Ticket #27272: iml-1.0.4p1.p2.log

File iml-1.0.4p1.p2.log, 43.7 KB (added by dimpase, 3 years ago)

1.0.4 log - configure is run twice (sic!)

Line 
1Found local metadata for iml-1.0.4p1.p2
2Using cached file /home/dimpase/sage/upstream/iml-1.0.4p1.tar.bz2
3iml-1.0.4p1.p2
4====================================================
5Setting up build directory for iml-1.0.4p1.p2
6Finished extraction
7Applying patches from ../patches...
8Applying ../patches/autocon.patch
9patching file INSTALL
10patching file Makefile.in
11patching file aclocal.m4
12patching file compile
13patching file config-h.in
14patching file config.guess
15patching file config.sub
16patching file config/Makefile.in
17patching file config/libtool.m4
18patching file config/ltoptions.m4
19patching file config/ltsugar.m4
20patching file config/ltversion.m4
21patching file config/lt~obsolete.m4
22patching file configure
23patching file depcomp
24patching file doc/Makefile.in
25patching file examples/Makefile.in
26patching file install-sh
27patching file ltmain.sh
28patching file missing
29patching file src/Makefile.in
30patching file test-driver
31patching file tests/Makefile.in
32Applying ../patches/examples.patch
33patching file examples/exam-nullspace.c
34patching file examples/exam-nullspace2.c
35****************************************************
36Host system:
37Linux linux 4.9.0-8-amd64 #1 SMP Debian 4.9.130-2 (2018-10-27) x86_64 GNU/Linux
38****************************************************
39C compiler: gcc
40C compiler version:
41Using built-in specs.
42COLLECT_GCC=gcc
43COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/6/lto-wrapper
44Target: x86_64-linux-gnu
45Configured with: ../src/configure -v --with-pkgversion='Debian 6.3.0-18+deb9u1' --with-bugurl=file:///usr/share/doc/gcc-6/README.Bugs --enable-languages=c,ada,c++,java,go,d,fortran,objc,obj-c++ --prefix=/usr --program-suffix=-6 --program-prefix=x86_64-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --with-sysroot=/ --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-vtable-verify --enable-libmpx --enable-plugin --enable-default-pie --with-system-zlib --disable-browser-plugin --enable-java-awt=gtk --enable-gtk-cairo --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-6-amd64/jre --enable-java-home --with-jvm-root-dir=/usr/lib/jvm/java-1.5.0-gcj-6-amd64 --with-jvm-jar-dir=/usr/lib/jvm-exports/java-1.5.0-gcj-6-amd64 --with-arch-directory=amd64 --with-ecj-jar=/usr/share/java/eclipse-ecj.jar --with-target-system-zlib --enable-objc-gc=auto --enable-multiarch --with-arch-32=i686 --with-abi=m64 --with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu
46Thread model: posix
47gcc version 6.3.0 20170516 (Debian 6.3.0-18+deb9u1)
48****************************************************
49Package 'iml' is currently not installed
50No legacy uninstaller found for 'iml'; nothing to do
51Configuring iml-1.0.4p1.p2
52configure: WARNING: you should use --build, --host, --target
53checking for a BSD-compatible install... /usr/bin/install -c
54checking whether build environment is sane... yes
55checking for a thread-safe mkdir -p... /bin/mkdir -p
56checking for gawk... no
57checking for mawk... mawk
58checking whether make sets $(MAKE)... yes
59checking whether make supports nested variables... yes
60checking for gcc... gcc
61checking whether the C compiler works... yes
62checking for C compiler default output file name... a.out
63checking for suffix of executables...
64checking whether we are cross compiling... no
65checking for suffix of object files... o
66checking whether we are using the GNU C compiler... yes
67checking whether gcc accepts -g... yes
68checking for gcc option to accept ISO C89... none needed
69checking whether gcc understands -c and -o together... yes
70checking for style of include used by make... GNU
71checking dependency style of gcc... gcc3
72checking how to run the C preprocessor... gcc -E
73checking for grep that handles long lines and -e... /bin/grep
74checking for egrep... /bin/grep -E
75checking for ANSI C header files... yes
76checking build system type... x86_64-pc-linux-gnu
77checking host system type... x86_64-pc-linux-gnu
78checking how to print strings... printf
79checking for a sed that does not truncate output... /bin/sed
80checking for fgrep... /bin/grep -F
81checking for ld used by gcc... ld
82checking if the linker (ld) is GNU ld... yes
83checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
84checking the name lister (/usr/bin/nm -B) interface... BSD nm
85checking whether ln -s works... yes
86checking the maximum length of command line arguments... 1572864
87checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop
88checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop
89checking for ld option to reload object files... -r
90checking for objdump... objdump
91checking how to recognize dependent libraries... pass_all
