Ticket #22627: r-3.3.3.p1.log

File r-3.3.3.p1.log, 117.2 KB (added by gouezel, 6 years ago)
Line 
1Found local metadata for r-3.3.3.p1
2Using cached file /home/Sebastien/sage33/sage/upstream/R-3.3.3.tar.gz
3r-3.3.3.p1
4====================================================
5Setting up build directory for r-3.3.3.p1
6Finished extraction
7Applying patches from ../patches...
8Applying ../patches/autoconf_verb_dash.patch
9patching file configure
10Hunk #1 succeeded at 24690 (offset 1813 lines).
11Hunk #2 succeeded at 25046 (offset 1813 lines).
12Applying ../patches/hardcoded_dirs.patch
13patching file src/scripts/R.sh.in
14patching file src/scripts/Makefile.in
15Applying ../patches/libcurl_https_support.patch
16patching file configure
17Hunk #1 succeeded at 36239 (offset 12 lines).
18Hunk #2 succeeded at 36248 (offset 12 lines).
19patching file m4/R.m4
20Hunk #1 succeeded at 4203 (offset 7 lines).
21Applying ../patches/link_all_shared_libs.patch
22patching file etc/Makeconf.in
23Hunk #1 succeeded at 123 (offset -2 lines).
24Applying ../patches/m4_macro_bug.patch
25patching file m4/R.m4
26Hunk #1 succeeded at 3194 (offset 1 line).
27Hunk #2 succeeded at 3216 (offset 1 line).
28Applying ../patches/parent_sig_handler.patch
29patching file src/library/parallel/src/fork.c
30Applying ../patches/rcmd_exec.patch
31patching file src/scripts/Rcmd.in
32****************************************************
33Host system:
34CYGWIN_NT-10.0 PC_Sebastien 2.7.0(0.306/5/3) 2017-02-12 13:18 x86_64 Cygwin
35****************************************************
36C compiler: gcc
37C compiler version:
38Using built-in specs.
39COLLECT_GCC=gcc
40COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-pc-cygwin/5.4.0/lto-wrapper.exe
41Target: x86_64-pc-cygwin
42Configured with: /cygdrive/i/szsz/tmpp/gcc/gcc-5.4.0-1.x86_64/src/gcc-5.4.0/configure --srcdir=/cygdrive/i/szsz/tmpp/gcc/gcc-5.4.0-1.x86_64/src/gcc-5.4.0 --prefix=/usr --exec-prefix=/usr --localstatedir=/var --sysconfdir=/etc --docdir=/usr/share/doc/gcc --htmldir=/usr/share/doc/gcc/html -C --build=x86_64-pc-cygwin --host=x86_64-pc-cygwin --target=x86_64-pc-cygwin --without-libiconv-prefix --without-libintl-prefix --libexecdir=/usr/lib --enable-shared --enable-shared-libgcc --enable-static --enable-version-specific-runtime-libs --enable-bootstrap --enable-__cxa_atexit --with-dwarf2 --with-tune=generic --enable-languages=ada,c,c++,fortran,lto,objc,obj-c++ --enable-graphite --enable-threads=posix --enable-libatomic --enable-libcilkrts --enable-libgomp --enable-libitm --enable-libquadmath --enable-libquadmath-support --enable-libssp --enable-libada --enable-libgcj-sublibs --disable-java-awt --disable-symvers --with-ecj-jar=/usr/share/java/ecj.jar --with-gnu-ld --with-gnu-as --with-cloog-include=/usr/include/cloog-isl --without-libiconv-prefix --without-libintl-prefix --with-system-zlib --enable-linker-build-id --with-default-libstdcxx-abi=gcc4-compatible
43Thread model: posix
44gcc version 5.4.0 (GCC)
45****************************************************
46R_CONFIGURE_BLAS=--with-blas=-L/home/Sebastien/sage33/sage/local/lib -lopenblas
47R_CONFIGURE_LAPACK=--with-lapack=-L/home/Sebastien/sage33/sage/local/lib -lopenblas
48mv: cannot stat 'patches/cygwin/*.patch': No such file or directory
49checking build system type... x86_64-unknown-cygwin
50checking host system type... x86_64-unknown-cygwin
51loading site script './config.site'
52loading build-specific script './config.site'
53checking for pwd... /usr/bin/pwd
54checking whether builddir is srcdir... yes
55checking for working aclocal... found
56checking for working autoconf... found
57checking for working automake... found
58checking for working autoheader... found
59checking whether ln -s works... yes
60checking for bison... no
61checking for byacc... no
62checking for ar... ar
63checking for a BSD-compatible install... /usr/bin/install -c
64checking for sed... /usr/bin/sed
65checking for which... /usr/bin/which
66checking for less... /usr/bin/less
67checking for gtar... no
68checking for gnutar... no
69checking for tar... /usr/bin/tar
70checking for tex... /cygdrive/c/Program Files (x86)/MiKTeX 2.9/miktex/bin/tex
71checking for pdftex... /cygdrive/c/Program Files (x86)/MiKTeX 2.9/miktex/bin/pdftex
72checking for pdflatex... /cygdrive/c/Program Files (x86)/MiKTeX 2.9/miktex/bin/pdflatex
73checking for makeindex... /cygdrive/c/Program Files (x86)/MiKTeX 2.9/miktex/bin/makeindex
74checking for texi2any... /usr/bin/texi2any
75checking whether texi2any version is at least 5.1... yes
76checking for ginstall-info... no
77checking for install-info... /usr/bin/install-info
78checking for texi2dvi... no
79checking for kpsewhich... /cygdrive/c/Program Files (x86)/MiKTeX 2.9/miktex/bin/kpsewhich
80checking for latex inconsolata package... ./configure: line 5253: /cygdrive/c/Program: No such file or directory
81./configure: line 5258: /cygdrive/c/Program: No such file or directory
82missing
83configure: WARNING: neither inconsolata.sty nor zi4.sty found: PDF vignettes and package manuals will not be rendered optimally
84checking for unzip... no
85checking for zip... no
86checking for gzip... /usr/bin/gzip
87checking for bzip2... /home/Sebastien/sage33/sage/local/bin/bzip2
88checking for firefox... no
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96configure: WARNING: I could not determine a browser
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109checking for kghostview... no
110configure: WARNING: I could not determine a PDF viewer
111checking for notangle... false
112checking for realpath... /usr/bin/realpath
113checking for pkg-config... /home/Sebastien/sage33/sage/local/bin/pkg-config
114checking for gcc... gcc
115checking whether the C compiler works... yes
116checking for C compiler default output file name... a.exe
117checking for suffix of executables... .exe
118checking whether we are cross compiling... no
119checking for suffix of object files... o
120checking whether we are using the GNU C compiler... yes
121checking whether gcc accepts -g... yes
122checking for gcc option to accept ISO C89... none needed
123checking how to run the C preprocessor... gcc -E
124checking for grep that handles long lines and -e... /usr/bin/grep
125checking for egrep... /usr/bin/grep -E
126checking whether gcc needs -traditional... no
127checking for ANSI C header files... yes
128checking for sys/types.h... yes
129checking for sys/stat.h... yes
130checking for stdlib.h... yes
131checking for string.h... yes
132checking for memory.h... yes
133checking for strings.h... yes
134checking for inttypes.h... yes
135checking for stdint.h... yes
136checking for unistd.h... yes
137checking minix/config.h usability... no
138checking minix/config.h presence... no
139checking for minix/config.h... no
140checking whether it is safe to define __EXTENSIONS__... yes
141checking how to run the C preprocessor... gcc -E
142defining F77 to be gfortran
143checking whether we are using the GNU Fortran 77 compiler... yes
144checking whether gfortran accepts -g... yes
145checking whether we are using the GNU C++ compiler... yes
146checking whether g++ accepts -g... yes
147checking how to run the C++ preprocessor... g++ -E
