Ticket #22684: pynormaliz-1.0.log

File pynormaliz-1.0.log, 6.3 KB (added by tmonteil, 5 years ago)
Line 
1Found local metadata for pynormaliz-1.0
2Attempting to download package PyNormaliz-1.0.tar.gz from mirrors
3http://mirror.switch.ch/mirror/sagemath/spkg/upstream/pynormaliz/PyNormaliz-1.0.tar.gz
4[......................................................................]
5pynormaliz-1.0
6====================================================
7Setting up build directory for pynormaliz-1.0
8Finished extraction
9No patch files found in ../patches
10****************************************************
11Host system:
12Linux tmonteil-debian-jessie-32 3.16.0-4-586 #1 Debian 3.16.39-1+deb8u2 (2017-03-07) i686 GNU/Linux
13****************************************************
14C compiler: gcc
15C compiler version:
16Using built-in specs.
17COLLECT_GCC=/opt/sagemath/sage-7.6/local/bin/gcc
18COLLECT_LTO_WRAPPER=/opt/sagemath/sage-7.6/local/libexec/gcc/i686-pc-linux-gnu/5.4.0/lto-wrapper
19Target: i686-pc-linux-gnu
20Configured with: ../src/configure --prefix=/opt/sagemath/sage-7.6/local --with-local-prefix=/opt/sagemath/sage-7.6/local --with-gmp=/opt/sagemath/sage-7.6/local --with-mpfr=/opt/sagemath/sage-7.6/local --with-mpc=/opt/sagemath/sage-7.6/local --with-system-zlib --disable-multilib --disable-nls --enable-languages=c,c++,fortran --disable-libitm 
21Thread model: posix
22gcc version 5.4.0 (GCC)
23****************************************************
24Installing package PyNormaliz using pip
25Ignoring indexes: https://pypi.python.org/simple
26Processing /opt/sagemath/sage-7.6/local/var/tmp/sage/build/pynormaliz-1.0/src
27  Running setup.py (path:/tmp/pip-_uUBOk-build/setup.py) egg_info for package from file:///opt/sagemath/sage-7.6/local/var/tmp/sage/build/pynormaliz-1.0/src
28    Running command python setup.py egg_info
29    running egg_info
30    creating pip-egg-info/PyNormaliz.egg-info
31    writing pip-egg-info/PyNormaliz.egg-info/PKG-INFO
32    writing top-level names to pip-egg-info/PyNormaliz.egg-info/top_level.txt
33    writing dependency_links to pip-egg-info/PyNormaliz.egg-info/dependency_links.txt
34    writing manifest file 'pip-egg-info/PyNormaliz.egg-info/SOURCES.txt'
35    reading manifest file 'pip-egg-info/PyNormaliz.egg-info/SOURCES.txt'
36    writing manifest file 'pip-egg-info/PyNormaliz.egg-info/SOURCES.txt'
37  Source in /tmp/pip-_uUBOk-build has version 1.0, which satisfies requirement PyNormaliz==1.0 from file:///opt/sagemath/sage-7.6/local/var/tmp/sage/build/pynormaliz-1.0/src
38Installing collected packages: PyNormaliz
39  Running setup.py install for PyNormaliz: started
40    Running command /opt/sagemath/sage-7.6/local/bin/python -u -c "import setuptools, tokenize;__file__='/tmp/pip-_uUBOk-build/setup.py';exec(compile(getattr(tokenize, 'open', open)(__file__).read().replace('\r\n', '\n'), __file__, 'exec'))" --no-user-cfg install --record /tmp/pip-U7tp6c-record/install-record.txt --single-version-externally-managed --compile
41    running install
42    running build
43    running build_ext
44    building 'PyNormaliz' extension
45    creating build
46    creating build/temp.linux-i686-2.7
47    gcc -fno-strict-aliasing -g -O2 -DNDEBUG -g -fwrapv -O3 -Wall -Wno-unused -fPIC -DPYTHON_VERSION_OLDER_THREE_FIVE=1 -I/opt/sagemath/sage-7.6/local/include/python2.7 -c NormalizModule.cpp -o build/temp.linux-i686-2.7/NormalizModule.o
48    NormalizModule.cpp: In function 'PyObject* NmzToPyLong(size_t)':
49    NormalizModule.cpp:120:11: error: redefinition of 'PyObject* NmzToPyLong(size_t)'
50     PyObject* NmzToPyLong( size_t in ){
51               ^
52    NormalizModule.cpp:114:11: note: 'PyObject* NmzToPyLong(libnormaliz::key_t)' previously defined here
53     PyObject* NmzToPyLong( libnormaliz::key_t in ){
54               ^
55    error: command 'gcc' failed with exit status 1
56    Running setup.py install for PyNormaliz: finished with status 'error'
57Cleaning up...