92checking for dlltool... no
93checking how to associate runtime and link libraries... printf %s\n
94checking for archiver @FILE support... @
95checking for strip... strip
96checking for ranlib... ranlib
97checking command to parse /usr/bin/nm -B output from gcc object... ok
98checking for sysroot... no
99checking for a working dd... /bin/dd
100checking how to truncate binary pipes... /bin/dd bs=4096 count=1
101checking for mt... mt
102checking if mt is a manifest tool... no
103checking for sys/types.h... yes
104checking for sys/stat.h... yes
105checking for stdlib.h... yes
106checking for string.h... yes
107checking for memory.h... yes
108checking for strings.h... yes
109checking for inttypes.h... yes
110checking for stdint.h... yes
111checking for unistd.h... yes
112checking for dlfcn.h... yes
113checking for objdir... .libs
114checking if gcc supports -fno-rtti -fno-exceptions... no
115checking for gcc option to produce PIC... -fPIC -DPIC
116checking if gcc PIC flag -fPIC -DPIC works... yes
117checking if gcc static flag -static works... yes
118checking if gcc supports -c -o file.o... yes
119checking if gcc supports -c -o file.o... (cached) yes
120checking whether the gcc linker (ld -m elf_x86_64) supports shared libraries... yes
121checking whether -lc should be explicitly linked in... no
122checking dynamic linker characteristics... GNU/Linux ld.so
123checking how to hardcode library paths into programs... immediate
124checking whether stripping libraries is possible... yes
125checking if libtool supports shared libraries... yes
126checking whether to build shared libraries... yes
127checking whether to build static libraries... yes
128checking for stdlib.h... (cached) yes
129checking time.h usability... yes
130checking time.h presence... yes
131checking for time.h... yes
132checking math.h usability... yes
133checking math.h presence... yes
134checking for math.h... yes
135checking for an ANSI C-conforming const... yes
136checking for size_t... yes
137checking for stdlib.h... (cached) yes
138checking for GNU libc compatible realloc... yes
139checking for bzero... yes
140checking for calloc... yes
141checking for floor... yes
142Default checking path = /home/dimpase/sage/local /usr /usr/local
143checking for CBLAS... found
144checking that generated files are newer than configure... done
145configure: creating ./config.status
146config.status: creating Makefile
147config.status: creating config/Makefile
148config.status: creating src/Makefile
149config.status: creating doc/Makefile
150config.status: creating examples/Makefile
151config.status: creating tests/Makefile
152config.status: creating config.h
153config.status: executing depfiles commands
154config.status: executing libtool commands
155------------------------------------------------------------------------
156Configuration:
157
158  Source code location:       .
159  Compiler:                   gcc
160  Compiler flags:             -I. -O3 -g
161  Linker flags:               -L/home/dimpase/sage/local/lib -Wl,-rpath,/home/dimpase/sage/local/lib  -lm
162  Host System Type:           x86_64-pc-linux-gnu
163  Install path:               /home/dimpase/sage/local
164
165  See config.h for further configuration information.
166------------------------------------------------------------------------
167Building iml-1.0.4p1.p2
168make[2]: Entering directory '/home/dimpase/sage/local/var/tmp/sage/build/iml-1.0.4p1.p2/src'
169CDPATH="${ZSH_VERSION+.}:" && cd . && /bin/bash /home/dimpase/sage/local/var/tmp/sage/build/iml-1.0.4p1.p2/src/missing aclocal-1.15 -I config
170CDPATH="${ZSH_VERSION+.}:" && cd . && /bin/bash /home/dimpase/sage/local/var/tmp/sage/build/iml-1.0.4p1.p2/src/missing autoconf
171 cd . && /bin/bash /home/dimpase/sage/local/var/tmp/sage/build/iml-1.0.4p1.p2/src/missing automake-1.15 --gnu
172/bin/bash ./config.status --recheck
173running CONFIG_SHELL=/bin/bash /bin/bash ./configure --prefix=/home/dimpase/sage/local --libdir=/home/dimpase/sage/local/lib --enable-shared --with-default=/home/dimpase/sage/local --with-cblas=-L/home/dimpase/sage/local/lib -lopenblas --with-cblas-include=-I/home/dimpase/sage/local/include  build_alias= host_alias= target_alias= CC=gcc CFLAGS=-O3 -g  LDFLAGS=-L/home/dimpase/sage/local/lib -Wl,-rpath,/home/dimpase/sage/local/lib  --no-create --no-recursion
174configure: WARNING: you should use --build, --host, --target
175checking for a BSD-compatible install... /usr/bin/install -c
176checking whether build environment is sane... yes
177checking for a thread-safe mkdir -p... /bin/mkdir -p
178checking for gawk... no
179checking for mawk... mawk
180checking whether make sets $(MAKE)... yes
181checking whether make supports nested variables... yes
182checking for gcc... gcc
183checking whether the C compiler works... yes
184checking for C compiler default output file name... a.out
185checking for suffix of executables...