148checking whether __attribute__((visibility())) is supported... no
149checking whether gcc accepts -fvisibility... yes
150checking whether gfortran accepts -fvisibility... yes
151checking for gcc... gcc
152checking whether we are using the GNU Objective C compiler... no
153checking whether gcc accepts -g... no
154checking for Objective C++ compiler... trying some possibilities
155checking whether g++ can compile ObjC++... no
156checking whether  can compile ObjC++... no
157no working ObjC++ compiler found
158checking how to print strings... printf
159checking for a sed that does not truncate output... (cached) /usr/bin/sed
160checking for fgrep... /usr/bin/grep -F
161checking for ld used by gcc... ld
162checking if the linker (ld) is GNU ld... yes
163checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
164checking the name lister (/usr/bin/nm -B) interface... BSD nm
165checking the maximum length of command line arguments... 8192
166checking how to convert x86_64-unknown-cygwin file names to x86_64-unknown-cygwin format... func_convert_file_noop
167checking how to convert x86_64-unknown-cygwin file names to toolchain format... func_convert_file_noop
168checking for ld option to reload object files... -r
169checking for objdump... objdump
170checking how to recognize dependent libraries... file_magic ^x86 archive import|^x86 DLL
171checking for dlltool... dlltool
172checking how to associate runtime and link libraries... func_cygming_dll_for_implib
173checking for archiver @FILE support... @
174checking for strip... strip
175checking for ranlib... ranlib
176checking for gawk... gawk
177checking command to parse /usr/bin/nm -B output from gcc object... ok
178checking for sysroot... no
179checking for a working dd... /usr/bin/dd
180checking how to truncate binary pipes... /usr/bin/dd bs=4096 count=1
181checking for mt... no
182checking if : is a manifest tool... no
183checking for dlfcn.h... yes
184checking for objdir... .libs
185checking if gcc supports -fno-rtti -fno-exceptions... no
186checking for gcc option to produce PIC... -DDLL_EXPORT -DPIC
187checking if gcc PIC flag -DDLL_EXPORT -DPIC works... yes
188checking if gcc static flag -static works... yes
189checking if gcc supports -c -o file.o... yes
190checking if gcc supports -c -o file.o... (cached) yes
191checking whether the gcc linker (ld) supports shared libraries... yes
192checking whether -lc should be explicitly linked in... yes
193checking dynamic linker characteristics... Win32 ld.exe
194checking how to hardcode library paths into programs... immediate
195checking whether stripping libraries is possible... yes
196checking if libtool supports shared libraries... yes
197checking whether to build shared libraries... yes
198checking whether to build static libraries... no
199checking how to run the C++ preprocessor... g++ -E
200checking for ld used by g++... ld
201checking if the linker (ld) is GNU ld... yes
202checking whether the g++ linker (ld) supports shared libraries... yes
203checking for g++ option to produce PIC... -DDLL_EXPORT -DPIC
204checking if g++ PIC flag -DDLL_EXPORT -DPIC works... yes
205checking if g++ static flag -static works... yes
206checking if g++ supports -c -o file.o... yes
207checking if g++ supports -c -o file.o... (cached) yes
208checking whether the g++ linker (ld) supports shared libraries... yes
209checking dynamic linker characteristics... Win32 ld.exe
210checking how to hardcode library paths into programs... immediate
211checking if libtool supports shared libraries... yes
212checking whether to build shared libraries... yes
213checking whether to build static libraries... no
214checking for gfortran option to produce PIC... -DDLL_EXPORT
215checking if gfortran PIC flag -DDLL_EXPORT works... yes
216checking if gfortran static flag -static works... no
217checking if gfortran supports -c -o file.o... yes
218checking if gfortran supports -c -o file.o... (cached) yes
219checking whether the gfortran linker (ld) supports shared libraries... yes
220checking dynamic linker characteristics... Win32 ld.exe
221checking how to hardcode library paths into programs... immediate
222checking for sin in -lm... yes
223checking for dlopen in -ldl... yes
224checking readline/history.h usability... yes
225checking readline/history.h presence... yes
226checking for readline/history.h... yes
227checking readline/readline.h usability... yes
228checking readline/readline.h presence... yes
229checking for readline/readline.h... yes
230checking for rl_callback_read_char in -lreadline... yes
231checking for history_truncate_file... yes
232checking whether rl_completion_matches exists and is declared... yes
233checking for ANSI C header files... (cached) yes
234checking for dirent.h that defines DIR... yes
235checking for library containing opendir... none required
236checking for sys/wait.h that is POSIX.1 compatible... yes
237checking arpa/inet.h usability... yes
238checking arpa/inet.h presence... yes
239checking for arpa/inet.h... yes
240checking dl.h usability... no
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244checking elf.h usability... yes
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247checking features.h usability... yes
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250checking fcntl.h usability... yes
251checking fcntl.h presence... yes
252checking for fcntl.h... yes
253checking floatingpoint.h usability... no
254checking floatingpoint.h presence... no
255checking for floatingpoint.h... no
256checking fpu_control.h usability... no
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259checking glob.h usability... yes
260checking glob.h presence... yes
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262checking grp.h usability... yes
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265checking langinfo.h usability... yes
266checking langinfo.h presence... yes
267checking for langinfo.h... yes
268checking netdb.h usability... yes
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271checking netinet/in.h usability... yes
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277checking sched.h usability... yes
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281checking sys/param.h usability... yes
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288checking sys/select.h presence... yes
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290checking sys/socket.h usability... yes
291checking sys/socket.h presence... yes
292checking for sys/socket.h... yes
293checking for sys/stat.h... (cached) yes
294checking sys/time.h usability... yes
295checking sys/time.h presence... yes
296checking for sys/time.h... yes
297checking sys/times.h usability... yes
298checking sys/times.h presence... yes
299checking for sys/times.h... yes
300checking sys/utsname.h usability... yes
301checking sys/utsname.h presence... yes
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303checking for unistd.h... (cached) yes
304checking utime.h usability... yes
305checking utime.h presence... yes
306checking for utime.h... yes
307checking stdalign.h usability... yes
308checking stdalign.h presence... yes