58  Removing source in /tmp/pip-_uUBOk-build
59Command "/opt/sagemath/sage-7.6/local/bin/python -u -c "import setuptools, tokenize;__file__='/tmp/pip-_uUBOk-build/setup.py';exec(compile(getattr(tokenize, 'open', open)(__file__).read().replace('\r\n', '\n'), __file__, 'exec'))" --no-user-cfg install --record /tmp/pip-U7tp6c-record/install-record.txt --single-version-externally-managed --compile" failed with error code 1 in /tmp/pip-_uUBOk-build/
60Exception information:
61Traceback (most recent call last):
62  File "/opt/sagemath/sage-7.6/local/lib/python2.7/site-packages/pip/basecommand.py", line 215, in main
63    status = self.run(options, args)
64  File "/opt/sagemath/sage-7.6/local/lib/python2.7/site-packages/pip/commands/install.py", line 317, in run
65    prefix=options.prefix_path,
66  File "/opt/sagemath/sage-7.6/local/lib/python2.7/site-packages/pip/req/req_set.py", line 742, in install
67    **kwargs
68  File "/opt/sagemath/sage-7.6/local/lib/python2.7/site-packages/pip/req/req_install.py", line 880, in install
69    spinner=spinner,
70  File "/opt/sagemath/sage-7.6/local/lib/python2.7/site-packages/pip/utils/__init__.py", line 718, in call_subprocess
71    % (command_desc, proc.returncode, cwd))
72InstallationError: Command "/opt/sagemath/sage-7.6/local/bin/python -u -c "import setuptools, tokenize;__file__='/tmp/pip-_uUBOk-build/setup.py';exec(compile(getattr(tokenize, 'open', open)(__file__).read().replace('\r\n', '\n'), __file__, 'exec'))" --no-user-cfg install --record /tmp/pip-U7tp6c-record/install-record.txt --single-version-externally-managed --compile" failed with error code 1 in /tmp/pip-_uUBOk-build/
73Error installing PyNormaliz.
74
75real    0m2.693s
76user    0m2.048s
77sys     0m0.148s
78************************************************************************
79Error installing package pynormaliz-1.0
80************************************************************************
81Please email sage-devel (http://groups.google.com/group/sage-devel)
82explaining the problem and including the relevant part of the log file
83  /opt/sagemath/sage-7.6/logs/pkgs/pynormaliz-1.0.log
84Describe your computer, operating system, etc.
85If you want to try to fix the problem yourself, *don't* just cd to
86/opt/sagemath/sage-7.6/local/var/tmp/sage/build/pynormaliz-1.0 and type 'make' or whatever is appropriate.
87Instead, the following commands setup all environment variables
88correctly and load a subshell for you to debug the error:
89  (cd '/opt/sagemath/sage-7.6/local/var/tmp/sage/build/pynormaliz-1.0' && '/opt/sagemath/sage-7.6/sage' --sh)
90When you are done debugging, you can type "exit" to leave the subshell.
91************************************************************************