186checking whether we are cross compiling... no
187checking for suffix of object files... o
188checking whether we are using the GNU C compiler... yes
189checking whether gcc accepts -g... yes
190checking for gcc option to accept ISO C89... none needed
191checking whether gcc understands -c and -o together... yes
192checking for style of include used by make... GNU
193checking dependency style of gcc... gcc3
194checking how to run the C preprocessor... gcc -E
195checking for grep that handles long lines and -e... /bin/grep
196checking for egrep... /bin/grep -E
197checking for ANSI C header files... yes
198checking build system type... x86_64-pc-linux-gnu
199checking host system type... x86_64-pc-linux-gnu
200checking how to print strings... printf
201checking for a sed that does not truncate output... /bin/sed
202checking for fgrep... /bin/grep -F
203checking for ld used by gcc... ld -m elf_x86_64
204checking if the linker (ld -m elf_x86_64) is GNU ld... yes
205checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
206checking the name lister (/usr/bin/nm -B) interface... BSD nm
207checking whether ln -s works... yes
208checking the maximum length of command line arguments... 1572864
209checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop
210checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop
211checking for ld -m elf_x86_64 option to reload object files... -r
212checking for objdump... objdump
213checking how to recognize dependent libraries... pass_all
214checking for dlltool... no
215checking how to associate runtime and link libraries... printf %s\n
216checking for archiver @FILE support... @
217checking for strip... strip
218checking for ranlib... ranlib
219checking command to parse /usr/bin/nm -B output from gcc object... ok
220checking for sysroot... no
221checking for a working dd... /bin/dd
222checking how to truncate binary pipes... /bin/dd bs=4096 count=1
223checking for mt... mt
224checking if mt is a manifest tool... no
225checking for sys/types.h... yes
226checking for sys/stat.h... yes
227checking for stdlib.h... yes
228checking for string.h... yes
229checking for memory.h... yes
230checking for strings.h... yes
231checking for inttypes.h... yes
232checking for stdint.h... yes
233checking for unistd.h... yes
234checking for dlfcn.h... yes
235checking for objdir... .libs
236checking if gcc supports -fno-rtti -fno-exceptions... no
237checking for gcc option to produce PIC... -fPIC -DPIC
238checking if gcc PIC flag -fPIC -DPIC works... yes
239checking if gcc static flag -static works... yes
240checking if gcc supports -c -o file.o... yes
241checking if gcc supports -c -o file.o... (cached) yes
242checking whether the gcc linker (ld -m elf_x86_64 -m elf_x86_64) supports shared libraries... yes
243checking whether -lc should be explicitly linked in... no
244checking dynamic linker characteristics... GNU/Linux ld.so
245checking how to hardcode library paths into programs... immediate
246checking whether stripping libraries is possible... yes
247checking if libtool supports shared libraries... yes
248checking whether to build shared libraries... yes
249checking whether to build static libraries... yes
250checking for stdlib.h... (cached) yes
251checking time.h usability... yes
252checking time.h presence... yes
253checking for time.h... yes
254checking math.h usability... yes
255checking math.h presence... yes
256checking for math.h... yes
257checking for an ANSI C-conforming const... yes
258checking for size_t... yes
259checking for stdlib.h... (cached) yes
260checking for GNU libc compatible realloc... yes
261checking for bzero... yes
262checking for calloc... yes
263checking for floor... yes
264Default checking path = /home/dimpase/sage/local /usr /usr/local
265checking for GMP >= 3.1.1... not found
266configure: error: GMP not found!
267GMP version 3.1.1 or greater is required for this library to compile.
268Please make sure GMP is installed and specify the header and libraries
269location with the options --with-gmp-include=<path> and --with-gmp-lib=<path>
270respectively when running configure.
271
272Makefile:374: recipe for target 'config.status' failed
273make[2]: *** [config.status] Error 1
274make[2]: Leaving directory '/home/dimpase/sage/local/var/tmp/sage/build/iml-1.0.4p1.p2/src'
275********************************************************************************
276Error building iml-1.0.4p1.p2
277********************************************************************************
278
279real    0m11.031s
280user    0m7.208s
281sys     0m1.248s
282************************************************************************
283Error installing package iml-1.0.4p1.p2
284************************************************************************
285Please email sage-devel (http://groups.google.com/group/sage-devel)
286explaining the problem and including the log file
287  /home/dimpase/sage/logs/pkgs/iml-1.0.4p1.p2.log
288Describe your computer, operating system, etc.
289If you want to try to fix the problem yourself, *don't* just cd to
290/home/dimpase/sage/local/var/tmp/sage/build/iml-1.0.4p1.p2 and type 'make' or whatever is appropriate.
291Instead, the following commands setup all environment variables
292correctly and load a subshell for you to debug the error:
293  (cd '/home/dimpase/sage/local/var/tmp/sage/build/iml-1.0.4p1.p2' && '/home/dimpase/sage/sage' --sh)
294When you are done debugging, you can type "exit" to leave the subshell.
295************************************************************************
296Found local metadata for iml-1.0.4p1.p2
297Using cached file /home/dimpase/sage/upstream/iml-1.0.4p1.tar.bz2
298iml-1.0.4p1.p2
299====================================================
300Setting up build directory for iml-1.0.4p1.p2
301Finished extraction
302Applying patches from ../patches...
303Applying ../patches/autocon.patch
304patching file INSTALL
305patching file Makefile.in
306patching file aclocal.m4
307patching file compile
308patching file config-h.in
309patching file config.guess
310patching file config.sub
311patching file config/Makefile.in
312patching file config/libtool.m4
313patching file config/ltoptions.m4
314patching file config/ltsugar.m4
315patching file config/ltversion.m4
316patching file config/lt~obsolete.m4
317patching file configure
318patching file depcomp
319patching file doc/Makefile.in
320patching file examples/Makefile.in
321patching file install-sh
322patching file ltmain.sh
323patching file missing
324patching file src/Makefile.in
325patching file test-driver
326patching file tests/Makefile.in
327Applying ../patches/examples.patch
328patching file examples/exam-nullspace.c
329patching file examples/exam-nullspace2.c
330****************************************************
331Host system:
332Linux linux 4.9.0-8-amd64 #1 SMP Debian 4.9.130-2 (2018-10-27) x86_64 GNU/Linux
333****************************************************
334C compiler: gcc
335C compiler version:
336Using built-in specs.