309checking for stdalign.h... yes
310checking errno.h usability... yes
311checking errno.h presence... yes
312checking for errno.h... yes
313checking for inttypes.h... (cached) yes
314checking limits.h usability... yes
315checking limits.h presence... yes
316checking for limits.h... yes
317checking locale.h usability... yes
318checking locale.h presence... yes
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320checking stdarg.h usability... yes
321checking stdarg.h presence... yes
322checking for stdarg.h... yes
323checking stdbool.h usability... yes
324checking stdbool.h presence... yes
325checking for stdbool.h... yes
326checking for stdint.h... (cached) yes
327checking for string.h... (cached) yes
328checking whether setjmp.h is POSIX.1 compatible... yes
329checking whether sigsetjmp is declared... yes
330checking whether siglongjmp is declared... yes
331checking for GNU C library with version >= 2... no
332checking return type of signal handlers... void
333checking for uint64_t... yes
334checking for int64_t... yes
335checking for int_fast64_t... yes
336checking for pid_t... yes
337checking for size_t... yes
338checking whether SIZE_MAX is declared... yes
339checking for blkcnt_t... yes
340checking for type of socket length... int *
341checking for stack_t... yes
342checking for intptr_t... yes
343checking for uintptr_t... yes
344checking whether byte ordering is bigendian... no
345checking for an ANSI C-conforming const... yes
346checking for gcc option to accept ISO C99... none needed
347checking for gcc option to accept ISO Standard C... (cached) none needed
348checking for inline... inline
349checking size of int... 4
350checking size of long... 8
351checking size of long long... 8
352checking size of double... 8
353checking size of size_t... 8
354checking size of long double... 16
355checking whether we can compute C Make dependencies... yes, using $(CC) -MM
356checking whether gcc supports -c -o FILE.lo... yes
357checking for gcc option to support OpenMP... -fopenmp
358checking how to get verbose linking output from gfortran... -###
359checking for Fortran 77 libraries of gfortran...  -L/home/Sebastien/sage33/sage/local/lib -L/home/Sebastien/sage33/sage/local/lib/../lib -L/usr/lib/gcc/x86_64-pc-cygwin/5.4.0 -L/usr/lib/gcc/x86_64-pc-cygwin/5.4.0/../../../../x86_64-pc-cygwin/lib/../lib -L/usr/lib/gcc/x86_64-pc-cygwin/5.4.0/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-pc-cygwin/5.4.0/../../../../x86_64-pc-cygwin/lib -L/usr/lib/gcc/x86_64-pc-cygwin/5.4.0/../../.. -lgfortran -lquadmath -lm -lcygwin -ladvapi32 -lshell32 -luser32
360checking how to get verbose linking output from gcc... -###
361checking for C libraries of gcc...  -L/home/Sebastien/sage33/sage/local/lib -L/home/Sebastien/sage33/sage/local/lib/../lib -L/usr/lib/gcc/x86_64-pc-cygwin/5.4.0 -L/usr/lib/gcc/x86_64-pc-cygwin/5.4.0/../../../../x86_64-pc-cygwin/lib/../lib -L/usr/lib/gcc/x86_64-pc-cygwin/5.4.0/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-pc-cygwin/5.4.0/../../../../x86_64-pc-cygwin/lib -L/usr/lib/gcc/x86_64-pc-cygwin/5.4.0/../../.. -lgcc_s -lcygwin -ladvapi32 -lshell32 -luser32 -lkernel32
362checking for dummy main to link with Fortran 77 libraries... none
363checking for Fortran 77 name-mangling scheme... lower case, underscore, no extra underscore
364checking whether gfortran appends underscores to external names... yes
365checking whether gfortran appends extra underscores to external names... no
366checking whether mixed C/Fortran code can be run... yes
367checking whether gfortran and gcc agree on int and double... yes
368checking whether gfortran and gcc agree on double complex... yes
369checking for gfortran option to support OpenMP... -fopenmp
370checking whether g++ accepts -M for generating dependencies... yes
371checking for g++ option to support OpenMP... -fopenmp
372checking whether we can compute ObjC Make dependencies... no
373checking whether C runtime needs -D__NO_MATH_INLINES... no
374checking for xmkmf... no
375checking whether g++  supports C++11 features by default... no
376checking whether g++  supports C++11 features with -std=c++11... yes
377checking for off_t... yes
378checking for working alloca.h... yes
379checking for alloca... yes
380checking whether alloca is declared... yes
381checking whether expm1 exists and is declared... yes
382checking whether hypot exists and is declared... yes
383checking whether log1p exists and is declared... yes
384checking whether log1pl exists and is declared... yes
385checking whether log2 exists and is declared... yes
386checking whether log10 exists and is declared... yes
387checking whether nearbyint exists and is declared... yes
388checking whether nearbyintl exists and is declared... yes
389checking whether powl exists and is declared... yes
390checking whether rint exists and is declared... yes
391checking whether rintl exists and is declared... yes
392checking whether va_copy exists and is declared... yes
393checking for isblank... yes
394checking sunmath.h usability... no
395checking sunmath.h presence... no
396checking for sunmath.h... no
397checking for cospi in -lsunmath... no
398checking for atanpi... no
399checking for atan2pi... no
400checking for cospi... no
401checking for exp10... yes
402checking for pown... no
403checking for sinpi... no
404checking for tanpi... no
405checking for __cospi... no
406checking for __sinpi... no
407checking for __tanpi... no
408checking for fseeko... yes
409checking for ftello... yes
410checking for matherr... yes
411checking whether fcntl exists and is declared... yes
412checking whether getgrgid exists and is declared... yes
413checking whether getpwuid exists and is declared... yes
414checking whether kill exists and is declared... yes
415checking whether sigaction exists and is declared... yes
416checking whether sigaltstack exists and is declared... yes
417checking whether sigemptyset exists and is declared... yes
418checking whether fdopen exists and is declared... yes
419checking whether popen exists and is declared... yes
420checking whether getline exists and is declared... yes
421checking whether setenv exists and is declared... yes
422checking whether unsetenv exists and is declared... yes
423checking whether getrlimit exists and is declared... yes
424checking whether getrusage exists and is declared... yes
425checking whether getpriority exists and is declared... yes
426checking whether chmod exists and is declared... yes
427checking whether mkfifo exists and is declared... yes
428checking whether stat exists and is declared... yes
429checking whether umask exists and is declared... yes
430checking whether gettimeofday exists and is declared... yes
431checking whether utimes exists and is declared... yes
432checking whether times exists and is declared... yes
433checking whether gmtime_r exists and is declared... yes
434checking whether localtime_r exists and is declared... yes
435checking whether nl_langinfo exists and is declared... yes
436checking whether access exists and is declared... yes
437checking whether chdir exists and is declared... yes
438checking whether execv exists and is declared... yes
