 years ago by
 Description modified (diff)
comment:11 Changed 9 years ago by
 Status changed from needs_work to needs_review
SPKG updated with your changes, more or less:

spkginstall
diff git a/spkginstall b/spkginstall
a b 17 17 export CPATH="$CPATH""$SAGE_LOCAL"/include 18 18 export LIBRARY_PATH="$LIBRARY_PATH""$SAGE_LOCAL"/lib 19 19 20 export CPPFLAGS="I$SAGE_LOCAL/include $CPPFLAGS" 20 # note: the D_XOPEN_SOURCE=500 is to fix build errors in Twisted 12.1 on 21 # Solaris. See http://trac.sagemath.org/sage_trac/ticket/11080#comment:314 and 22 # the subsequent few comments. 23 export CPPFLAGS="I$SAGE_LOCAL/include D_XOPEN_SOURCE=500 $CPPFLAGS" 21 24 export LDFLAGS="L$SAGE_LOCAL/lib $LDFLAGS" 22 25 23 if [ n $SAGE64]; then26 if [ $SAGE64 = "yes" ]; then 24 27 echo "Building with extra 64bit flags for MacOS X and Open Solaris." 25 28 if [ z $CFLAG64 ]; then 26 29 CFLAG64=m64
comment:12 Changed 9 years ago by
On my Mac (OS X 10.7), I can't get worksheets to actually evaluate anything. With Chrome, Firefox, and Safari, I see an evaluate button, but clicking on it does nothing. Hitting 'shiftenter' either does nothing (Firefox) or gives me a new line in the current cell (Chrome and Safari), and does not evaluate anything. Hitting 'Save & quit' does nothing (Chrome and Safari) or actually quits the current worksheet (Firefox).
I think I see some of the same behavior with 0.9.0, but not as severe: it works in Firefox, but not in Chrome or Safari. I'm not sure about that, though; I'm not sure my 0.9.0 install was clean, or whether I corrupted it with 0.9.1 related things.
Does it matter that there is no directory for this version of sagenb in SAGE_LOCAL/lib/python/sitepackages/
? After installing 0.9.0 and then 0.9.1, I see
drwxrxrx 4 palmieri admin 136 Jun 19 11:13 sagenb0.8.29py2.7.egg drwxrxrx 4 palmieri admin 136 Jun 21 16:47 sagenb0.9.0py2.7.egg rwrr 1 palmieri admin 26 Jun 21 16:59 sagenb.egglink
comment:13 Changed 9 years ago by
comment:14 Changed 9 years ago by
A hard refresh helps to get 0.9.0 to work, but not 0.9.1.
By the way, when the notebook is running, how can I tell which version is running? I would suggest having a variable, or displaying it somewhere when the notebook opens.
comment:15 Changed 9 years ago by
 Description modified (diff)
 Status changed from needs_review to needs_work
 Summary changed from Upgrade sagenb to 0.9.1 to Upgrade sagenb to 0.10
 Work issues set to fix js typo, make new spkg
Um, wow. Silly typo in this commit. I'll fix this, and actually I think I'm going to call this 0.10. Our version numbers are moving too slowly. Adding mathjax is a lot more substantial of a change than a bump to the patch level should cause a user to expect.
comment:16 Changed 9 years ago by
 Summary changed from Upgrade sagenb to 0.10 to Upgrade sagenb to 0.10.0
comment:17 Changed 9 years ago by
 Description modified (diff)
 Report Upstream changed from Fixed upstream, but not in a stable release. to N/A
 Status changed from needs_work to needs_review
 Work issues fix js typo, make new spkg deleted
OK, new SPKG is up.
By the way, when the notebook is running, how can I tell which version is running? I would suggest having a variable, or displaying it somewhere when the notebook opens.
sagenb.misc.misc.SAGENB_VERSION
should tell you that, but it's sort of a hack. I probably could have changed that in the packaging rewrite...
comment:18 Changed 9 years ago by
Okay, now a hard refresh is getting everything to work, on all three browsers. Now, is there any way to set it up to avoid the hard refresh? Otherwise users may be frustrated when they first switch to the new notebook.
comment:19 Changed 9 years ago by
 Description modified (diff)
I've attached a patch to put "webassets" into the .hgignore file.
See this comment on github pull request 64 to confirm that #12299 will be in 0.9.1.