337COLLECT_GCC=gcc
338COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/6/lto-wrapper
339Target: x86_64-linux-gnu
340Configured with: ../src/configure -v --with-pkgversion='Debian 6.3.0-18+deb9u1' --with-bugurl=file:///usr/share/doc/gcc-6/README.Bugs --enable-languages=c,ada,c++,java,go,d,fortran,objc,obj-c++ --prefix=/usr --program-suffix=-6 --program-prefix=x86_64-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --with-sysroot=/ --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-vtable-verify --enable-libmpx --enable-plugin --enable-default-pie --with-system-zlib --disable-browser-plugin --enable-java-awt=gtk --enable-gtk-cairo --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-6-amd64/jre --enable-java-home --with-jvm-root-dir=/usr/lib/jvm/java-1.5.0-gcj-6-amd64 --with-jvm-jar-dir=/usr/lib/jvm-exports/java-1.5.0-gcj-6-amd64 --with-arch-directory=amd64 --with-ecj-jar=/usr/share/java/eclipse-ecj.jar --with-target-system-zlib --enable-objc-gc=auto --enable-multiarch --with-arch-32=i686 --with-abi=m64 --with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu
341Thread model: posix
342gcc version 6.3.0 20170516 (Debian 6.3.0-18+deb9u1)
343****************************************************
344Package 'iml' is currently not installed
345No legacy uninstaller found for 'iml'; nothing to do
346Configuring iml-1.0.4p1.p2
347configure: WARNING: you should use --build, --host, --target
348checking for a BSD-compatible install... /usr/bin/install -c
349checking whether build environment is sane... yes
350checking for a thread-safe mkdir -p... /bin/mkdir -p
351checking for gawk... no
352checking for mawk... mawk
353checking whether make sets $(MAKE)... yes
354checking whether make supports nested variables... yes
355checking for gcc... gcc
356checking whether the C compiler works... yes
357checking for C compiler default output file name... a.out
358checking for suffix of executables...
359checking whether we are cross compiling... no
360checking for suffix of object files... o
361checking whether we are using the GNU C compiler... yes
362checking whether gcc accepts -g... yes
363checking for gcc option to accept ISO C89... none needed
364checking whether gcc understands -c and -o together... yes
365checking for style of include used by make... GNU
366checking dependency style of gcc... gcc3
367checking how to run the C preprocessor... gcc -E
368checking for grep that handles long lines and -e... /bin/grep
369checking for egrep... /bin/grep -E
370checking for ANSI C header files... yes
371checking build system type... x86_64-pc-linux-gnu
372checking host system type... x86_64-pc-linux-gnu
373checking how to print strings... printf
374checking for a sed that does not truncate output... /bin/sed
375checking for fgrep... /bin/grep -F
376checking for ld used by gcc... ld
377checking if the linker (ld) is GNU ld... yes
378checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
379checking the name lister (/usr/bin/nm -B) interface... BSD nm
380checking whether ln -s works... yes
381checking the maximum length of command line arguments... 1572864
382checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop
383checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop
384checking for ld option to reload object files... -r
385checking for objdump... objdump
386checking how to recognize dependent libraries... pass_all
387checking for dlltool... no
388checking how to associate runtime and link libraries... printf %s\n
389checking for archiver @FILE support... @
390checking for strip... strip
391checking for ranlib... ranlib
392checking command to parse /usr/bin/nm -B output from gcc object... ok
393checking for sysroot... no
394checking for a working dd... /bin/dd
395checking how to truncate binary pipes... /bin/dd bs=4096 count=1
396checking for mt... mt
397checking if mt is a manifest tool... no
398checking for sys/types.h... yes
399checking for sys/stat.h... yes
400checking for stdlib.h... yes
401checking for string.h... yes
402checking for memory.h... yes
403checking for strings.h... yes
404checking for inttypes.h... yes
405checking for stdint.h... yes
406checking for unistd.h... yes
407checking for dlfcn.h... yes
408checking for objdir... .libs
409checking if gcc supports -fno-rtti -fno-exceptions... no
410checking for gcc option to produce PIC... -fPIC -DPIC
411checking if gcc PIC flag -fPIC -DPIC works... yes
412checking if gcc static flag -static works... yes
413checking if gcc supports -c -o file.o... yes
414checking if gcc supports -c -o file.o... (cached) yes
415checking whether the gcc linker (ld -m elf_x86_64) supports shared libraries... yes
416checking whether -lc should be explicitly linked in... no
417checking dynamic linker characteristics... GNU/Linux ld.so
418checking how to hardcode library paths into programs... immediate
419checking whether stripping libraries is possible... yes
420checking if libtool supports shared libraries... yes
421checking whether to build shared libraries... yes
422checking whether to build static libraries... yes
423checking for stdlib.h... (cached) yes
424checking time.h usability... yes
425checking time.h presence... yes
426checking for time.h... yes
427checking math.h usability... yes
428checking math.h presence... yes
429checking for math.h... yes
430checking for an ANSI C-conforming const... yes
431checking for size_t... yes
432checking for stdlib.h... (cached) yes
433checking for GNU libc compatible realloc... yes
434checking for bzero... yes
435checking for calloc... yes
436checking for floor... yes
437Default checking path = /home/dimpase/sage/local /usr /usr/local
438checking for CBLAS... found
439checking that generated files are newer than configure... done
440configure: creating ./config.status
441config.status: creating Makefile
442config.status: creating config/Makefile
443config.status: creating src/Makefile
444config.status: creating doc/Makefile
445config.status: creating examples/Makefile
446config.status: creating tests/Makefile
447config.status: creating config.h
448config.status: executing depfiles commands
449config.status: executing libtool commands
450------------------------------------------------------------------------
451Configuration:
452
453  Source code location:       .
454  Compiler:                   gcc
455  Compiler flags:             -I. -O3 -g
456  Linker flags:               -L/home/dimpase/sage/local/lib -Wl,-rpath,/home/dimpase/sage/local/lib  -lm
457  Host System Type:           x86_64-pc-linux-gnu
458  Install path:               /home/dimpase/sage/local
459
460  See config.h for further configuration information.
461------------------------------------------------------------------------
462Building iml-1.0.4p1.p2
463make[2]: Entering directory '/home/dimpase/sage/local/var/tmp/sage/build/iml-1.0.4p1.p2/src'
464CDPATH="${ZSH_VERSION+.}:" && cd . && /bin/bash /home/dimpase/sage/local/var/tmp/sage/build/iml-1.0.4p1.p2/src/missing aclocal-1.15 -I config
465CDPATH="${ZSH_VERSION+.}:" && cd . && /bin/bash /home/dimpase/sage/local/var/tmp/sage/build/iml-1.0.4p1.p2/src/missing autoconf
466 cd . && /bin/bash /home/dimpase/sage/local/var/tmp/sage/build/iml-1.0.4p1.p2/src/missing automake-1.15 --gnu
467/bin/bash ./config.status --recheck
468running CONFIG_SHELL=/bin/bash /bin/bash ./configure --prefix=/home/dimpase/sage/local --libdir=/home/dimpase/sage/local/lib --enable-shared --with-default=/home/dimpase/sage/local --with-cblas=-L/home/dimpase/sage/local/lib -lopenblas --with-cblas-include=-I/home/dimpase/sage/local/include  build_alias= host_alias= target_alias= CC=gcc CFLAGS=-O3 -g  LDFLAGS=-L/home/dimpase/sage/local/lib -Wl,-rpath,/home/dimpase/sage/local/lib  --no-create --no-recursion
469configure: WARNING: you should use --build, --host, --target
470checking for a BSD-compatible install... /usr/bin/install -c
471checking whether build environment is sane... yes
472checking for a thread-safe mkdir -p... /bin/mkdir -p
473checking for gawk... no
474checking for mawk... mawk
475checking whether make sets $(MAKE)... yes
476checking whether make supports nested variables... yes
477checking for gcc... gcc
478checking whether the C compiler works... yes
479checking for C compiler default output file name... a.out
480checking for suffix of executables...
481checking whether we are cross compiling... no
482checking for suffix of object files... o
483checking whether we are using the GNU C compiler... yes
484checking whether gcc accepts -g... yes
485checking for gcc option to accept ISO C89... none needed
486checking whether gcc understands -c and -o together... yes
487checking for style of include used by make... GNU
488checking dependency style of gcc... gcc3
489checking how to run the C preprocessor... gcc -E
490checking for grep that handles long lines and -e... /bin/grep
491checking for egrep... /bin/grep -E
492checking for ANSI C header files... yes
493checking build system type... x86_64-pc-linux-gnu
494checking host system type... x86_64-pc-linux-gnu
495checking how to print strings... printf
496checking for a sed that does not truncate output... /bin/sed
497checking for fgrep... /bin/grep -F
498checking for ld used by gcc... ld -m elf_x86_64
499checking if the linker (ld -m elf_x86_64) is GNU ld... yes
500checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
501checking the name lister (/usr/bin/nm -B) interface... BSD nm
502checking whether ln -s works... yes
503checking the maximum length of command line arguments... 1572864
504checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop
505checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop
506checking for ld -m elf_x86_64 option to reload object files... -r
507checking for objdump... objdump
508checking how to recognize dependent libraries... pass_all
509checking for dlltool... no
510checking how to associate runtime and link libraries... printf %s\n
511checking for archiver @FILE support... @
512checking for strip... strip
513checking for ranlib... ranlib
514checking command to parse /usr/bin/nm -B output from gcc object... ok
515checking for sysroot... no
516checking for a working dd... /bin/dd
517checking how to truncate binary pipes... /bin/dd bs=4096 count=1
518checking for mt... mt
519checking if mt is a manifest tool... no
520checking for sys/types.h... yes
521checking for sys/stat.h... yes
522checking for stdlib.h... yes
523checking for string.h... yes
524checking for memory.h... yes
525checking for strings.h... yes
526checking for inttypes.h... yes
527checking for stdint.h... yes
528checking for unistd.h... yes
529checking for dlfcn.h... yes
530checking for objdir... .libs
531checking if gcc supports -fno-rtti -fno-exceptions... no
532checking for gcc option to produce PIC... -fPIC -DPIC
533checking if gcc PIC flag -fPIC -DPIC works... yes
534checking if gcc static flag -static works... yes
535checking if gcc supports -c -o file.o... yes
536checking if gcc supports -c -o file.o... (cached) yes
537checking whether the gcc linker (ld -m elf_x86_64 -m elf_x86_64) supports shared libraries... yes
538checking whether -lc should be explicitly linked in... no
539checking dynamic linker characteristics... GNU/Linux ld.so
540checking how to hardcode library paths into programs... immediate
541checking whether stripping libraries is possible... yes
542checking if libtool supports shared libraries... yes
543checking whether to build shared libraries... yes
544checking whether to build static libraries... yes
545checking for stdlib.h... (cached) yes
546checking time.h usability... yes
547checking time.h presence... yes
548checking for time.h... yes
549checking math.h usability... yes
550checking math.h presence... yes
551checking for math.h... yes
552checking for an ANSI C-conforming const... yes
553checking for size_t... yes
554checking for stdlib.h... (cached) yes
555checking for GNU libc compatible realloc... yes
556checking for bzero... yes
557checking for calloc... yes
558checking for floor... yes
559Default checking path = /home/dimpase/sage/local /usr /usr/local
560checking for GMP >= 3.1.1... not found
561configure: error: GMP not found!