439checking whether ftruncate exists and is declared... yes
440checking whether getcwd exists and is declared... yes
441checking whether geteuid exists and is declared... yes
442checking whether getuid exists and is declared... yes
443checking whether link exists and is declared... yes
444checking whether readlink exists and is declared... yes
445checking whether symlink exists and is declared... yes
446checking whether sysconf exists and is declared... yes
447checking whether sched_setaffinity exists and is declared... no
448checking whether sched_getaffinity exists and is declared... no
449checking whether utime exists and is declared... yes
450checking for clock_gettime in -lrt... yes
451checking whether clock_gettime exists and is declared... yes
452checking whether timespec_get exists and is declared... no
453checking for putenv... yes
454checking whether putenv is declared... yes
455checking for vasprintf... yes
456checking whether vasprintf is declared... yes
457checking for mempcpy... yes
458checking for realpath... yes
459checking whether realpath is declared... yes
460checking whether glob exists and is declared... yes
461checking for isnan... yes
462checking whether isfinite is declared... yes
463checking whether isnan is declared... yes
464checking whether you have IEEE 754 floating-point arithmetic... yes
465checking whether putenv("FOO") can unset an environment variable... yes
466checking whether putenv("FOO=") can unset an environment variable... no
467checking for nl_langinfo and CODESET... yes
468checking for mkdtemp... yes
469checking for strdup... yes
470checking for strncasecmp... yes
471checking whether mkdtemp is declared... yes
472checking whether strdup is declared... yes
473checking whether strncasecmp is declared... yes
474checking for library containing connect... none required
475checking for library containing gethostbyname... none required
476checking for library containing xdr_string... no
477checking for __setfpucw... no
478checking for working calloc... yes
479checking for working isfinite... yes
480checking for working log1p... yes
481checking whether ftell works correctly on files opened for append... yes
482checking for working sigaction... yes
483checking whether mktime sets errno... no
484checking whether mktime works correctly outside 1902-2037... yes
485checking complex.h usability... yes
486checking complex.h presence... yes
487checking for complex.h... yes
488checking for double complex... yes
489checking whether C99 double complex is supported... yes
490checking whether cabs exists and is declared... yes
491checking whether carg exists and is declared... yes
492checking whether cexp exists and is declared... yes
493checking whether clog exists and is declared... yes
494checking whether csqrt exists and is declared... yes
495checking whether cpow exists and is declared... yes
496checking whether ccos exists and is declared... yes
497checking whether csin exists and is declared... yes
498checking whether ctan exists and is declared... yes
499checking whether cacos exists and is declared... yes
500checking whether casin exists and is declared... yes
501checking whether catan exists and is declared... yes
502checking whether ccosh exists and is declared... yes
503checking whether csinh exists and is declared... yes
504checking whether ctanh exists and is declared... yes
505checking whether 'struct tm' includes tm_zone... yes
506checking whether 'struct tm' includes tm_gmtoff... yes
507checking for dgemm_ in -L/home/Sebastien/sage33/sage/local/lib -lopenblas... yes
508checking whether double complex BLAS can be used... yes
509checking whether the BLAS is complete... yes
510checking for dpstrf_... yes
511checking iconv.h usability... yes
512checking iconv.h presence... yes
513checking for iconv.h... yes
514checking for iconv... in libiconv
515checking whether iconv accepts "UTF-8", "latin1", "ASCII" and "UCS-*"... yes
516checking for iconvlist... yes
517checking for iconv... yes
518checking for iconv declaration...
519         extern size_t iconv (iconv_t cd, char * *inbuf, size_t *inbytesleft, char * *outbuf, size_t *outbytesleft);
520checking wchar.h usability... yes
521checking wchar.h presence... yes
522checking for wchar.h... yes
523checking wctype.h usability... yes
524checking wctype.h presence... yes
525checking for wctype.h... yes
526checking whether mbrtowc exists and is declared... yes
527checking whether wcrtomb exists and is declared... yes
528checking whether wcscoll exists and is declared... yes
529checking whether wcsftime exists and is declared... yes
530checking whether wcstod exists and is declared... yes
531checking whether mbstowcs exists and is declared... yes
532checking whether wcstombs exists and is declared... yes
533checking whether wctrans exists and is declared... yes
534checking whether iswblank exists and is declared... yes
535checking whether wctype exists and is declared... yes
536checking whether iswctype exists and is declared... yes
537checking for wctrans_t... yes
538checking for mbstate_t... yes
539checking for ICU... no
540checking for X... libraries , headers
541checking for gethostbyname... yes
542checking for connect... yes
543checking for remove... yes
544checking for shmat... yes
545checking for IceConnectionNumber in -lICE... no
546checking X11/Intrinsic.h usability... no
547checking X11/Intrinsic.h presence... no
548checking for X11/Intrinsic.h... no
549configure: error: --with-x=yes (default) and X11 headers/libs are not available
550Configuring R without X11
551checking build system type... x86_64-unknown-cygwin
552checking host system type... x86_64-unknown-cygwin
553loading site script './config.site'
554loading build-specific script './config.site'
555checking for pwd... /usr/bin/pwd
556checking whether builddir is srcdir... yes
557checking for working aclocal... found
558checking for working autoconf... found
559checking for working automake... found
560checking for working autoheader... found
561checking whether ln -s works... yes
562checking for bison... no
563checking for byacc... no
564checking for ar... ar
565checking for a BSD-compatible install... /usr/bin/install -c
566checking for sed... /usr/bin/sed
567checking for which... /usr/bin/which
568checking for less... /usr/bin/less
569checking for gtar... no
570checking for gnutar... no
571checking for tar... /usr/bin/tar
572checking for tex... /cygdrive/c/Program Files (x86)/MiKTeX 2.9/miktex/bin/tex
573checking for pdftex... /cygdrive/c/Program Files (x86)/MiKTeX 2.9/miktex/bin/pdftex
574checking for pdflatex... /cygdrive/c/Program Files (x86)/MiKTeX 2.9/miktex/bin/pdflatex
575checking for makeindex... /cygdrive/c/Program Files (x86)/MiKTeX 2.9/miktex/bin/makeindex
576checking for texi2any... /usr/bin/texi2any
577checking whether texi2any version is at least 5.1... yes
578checking for ginstall-info... no
579checking for install-info... /usr/bin/install-info
580checking for texi2dvi... no
581checking for kpsewhich... /cygdrive/c/Program Files (x86)/MiKTeX 2.9/miktex/bin/kpsewhich
582checking for latex inconsolata package... ./configure: line 5253: /cygdrive/c/Program: No such file or directory
