Opened 10 years ago
Closed 10 years ago
#10860 closed defect (fixed)
R package documentation not accessible from notebook
| Reported by: | aginiewicz | Owned by: | jason, mpatel, was |
|---|---|---|---|
| Priority: | minor | Milestone: | sage-4.7.1 |
| Component: | notebook | Keywords: | unicode, notebook, docstring, R, sd31 |
| Cc: | kcrisman, jason, mpatel, timdumol | Merged in: | sage-4.7.1.alpha4 |
| Authors: | Andrzej Giniewicz | Reviewers: | Karl-Dieter Crisman |
| Report Upstream: | N/A | Work issues: | |
| Branch: | Commit: | ||
| Dependencies: | Stopgaps: |
Status badges
Description (last modified by )
The documentation of package R is not accessible from notebook, while it works from command line.
sage: r.lm?
<html><!--notruncate-->
Traceback (most recent call last):
File "<stdin>", line 1, in <module>
File "_sage_input_3.py", line 10, in <module>
exec compile(u'print _support_.docstring("r.lm", globals(),
system="sage")' + '\n', '', 'single')
File "", line 1, in <module>
File "/opt/sage/devel/sagenb/sagenb/misc/support.py", line 263, in docstring
return html_markup(s)
File "/opt/sage/devel/sagenb/sagenb/misc/support.py", line 288, in html_markup
return '<div class="docstring">' + preamble + '<pre>' + s + '</pre></div>'
UnicodeDecodeError: 'ascii' codec can't decode byte 0xe2 in position
116: ordinal not in range(128)
</html>
See this sage-support thread.
Apply 10860.patch and trac_10860-review.patch to sagenb.
Attachments (2)
Change History (11)
Changed 10 years ago by
comment:1 Changed 10 years ago by
- Status changed from new to needs_review
Added simple fix for the issue mentioned. With the patch R documentation works again. I also checked documentation for plot. Also, all tests on 4.6.1 passed.
comment:2 Changed 10 years ago by
- Cc kcrisman added
comment:3 Changed 10 years ago by
- Description modified (diff)
comment:4 Changed 10 years ago by
- Cc jason mpatel timdumol added
- Reviewers set to Karl-Dieter Crisman
- Status changed from needs_review to needs_info
This works. I'm not quite sure why - is all R doc in UTF-8 now? maybe this happened with the last R upgrade - but it does.
Positive review if we can't think of a way to doctest this. Is this something we can doctest using EMBEDDED_MODE? cc:ing in a few people who might know the answer to that question.
comment:5 Changed 10 years ago by
- Status changed from needs_info to needs_review
Apparently it is.
sage: a = r.lm sage: b = a._sage_doc_() sage: b[:150] 'lm package:stats R Documentation\n\n_\x08F_\x08i_\x08t_\x08t_\x08i_\x08n_\x08g _\x08L_\x08i_\x08n_\x08e_\x08a_\x08r _\x08M_\x08o_\x08d_\x08e_\x08l_\x08s\n\n_\x08D_\x08e_\x08s_\x08c_\x08r_\x08'
I've added a doctest for this. There are warnings, but they are ok - I think they are just because of the R formatting. Warnings of this type do not affect passing doctests.
comment:6 Changed 10 years ago by
- Keywords sd31 added
- Status changed from needs_review to positive_review
comment:7 Changed 10 years ago by
- Description modified (diff)
Apply 10860.patch and trac_10860-review.patch.
comment:8 Changed 10 years ago by
To the notebook repository, of course.
comment:9 Changed 10 years ago by
- Description modified (diff)
- Merged in set to sage-4.7.1.alpha4
- Resolution set to fixed
- Status changed from positive_review to closed
decode string before converting to html