562GMP version 3.1.1 or greater is required for this library to compile.
563Please make sure GMP is installed and specify the header and libraries
564location with the options --with-gmp-include=<path> and --with-gmp-lib=<path>
565respectively when running configure.
566
567Makefile:374: recipe for target 'config.status' failed
568make[2]: *** [config.status] Error 1
569make[2]: Leaving directory '/home/dimpase/sage/local/var/tmp/sage/build/iml-1.0.4p1.p2/src'
570********************************************************************************
571Error building iml-1.0.4p1.p2
572********************************************************************************
573
574real    0m10.879s
575user    0m7.124s
576sys     0m1.208s
577************************************************************************
578Error installing package iml-1.0.4p1.p2
579************************************************************************
580Please email sage-devel (http://groups.google.com/group/sage-devel)
581explaining the problem and including the log file
582  /home/dimpase/sage/logs/pkgs/iml-1.0.4p1.p2.log
583Describe your computer, operating system, etc.
584If you want to try to fix the problem yourself, *don't* just cd to
585/home/dimpase/sage/local/var/tmp/sage/build/iml-1.0.4p1.p2 and type 'make' or whatever is appropriate.
586Instead, the following commands setup all environment variables
587correctly and load a subshell for you to debug the error:
588  (cd '/home/dimpase/sage/local/var/tmp/sage/build/iml-1.0.4p1.p2' && '/home/dimpase/sage/sage' --sh)
589When you are done debugging, you can type "exit" to leave the subshell.
590************************************************************************
591Found local metadata for iml-1.0.4p1.p2
592Using cached file /home/dimpase/sage/upstream/iml-1.0.4p1.tar.bz2
593iml-1.0.4p1.p2
594====================================================
595Setting up build directory for iml-1.0.4p1.p2
596Finished extraction
597Applying patches from ../patches...
598Applying ../patches/autocon.patch
599patching file INSTALL
600patching file Makefile.am
601patching file Makefile.in
602patching file aclocal.m4
603patching file compile
604patching file config-h.in
605patching file config.guess
606patching file config.sub
607patching file config/Makefile.in
608patching file config/libtool.m4
609patching file config/ltoptions.m4
610patching file config/ltsugar.m4
611patching file config/ltversion.m4
612patching file config/lt~obsolete.m4
613patching file configure
614patching file depcomp
615patching file doc/Makefile.in
616patching file examples/Makefile.in
617patching file install-sh
618patching file ltmain.sh
619patching file missing
620patching file src/Makefile.in
621patching file test-driver
622patching file tests/Makefile.in
623Applying ../patches/examples.patch
624patching file examples/exam-nullspace.c
625patching file examples/exam-nullspace2.c
626****************************************************
627Host system:
628Linux linux 4.9.0-8-amd64 #1 SMP Debian 4.9.130-2 (2018-10-27) x86_64 GNU/Linux
629****************************************************
630C compiler: gcc
631C compiler version:
632Using built-in specs.
633COLLECT_GCC=gcc
634COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/6/lto-wrapper
635Target: x86_64-linux-gnu
636Configured with: ../src/configure -v --with-pkgversion='Debian 6.3.0-18+deb9u1' --with-bugurl=file:///usr/share/doc/gcc-6/README.Bugs --enable-languages=c,ada,c++,java,go,d,fortran,objc,obj-c++ --prefix=/usr --program-suffix=-6 --program-prefix=x86_64-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --with-sysroot=/ --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-vtable-verify --enable-libmpx --enable-plugin --enable-default-pie --with-system-zlib --disable-browser-plugin --enable-java-awt=gtk --enable-gtk-cairo --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-6-amd64/jre --enable-java-home --with-jvm-root-dir=/usr/lib/jvm/java-1.5.0-gcj-6-amd64 --with-jvm-jar-dir=/usr/lib/jvm-exports/java-1.5.0-gcj-6-amd64 --with-arch-directory=amd64 --with-ecj-jar=/usr/share/java/eclipse-ecj.jar --with-target-system-zlib --enable-objc-gc=auto --enable-multiarch --with-arch-32=i686 --with-abi=m64 --with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu
637Thread model: posix
638gcc version 6.3.0 20170516 (Debian 6.3.0-18+deb9u1)
639****************************************************
640Package 'iml' is currently not installed
641No legacy uninstaller found for 'iml'; nothing to do
642Configuring iml-1.0.4p1.p2
643configure: WARNING: you should use --build, --host, --target
644checking for a BSD-compatible install... /usr/bin/install -c
645checking whether build environment is sane... yes
646checking for a thread-safe mkdir -p... /bin/mkdir -p
647checking for gawk... no
648checking for mawk... mawk
649checking whether make sets $(MAKE)... yes
650checking whether make supports nested variables... yes
651checking for gcc... gcc
652checking whether the C compiler works... yes
653checking for C compiler default output file name... a.out
654checking for suffix of executables...