583./configure: line 5258: /cygdrive/c/Program: No such file or directory
584missing
585configure: WARNING: neither inconsolata.sty nor zi4.sty found: PDF vignettes and package manuals will not be rendered optimally
586checking for unzip... no
587checking for zip... no
588checking for gzip... /usr/bin/gzip
589checking for bzip2... /home/Sebastien/sage33/sage/local/bin/bzip2
590checking for firefox... no
591checking for mozilla... no
592checking for galeon... no
593checking for opera... no
594checking for xdg-open... no
595checking for kfmclient... no
596checking for gnome-moz-remote... no
597checking for open... no
598configure: WARNING: I could not determine a browser
599checking for acroread... no
600checking for acroread4... no
601checking for xdg-open... no
602checking for evince... no
603checking for xpdf... no
604checking for gv... no
605checking for gnome-gv... no
606checking for ggv... no
607checking for okular... no
608checking for kpdf... no
609checking for open... no
610checking for gpdf... no
611checking for kghostview... no
612configure: WARNING: I could not determine a PDF viewer
613checking for notangle... false
614checking for realpath... /usr/bin/realpath
615checking for pkg-config... /home/Sebastien/sage33/sage/local/bin/pkg-config
616checking for gcc... gcc
617checking whether the C compiler works... yes
618checking for C compiler default output file name... a.exe
619checking for suffix of executables... .exe
620checking whether we are cross compiling... no
621checking for suffix of object files... o
622checking whether we are using the GNU C compiler... yes
623checking whether gcc accepts -g... yes
624checking for gcc option to accept ISO C89... none needed
625checking how to run the C preprocessor... gcc -E
626checking for grep that handles long lines and -e... /usr/bin/grep
627checking for egrep... /usr/bin/grep -E
628checking whether gcc needs -traditional... no
629checking for ANSI C header files... yes
630checking for sys/types.h... yes
631checking for sys/stat.h... yes
632checking for stdlib.h... yes
633checking for string.h... yes
634checking for memory.h... yes
635checking for strings.h... yes
636checking for inttypes.h... yes
637checking for stdint.h... yes
638checking for unistd.h... yes
639checking minix/config.h usability... no
640checking minix/config.h presence... no
641checking for minix/config.h... no
642checking whether it is safe to define __EXTENSIONS__... yes
643checking how to run the C preprocessor... gcc -E
644defining F77 to be gfortran
645checking whether we are using the GNU Fortran 77 compiler... yes
646checking whether gfortran accepts -g... yes
647checking whether we are using the GNU C++ compiler... yes
648checking whether g++ accepts -g... yes
649checking how to run the C++ preprocessor... g++ -E
650checking whether __attribute__((visibility())) is supported... no
651checking whether gcc accepts -fvisibility... yes
652checking whether gfortran accepts -fvisibility... yes
653checking for gcc... gcc
654checking whether we are using the GNU Objective C compiler... no
655checking whether gcc accepts -g... no
656checking for Objective C++ compiler... trying some possibilities
657checking whether g++ can compile ObjC++... no
658checking whether  can compile ObjC++... no
659no working ObjC++ compiler found
660checking how to print strings... printf
661checking for a sed that does not truncate output... (cached) /usr/bin/sed
662checking for fgrep... /usr/bin/grep -F
663checking for ld used by gcc... ld
664checking if the linker (ld) is GNU ld... yes
665checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
666checking the name lister (/usr/bin/nm -B) interface... BSD nm
667checking the maximum length of command line arguments... 8192
668checking how to convert x86_64-unknown-cygwin file names to x86_64-unknown-cygwin format... func_convert_file_noop
669checking how to convert x86_64-unknown-cygwin file names to toolchain format... func_convert_file_noop
670checking for ld option to reload object files... -r
671checking for objdump... objdump
672checking how to recognize dependent libraries... file_magic ^x86 archive import|^x86 DLL
673checking for dlltool... dlltool
674checking how to associate runtime and link libraries... func_cygming_dll_for_implib
675checking for archiver @FILE support... @
676checking for strip... strip
677checking for ranlib... ranlib
678checking for gawk... gawk
679checking command to parse /usr/bin/nm -B output from gcc object... ok
680checking for sysroot... no
681checking for a working dd... /usr/bin/dd
682checking how to truncate binary pipes... /usr/bin/dd bs=4096 count=1
683checking for mt... no
684checking if : is a manifest tool... no
685checking for dlfcn.h... yes
686checking for objdir... .libs
687checking if gcc supports -fno-rtti -fno-exceptions... no
688checking for gcc option to produce PIC... -DDLL_EXPORT -DPIC
689checking if gcc PIC flag -DDLL_EXPORT -DPIC works... yes
690checking if gcc static flag -static works... yes
691checking if gcc supports -c -o file.o... yes
692checking if gcc supports -c -o file.o... (cached) yes
693checking whether the gcc linker (ld) supports shared libraries... yes
694checking whether -lc should be explicitly linked in... yes
695checking dynamic linker characteristics... Win32 ld.exe
696checking how to hardcode library paths into programs... immediate
697checking whether stripping libraries is possible... yes
698checking if libtool supports shared libraries... yes
699checking whether to build shared libraries... yes
700checking whether to build static libraries... no
701checking how to run the C++ preprocessor... g++ -E
702checking for ld used by g++... ld
703checking if the linker (ld) is GNU ld... yes
704checking whether the g++ linker (ld) supports shared libraries... yes
705checking for g++ option to produce PIC... -DDLL_EXPORT -DPIC
706checking if g++ PIC flag -DDLL_EXPORT -DPIC works... yes
707checking if g++ static flag -static works... yes
708checking if g++ supports -c -o file.o... yes
709checking if g++ supports -c -o file.o... (cached) yes
710checking whether the g++ linker (ld) supports shared libraries... yes
711checking dynamic linker characteristics... Win32 ld.exe
712checking how to hardcode library paths into programs... immediate
713checking if libtool supports shared libraries... yes
714checking whether to build shared libraries... yes
715checking whether to build static libraries... no
716checking for gfortran option to produce PIC... -DDLL_EXPORT
717checking if gfortran PIC flag -DDLL_EXPORT works... yes
718checking if gfortran static flag -static works... no
719checking if gfortran supports -c -o file.o... yes
720checking if gfortran supports -c -o file.o... (cached) yes
721checking whether the gfortran linker (ld) supports shared libraries... yes
722checking dynamic linker characteristics... Win32 ld.exe
723checking how to hardcode library paths into programs... immediate
724checking for sin in -lm... yes
725checking for dlopen in -ldl... yes
726checking readline/history.h usability... yes
727checking readline/history.h presence... yes
728checking for readline/history.h... yes
729checking readline/readline.h usability... yes
730checking readline/readline.h presence... yes
731checking for readline/readline.h... yes
732checking for rl_callback_read_char in -lreadline... yes
733checking for history_truncate_file... yes
734checking whether rl_completion_matches exists and is declared... yes
735checking for ANSI C header files... (cached) yes
736checking for dirent.h that defines DIR... yes
737checking for library containing opendir... none required
738checking for sys/wait.h that is POSIX.1 compatible... yes
739checking arpa/inet.h usability... yes
740checking arpa/inet.h presence... yes
741checking for arpa/inet.h... yes
742checking dl.h usability... no
743checking dl.h presence... no
744checking for dl.h... no
745checking for dlfcn.h... (cached) yes
746checking elf.h usability... yes
747checking elf.h presence... yes
748checking for elf.h... yes
749checking features.h usability... yes
750checking features.h presence... yes
751checking for features.h... yes
752checking fcntl.h usability... yes
753checking fcntl.h presence... yes
754checking for fcntl.h... yes
755checking floatingpoint.h usability... no
756checking floatingpoint.h presence... no
757checking for floatingpoint.h... no
758checking fpu_control.h usability... no
759checking fpu_control.h presence... no
760checking for fpu_control.h... no
761checking glob.h usability... yes
762checking glob.h presence... yes
763checking for glob.h... yes
764checking grp.h usability... yes
765checking grp.h presence... yes
766checking for grp.h... yes
767checking langinfo.h usability... yes
768checking langinfo.h presence... yes
769checking for langinfo.h... yes
770checking netdb.h usability... yes
771checking netdb.h presence... yes
772checking for netdb.h... yes
773checking netinet/in.h usability... yes
774checking netinet/in.h presence... yes
775checking for netinet/in.h... yes
776checking pwd.h usability... yes
777checking pwd.h presence... yes
778checking for pwd.h... yes
779checking sched.h usability... yes
780checking sched.h presence... yes
781checking for sched.h... yes
782checking for strings.h... (cached) yes
783checking sys/param.h usability... yes
784checking sys/param.h presence... yes
785checking for sys/param.h... yes
786checking sys/resource.h usability... yes
787checking sys/resource.h presence... yes
788checking for sys/resource.h... yes
789checking sys/select.h usability... yes
790checking sys/select.h presence... yes
791checking for sys/select.h... yes
792checking sys/socket.h usability... yes
793checking sys/socket.h presence... yes
794checking for sys/socket.h... yes
795checking for sys/stat.h... (cached) yes
796checking sys/time.h usability... yes
797checking sys/time.h presence... yes
798checking for sys/time.h... yes
799checking sys/times.h usability... yes
800checking sys/times.h presence... yes
801checking for sys/times.h... yes
802checking sys/utsname.h usability... yes
803checking sys/utsname.h presence... yes
804checking for sys/utsname.h... yes
805checking for unistd.h... (cached) yes
806checking utime.h usability... yes
807checking utime.h presence... yes
808checking for utime.h... yes
809checking stdalign.h usability... yes
810checking stdalign.h presence... yes
811checking for stdalign.h... yes
812checking errno.h usability... yes
813checking errno.h presence... yes
814checking for errno.h... yes
815checking for inttypes.h... (cached) yes
816checking limits.h usability... yes
817checking limits.h presence... yes
818checking for limits.h... yes
819checking locale.h usability... yes
820checking locale.h presence... yes
821checking for locale.h... yes
822checking stdarg.h usability... yes
823checking stdarg.h presence... yes
824checking for stdarg.h... yes
825checking stdbool.h usability... yes
826checking stdbool.h presence... yes
827checking for stdbool.h... yes
828checking for stdint.h... (cached) yes
829checking for string.h... (cached) yes
830checking whether setjmp.h is POSIX.1 compatible... yes
831checking whether sigsetjmp is declared... yes
832checking whether siglongjmp is declared... yes
833checking for GNU C library with version >= 2... no
834checking return type of signal handlers... void
835checking for uint64_t... yes
836checking for int64_t... yes
837checking for int_fast64_t... yes
838checking for pid_t... yes
839checking for size_t... yes
840checking whether SIZE_MAX is declared... yes
841checking for blkcnt_t... yes
842checking for type of socket length... int *
843checking for stack_t... yes
844checking for intptr_t... yes
845checking for uintptr_t... yes
846checking whether byte ordering is bigendian... no
847checking for an ANSI C-conforming const... yes
848checking for gcc option to accept ISO C99... none needed
849checking for gcc option to accept ISO Standard C... (cached) none needed
850checking for inline... inline
851checking size of int... 4
852checking size of long... 8
853checking size of long long... 8
854checking size of double... 8
855checking size of size_t... 8
856checking size of long double... 16
857checking whether we can compute C Make dependencies... yes, using $(CC) -MM
858checking whether gcc supports -c -o FILE.lo... yes
859checking for gcc option to support OpenMP... -fopenmp
860checking how to get verbose linking output from gfortran... -###
861checking for Fortran 77 libraries of gfortran...  -L/home/Sebastien/sage33/sage/local/lib -L/home/Sebastien/sage33/sage/local/lib/../lib -L/usr/lib/gcc/x86_64-pc-cygwin/5.4.0 -L/usr/lib/gcc/x86_64-pc-cygwin/5.4.0/../../../../x86_64-pc-cygwin/lib/../lib -L/usr/lib/gcc/x86_64-pc-cygwin/5.4.0/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-pc-cygwin/5.4.0/../../../../x86_64-pc-cygwin/lib -L/usr/lib/gcc/x86_64-pc-cygwin/5.4.0/../../.. -lgfortran -lquadmath -lm -lcygwin -ladvapi32 -lshell32 -luser32
862checking how to get verbose linking output from gcc... -###
863checking for C libraries of gcc...  -L/home/Sebastien/sage33/sage/local/lib -L/home/Sebastien/sage33/sage/local/lib/../lib -L/usr/lib/gcc/x86_64-pc-cygwin/5.4.0 -L/usr/lib/gcc/x86_64-pc-cygwin/5.4.0/../../../../x86_64-pc-cygwin/lib/../lib -L/usr/lib/gcc/x86_64-pc-cygwin/5.4.0/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-pc-cygwin/5.4.0/../../../../x86_64-pc-cygwin/lib -L/usr/lib/gcc/x86_64-pc-cygwin/5.4.0/../../.. -lgcc_s -lcygwin -ladvapi32 -lshell32 -luser32 -lkernel32
864checking for dummy main to link with Fortran 77 libraries... none
865checking for Fortran 77 name-mangling scheme... lower case, underscore, no extra underscore
866checking whether gfortran appends underscores to external names... yes
867checking whether gfortran appends extra underscores to external names... no
868checking whether mixed C/Fortran code can be run... yes
869checking whether gfortran and gcc agree on int and double... yes
870checking whether gfortran and gcc agree on double complex... yes
871checking for gfortran option to support OpenMP... -fopenmp
872checking whether g++ accepts -M for generating dependencies... yes
873checking for g++ option to support OpenMP... -fopenmp
874checking whether we can compute ObjC Make dependencies... no
875checking whether C runtime needs -D__NO_MATH_INLINES... no
876checking for xmkmf... no