655checking whether we are cross compiling... no
656checking for suffix of object files... o
657checking whether we are using the GNU C compiler... yes
658checking whether gcc accepts -g... yes
659checking for gcc option to accept ISO C89... none needed
660checking whether gcc understands -c and -o together... yes
661checking for style of include used by make... GNU
662checking dependency style of gcc... gcc3
663checking how to run the C preprocessor... gcc -E
664checking for grep that handles long lines and -e... /bin/grep
665checking for egrep... /bin/grep -E
666checking for ANSI C header files... yes
667checking build system type... x86_64-pc-linux-gnu
668checking host system type... x86_64-pc-linux-gnu
669checking how to print strings... printf
670checking for a sed that does not truncate output... /bin/sed
671checking for fgrep... /bin/grep -F
672checking for ld used by gcc... ld
673checking if the linker (ld) is GNU ld... yes
674checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
675checking the name lister (/usr/bin/nm -B) interface... BSD nm
676checking whether ln -s works... yes
677checking the maximum length of command line arguments... 1572864
678checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop
679checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop
680checking for ld option to reload object files... -r
681checking for objdump... objdump
682checking how to recognize dependent libraries... pass_all
683checking for dlltool... no
684checking how to associate runtime and link libraries... printf %s\n
685checking for archiver @FILE support... @
686checking for strip... strip
687checking for ranlib... ranlib
688checking command to parse /usr/bin/nm -B output from gcc object... ok
689checking for sysroot... no
690checking for a working dd... /bin/dd
691checking how to truncate binary pipes... /bin/dd bs=4096 count=1
692checking for mt... mt
693checking if mt is a manifest tool... no
694checking for sys/types.h... yes
695checking for sys/stat.h... yes
696checking for stdlib.h... yes
697checking for string.h... yes
698checking for memory.h... yes
699checking for strings.h... yes
700checking for inttypes.h... yes
701checking for stdint.h... yes
702checking for unistd.h... yes
703checking for dlfcn.h... yes
704checking for objdir... .libs
705checking if gcc supports -fno-rtti -fno-exceptions... no
706checking for gcc option to produce PIC... -fPIC -DPIC
707checking if gcc PIC flag -fPIC -DPIC works... yes
708checking if gcc static flag -static works... yes
709checking if gcc supports -c -o file.o... yes
710checking if gcc supports -c -o file.o... (cached) yes
711checking whether the gcc linker (ld -m elf_x86_64) supports shared libraries... yes
712checking whether -lc should be explicitly linked in... no
713checking dynamic linker characteristics... GNU/Linux ld.so
714checking how to hardcode library paths into programs... immediate
715checking whether stripping libraries is possible... yes
716checking if libtool supports shared libraries... yes
717checking whether to build shared libraries... yes
718checking whether to build static libraries... yes
719checking for stdlib.h... (cached) yes
720checking time.h usability... yes
721checking time.h presence... yes
722checking for time.h... yes
723checking math.h usability... yes
724checking math.h presence... yes
725checking for math.h... yes
726checking for an ANSI C-conforming const... yes
727checking for size_t... yes
728checking for stdlib.h... (cached) yes
729checking for GNU libc compatible realloc... yes
730checking for bzero... yes
731checking for calloc... yes
732checking for floor... yes
733Default checking path = /home/dimpase/sage/local /usr /usr/local
734checking for CBLAS... found
735checking that generated files are newer than configure... done
736configure: creating ./config.status
737config.status: creating Makefile
738config.status: creating config/Makefile
739config.status: creating src/Makefile
740config.status: creating doc/Makefile
741config.status: creating examples/Makefile
742config.status: creating tests/Makefile
743config.status: creating config.h
744config.status: executing depfiles commands
745config.status: executing libtool commands
746------------------------------------------------------------------------
747Configuration:
748
749  Source code location:       .
750  Compiler:                   gcc
751  Compiler flags:             -I. -O3 -g
752  Linker flags:               -L/home/dimpase/sage/local/lib -Wl,-rpath,/home/dimpase/sage/local/lib  -lm
753  Host System Type:           x86_64-pc-linux-gnu
754  Install path:               /home/dimpase/sage/local
755
756  See config.h for further configuration information.
757------------------------------------------------------------------------
758Building iml-1.0.4p1.p2
759make[2]: Entering directory '/home/dimpase/sage/local/var/tmp/sage/build/iml-1.0.4p1.p2/src'
760CDPATH="${ZSH_VERSION+.}:" && cd . && /bin/bash /home/dimpase/sage/local/var/tmp/sage/build/iml-1.0.4p1.p2/src/missing aclocal-1.15 -I config
761 cd . && /bin/bash /home/dimpase/sage/local/var/tmp/sage/build/iml-1.0.4p1.p2/src/missing automake-1.15 --gnu
762CDPATH="${ZSH_VERSION+.}:" && cd . && /bin/bash /home/dimpase/sage/local/var/tmp/sage/build/iml-1.0.4p1.p2/src/missing autoconf
763/bin/bash ./config.status --recheck
764running CONFIG_SHELL=/bin/bash /bin/bash ./configure --prefix=/home/dimpase/sage/local --libdir=/home/dimpase/sage/local/lib --enable-shared --with-default=/home/dimpase/sage/local --with-cblas=-L/home/dimpase/sage/local/lib -lopenblas --with-cblas-include=-I/home/dimpase/sage/local/include  build_alias= host_alias= target_alias= CC=gcc CFLAGS=-O3 -g  LDFLAGS=-L/home/dimpase/sage/local/lib -Wl,-rpath,/home/dimpase/sage/local/lib  --no-create --no-recursion
765configure: WARNING: you should use --build, --host, --target
766checking for a BSD-compatible install... /usr/bin/install -c
767checking whether build environment is sane... yes
768checking for a thread-safe mkdir -p... /bin/mkdir -p
769checking for gawk... no
770checking for mawk... mawk
771checking whether make sets $(MAKE)... yes
772checking whether make supports nested variables... yes
773checking for gcc... gcc
774checking whether the C compiler works... yes
775checking for C compiler default output file name... a.out
776checking for suffix of executables...