877checking whether g++  supports C++11 features by default... no
878checking whether g++  supports C++11 features with -std=c++11... yes
879checking for off_t... yes
880checking for working alloca.h... yes
881checking for alloca... yes
882checking whether alloca is declared... yes
883checking whether expm1 exists and is declared... yes
884checking whether hypot exists and is declared... yes
885checking whether log1p exists and is declared... yes
886checking whether log1pl exists and is declared... yes
887checking whether log2 exists and is declared... yes
888checking whether log10 exists and is declared... yes
889checking whether nearbyint exists and is declared... yes
890checking whether nearbyintl exists and is declared... yes
891checking whether powl exists and is declared... yes
892checking whether rint exists and is declared... yes
893checking whether rintl exists and is declared... yes
894checking whether va_copy exists and is declared... yes
895checking for isblank... yes
896checking sunmath.h usability... no
897checking sunmath.h presence... no
898checking for sunmath.h... no
899checking for cospi in -lsunmath... no
900checking for atanpi... no
901checking for atan2pi... no
902checking for cospi... no
903checking for exp10... yes
904checking for pown... no
905checking for sinpi... no
906checking for tanpi... no
907checking for __cospi... no
908checking for __sinpi... no
909checking for __tanpi... no
910checking for fseeko... yes
911checking for ftello... yes
912checking for matherr... yes
913checking whether fcntl exists and is declared... yes
914checking whether getgrgid exists and is declared... yes
915checking whether getpwuid exists and is declared... yes
916checking whether kill exists and is declared... yes
917checking whether sigaction exists and is declared... yes
918checking whether sigaltstack exists and is declared... yes
919checking whether sigemptyset exists and is declared... yes
920checking whether fdopen exists and is declared... yes
921checking whether popen exists and is declared... yes
922checking whether getline exists and is declared... yes
923checking whether setenv exists and is declared... yes
924checking whether unsetenv exists and is declared... yes
925checking whether getrlimit exists and is declared... yes
926checking whether getrusage exists and is declared... yes
927checking whether getpriority exists and is declared... yes
928checking whether chmod exists and is declared... yes
929checking whether mkfifo exists and is declared... yes
930checking whether stat exists and is declared... yes
931checking whether umask exists and is declared... yes
932checking whether gettimeofday exists and is declared... yes
933checking whether utimes exists and is declared... yes
934checking whether times exists and is declared... yes
935checking whether gmtime_r exists and is declared... yes
936checking whether localtime_r exists and is declared... yes
937checking whether nl_langinfo exists and is declared... yes
938checking whether access exists and is declared... yes
939checking whether chdir exists and is declared... yes
940checking whether execv exists and is declared... yes
941checking whether ftruncate exists and is declared... yes
942checking whether getcwd exists and is declared... yes
943checking whether geteuid exists and is declared... yes
944checking whether getuid exists and is declared... yes
945checking whether link exists and is declared... yes
946checking whether readlink exists and is declared... yes
947checking whether symlink exists and is declared... yes
948checking whether sysconf exists and is declared... yes
949checking whether sched_setaffinity exists and is declared... no
950checking whether sched_getaffinity exists and is declared... no
951checking whether utime exists and is declared... yes
952checking for clock_gettime in -lrt... yes
953checking whether clock_gettime exists and is declared... yes
954checking whether timespec_get exists and is declared... no
955checking for putenv... yes
956checking whether putenv is declared... yes
957checking for vasprintf... yes
958checking whether vasprintf is declared... yes
959checking for mempcpy... yes
960checking for realpath... yes
961checking whether realpath is declared... yes
962checking whether glob exists and is declared... yes
963checking for isnan... yes
964checking whether isfinite is declared... yes
965checking whether isnan is declared... yes
966checking whether you have IEEE 754 floating-point arithmetic... yes
967checking whether putenv("FOO") can unset an environment variable... yes
968checking whether putenv("FOO=") can unset an environment variable... no
969checking for nl_langinfo and CODESET... yes
970checking for mkdtemp... yes
971checking for strdup... yes
972checking for strncasecmp... yes
973checking whether mkdtemp is declared... yes
974checking whether strdup is declared... yes
975checking whether strncasecmp is declared... yes
976checking for library containing connect... none required
977checking for library containing gethostbyname... none required
978checking for library containing xdr_string... no
979checking for __setfpucw... no
980checking for working calloc... yes
981checking for working isfinite... yes
982checking for working log1p... yes
983checking whether ftell works correctly on files opened for append... yes
984checking for working sigaction... yes
985checking whether mktime sets errno... no
986checking whether mktime works correctly outside 1902-2037... yes
987checking complex.h usability... yes
988checking complex.h presence... yes
989checking for complex.h... yes
990checking for double complex... yes
991checking whether C99 double complex is supported... yes
992checking whether cabs exists and is declared... yes
993checking whether carg exists and is declared... yes
994checking whether cexp exists and is declared... yes
995checking whether clog exists and is declared... yes
996checking whether csqrt exists and is declared... yes
997checking whether cpow exists and is declared... yes
998checking whether ccos exists and is declared... yes
999checking whether csin exists and is declared... yes
1000checking whether ctan exists and is declared... yes
1001checking whether cacos exists and is declared... yes
1002checking whether casin exists and is declared... yes
1003checking whether catan exists and is declared... yes
1004checking whether ccosh exists and is declared... yes
1005checking whether csinh exists and is declared... yes
1006checking whether ctanh exists and is declared... yes
1007checking whether 'struct tm' includes tm_zone... yes
1008checking whether 'struct tm' includes tm_gmtoff... yes
1009checking for dgemm_ in -L/home/Sebastien/sage33/sage/local/lib -lopenblas... yes
1010checking whether double complex BLAS can be used... yes
1011checking whether the BLAS is complete... yes
1012checking for dpstrf_... yes
1013checking iconv.h usability... yes
1014checking iconv.h presence... yes
1015checking for iconv.h... yes
1016checking for iconv... in libiconv
1017checking whether iconv accepts "UTF-8", "latin1", "ASCII" and "UCS-*"... yes
1018checking for iconvlist... yes
1019checking for iconv... yes
1020checking for iconv declaration...