777checking whether we are cross compiling... no
778checking for suffix of object files... o
779checking whether we are using the GNU C compiler... yes
780checking whether gcc accepts -g... yes
781checking for gcc option to accept ISO C89... none needed
782checking whether gcc understands -c and -o together... yes
783checking for style of include used by make... GNU
784checking dependency style of gcc... gcc3
785checking how to run the C preprocessor... gcc -E
786checking for grep that handles long lines and -e... /bin/grep
787checking for egrep... /bin/grep -E
788checking for ANSI C header files... yes
789checking build system type... x86_64-pc-linux-gnu
790checking host system type... x86_64-pc-linux-gnu
791checking how to print strings... printf
792checking for a sed that does not truncate output... /bin/sed
793checking for fgrep... /bin/grep -F
794checking for ld used by gcc... ld -m elf_x86_64
795checking if the linker (ld -m elf_x86_64) is GNU ld... yes
796checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
797checking the name lister (/usr/bin/nm -B) interface... BSD nm
798checking whether ln -s works... yes
799checking the maximum length of command line arguments... 1572864
800checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop
801checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop
802checking for ld -m elf_x86_64 option to reload object files... -r
803checking for objdump... objdump
804checking how to recognize dependent libraries... pass_all
805checking for dlltool... no
806checking how to associate runtime and link libraries... printf %s\n
807checking for archiver @FILE support... @
808checking for strip... strip
809checking for ranlib... ranlib
810checking command to parse /usr/bin/nm -B output from gcc object... ok
811checking for sysroot... no
812checking for a working dd... /bin/dd
813checking how to truncate binary pipes... /bin/dd bs=4096 count=1
814checking for mt... mt
815checking if mt is a manifest tool... no
816checking for sys/types.h... yes
817checking for sys/stat.h... yes
818checking for stdlib.h... yes
819checking for string.h... yes
820checking for memory.h... yes
821checking for strings.h... yes
822checking for inttypes.h... yes
823checking for stdint.h... yes
824checking for unistd.h... yes
825checking for dlfcn.h... yes
826checking for objdir... .libs
827checking if gcc supports -fno-rtti -fno-exceptions... no
828checking for gcc option to produce PIC... -fPIC -DPIC
829checking if gcc PIC flag -fPIC -DPIC works... yes
830checking if gcc static flag -static works... yes
831checking if gcc supports -c -o file.o... yes
832checking if gcc supports -c -o file.o... (cached) yes
833checking whether the gcc linker (ld -m elf_x86_64 -m elf_x86_64) supports shared libraries... yes
834checking whether -lc should be explicitly linked in... no
835checking dynamic linker characteristics... GNU/Linux ld.so
836checking how to hardcode library paths into programs... immediate
837checking whether stripping libraries is possible... yes
838checking if libtool supports shared libraries... yes
839checking whether to build shared libraries... yes
840checking whether to build static libraries... yes
841checking for stdlib.h... (cached) yes
842checking time.h usability... yes
843checking time.h presence... yes
844checking for time.h... yes
845checking math.h usability... yes
846checking math.h presence... yes
847checking for math.h... yes
848checking for an ANSI C-conforming const... yes
849checking for size_t... yes
850checking for stdlib.h... (cached) yes
851checking for GNU libc compatible realloc... yes
852checking for bzero... yes
853checking for calloc... yes
854checking for floor... yes
855Default checking path = /home/dimpase/sage/local /usr /usr/local
856checking for GMP >= 3.1.1... not found
857configure: error: GMP not found!
858GMP version 3.1.1 or greater is required for this library to compile.
859Please make sure GMP is installed and specify the header and libraries
860location with the options --with-gmp-include=<path> and --with-gmp-lib=<path>
861respectively when running configure.
862
863Makefile:374: recipe for target 'config.status' failed
864make[2]: *** [config.status] Error 1
865make[2]: Leaving directory '/home/dimpase/sage/local/var/tmp/sage/build/iml-1.0.4p1.p2/src'
866********************************************************************************
867Error building iml-1.0.4p1.p2
868********************************************************************************
869
870real    0m11.501s
871user    0m6.804s
872sys     0m1.316s
873************************************************************************
874Error installing package iml-1.0.4p1.p2
875************************************************************************
876Please email sage-devel (http://groups.google.com/group/sage-devel)
877explaining the problem and including the log file
878  /home/dimpase/sage/logs/pkgs/iml-1.0.4p1.p2.log
879Describe your computer, operating system, etc.
880If you want to try to fix the problem yourself, *don't* just cd to
881/home/dimpase/sage/local/var/tmp/sage/build/iml-1.0.4p1.p2 and type 'make' or whatever is appropriate.
882Instead, the following commands setup all environment variables
883correctly and load a subshell for you to debug the error:
884  (cd '/home/dimpase/sage/local/var/tmp/sage/build/iml-1.0.4p1.p2' && '/home/dimpase/sage/sage' --sh)
885When you are done debugging, you can type "exit" to leave the subshell.
886************************************************************************