1021         extern size_t iconv (iconv_t cd, char * *inbuf, size_t *inbytesleft, char * *outbuf, size_t *outbytesleft);
1022checking wchar.h usability... yes
1023checking wchar.h presence... yes
1024checking for wchar.h... yes
1025checking wctype.h usability... yes
1026checking wctype.h presence... yes
1027checking for wctype.h... yes
1028checking whether mbrtowc exists and is declared... yes
1029checking whether wcrtomb exists and is declared... yes
1030checking whether wcscoll exists and is declared... yes
1031checking whether wcsftime exists and is declared... yes
1032checking whether wcstod exists and is declared... yes
1033checking whether mbstowcs exists and is declared... yes
1034checking whether wcstombs exists and is declared... yes
1035checking whether wctrans exists and is declared... yes
1036checking whether iswblank exists and is declared... yes
1037checking whether wctype exists and is declared... yes
1038checking whether iswctype exists and is declared... yes
1039checking for wctrans_t... yes
1040checking for mbstate_t... yes
1041checking for ICU... no
1042checking for X... disabled
1043using X11 ... no
1044checking whether pkg-config knows about cairo and pango... no
1045checking whether pkg-config knows about cairo... no
1046checking for tclConfig.sh... no
1047checking for tclConfig.sh in library (sub)directories... no
1048checking for tkConfig.sh... no
1049checking for tkConfig.sh in library (sub)directories... no
1050checking for tcl.h... no
1051checking for BSD networking... yes
1052checking rpc/types.h usability... no
1053checking rpc/types.h presence... no
1054checking for rpc/types.h... no
1055checking tirpc/rpc/types.h usability... no
1056checking tirpc/rpc/types.h presence... no
1057checking for tirpc/rpc/types.h... no
1058checking for XDR support... no
1059checking for inflateInit2_ in -lz... yes
1060checking zlib.h usability... yes
1061checking zlib.h presence... yes
1062checking for zlib.h... yes
1063checking if zlib version >= 1.2.5... yes
1064checking whether zlib support suffices... yes
1065checking mmap support for zlib... yes
1066checking for BZ2_bzlibVersion in -lbz2... yes
1067checking bzlib.h usability... yes
1068checking bzlib.h presence... yes
1069checking for bzlib.h... yes
1070checking if bzip2 version >= 1.0.6... yes
1071checking whether bzip2 support suffices... yes
1072checking for lzma_version_number in -llzma... yes
1073checking lzma.h usability... yes
1074checking lzma.h presence... yes
1075checking for lzma.h... yes
1076checking if lzma version >= 5.0.3... yes
1077checking for pcre_fullinfo in -lpcre... yes
1078checking pcre.h usability... yes
1079checking pcre.h presence... yes
1080checking for pcre.h... yes
1081checking pcre/pcre.h usability... no
1082checking pcre/pcre.h presence... no
1083checking for pcre/pcre.h... no
1084checking if PCRE version >= 8.10, < 10.0 and has UTF-8 support... yes
1085checking if PCRE version >= 8.32... yes
1086checking whether PCRE support suffices... yes
1087checking for curl-config... /home/Sebastien/sage33/sage/local/bin/curl-config
1088checking libcurl version ... 7.53.1
1089checking curl/curl.h usability... yes
1090checking curl/curl.h presence... yes
1091checking for curl/curl.h... yes
1092checking if libcurl is version 7 and >= 7.28.0... yes
1093checking if jpeglib version >= 6b... no
1094checking if libpng version >= 1.2.7... yes
1095checking for png_create_write_struct in -lpng... yes
1096checking whether leap seconds are treated according to POSIX... yes
1097checking for inline... inline
1098checking for sys/time.h... (cached) yes
1099checking for stdlib.h... (cached) yes
1100checking for unistd.h... (cached) yes
1101checking for sys/param.h... (cached) yes
1102checking for struct stat.st_atim.tv_nsec... yes
1103checking whether struct stat.st_atim is of type struct timespec... yes
1104checking for setitimer... yes
1105checking for special C compiler options needed for large files... no
1106checking for _FILE_OFFSET_BITS value needed for large files... no
1107checking for _LARGEFILE_SOURCE value needed for large files... no
1108checking whether KERN_USRSTACK sysctl is supported... no
1109checking for lpr... no
1110checking for lp... no
1111checking for paperconf... false
1112checking whether we are using the GNU Fortran compiler... yes
1113checking whether gfortran accepts -g... yes
1114checking if libtool supports shared libraries... yes
1115checking whether to build shared libraries... yes
1116checking whether to build static libraries... no
1117checking for gfortran option to produce PIC... -DDLL_EXPORT
1118checking if gfortran PIC flag -DDLL_EXPORT works... yes
1119checking if gfortran static flag -static works... no
1120checking if gfortran supports -c -o file.o... yes
1121checking if gfortran supports -c -o file.o... (cached) yes
1122checking whether the gfortran linker (ld) supports shared libraries... yes
1123checking dynamic linker characteristics... Win32 ld.exe
1124checking how to hardcode library paths into programs... immediate
1125checking for Fortran flag to compile .f90 files... none
1126checking for Fortran flag to compile .f95 files... none
1127checking for gfortran option to support OpenMP... -fopenmp
1128checking for recommended packages... yes
1129checking whether NLS is requested... yes
1130
1131Configuring src/extra/intl directory
1132checking for a thread-safe mkdir -p... /usr/bin/mkdir -p
1133checking whether we are using the GNU C Library 2 or newer... no
1134checking for ranlib... (cached) ranlib
1135checking for simple visibility declarations... yes
1136checking for stdint.h... yes
1137checking for getpagesize... yes
1138checking for working mmap... yes
1139checking whether integer division by zero raises SIGFPE... yes
1140checking for inttypes.h... yes
1141checking for unsigned long long int... yes
1142checking for inttypes.h... (cached) yes
1143checking whether the inttypes.h PRIxNN macros are broken... no
1144checking for ld used by gcc... ld
1145checking if the linker (ld) is GNU ld... yes
1146checking for shared library run path origin... done
1147checking whether imported symbols can be declared weak... no
1148checking for multithread API to use... none
1149checking argz.h usability... yes
1150checking argz.h presence... yes
1151checking for argz.h... yes
1152checking for inttypes.h... (cached) yes
1153checking for limits.h... (cached) yes
1154checking for unistd.h... (cached) yes
1155checking for sys/param.h... (cached) yes
1156checking for getcwd... yes
1157checking for getegid... yes
1158checking for geteuid... yes
1159checking for getgid... yes
1160checking for getuid... yes
1161checking for mempcpy... (cached) yes
1162checking for munmap... yes
1163checking for stpcpy... yes
1164checking for strcasecmp... yes
1165checking for strdup... (cached) yes
1166checking for strtoul... yes
1167checking for tsearch... yes
1168checking for argz_count... yes
1169checking for argz_stringify... yes
1170checking for argz_next... yes
1171checking for __fsetlocking... yes
1172checking whether feof_unlocked is declared... yes
1173checking whether fgets_unlocked is declared... yes
1174checking for iconv... (cached) yes
1175checking for iconv declaration... (cached)
1176         extern size_t iconv (iconv_t cd, char * *inbuf, size_t *inbytesleft, char * *outbuf, size_t *outbytesleft);
1177checking for NL_LOCALE_NAME macro... no
1178checking for bison... no
1179checking for long long int... yes
1180checking for long double... yes
1181checking for wchar_t... yes
1182checking for wint_t... yes
1183checking for intmax_t... yes
1184checking whether printf() supports POSIX/XSI format strings... yes
1185checking whether we are using the GNU C Library 2.1 or newer... no
1186checking for stdint.h... (cached) yes
1187checking for SIZE_MAX... yes
1188checking for stdint.h... (cached) yes
1189checking for CFPreferencesCopyAppValue... no
1190checking for CFLocaleCopyCurrent... no
1191checking for ptrdiff_t... yes
1192checking stddef.h usability... yes
1193checking stddef.h presence... yes
1194checking for stddef.h... yes
1195checking for stdlib.h... (cached) yes
1196checking for string.h... (cached) yes
1197checking for asprintf... yes
1198checking for fwprintf... yes
1199checking for putenv... (cached) yes
1200checking for setenv... yes
1201checking for setlocale... yes
1202checking for snprintf... yes
1203checking for wcslen... yes
1204checking whether _snprintf is declared... no
1205checking whether _snwprintf is declared... no
1206checking whether getc_unlocked is declared... yes
1207checking for nl_langinfo and CODESET... (cached) yes
1208checking for LC_MESSAGES... yes
1209checking for CFPreferencesCopyAppValue... (cached) no
1210checking for CFLocaleCopyCurrent... (cached) no
1211checking whether included gettext is requested... no
1212checking for GNU gettext in libc... no
1213checking for GNU gettext in libintl... yes
1214checking whether to use NLS... yes
1215checking where the gettext function comes from... external libintl
1216checking how to link with libintl... -lintl
1217Finished configuring src/extra/intl directory
1218
1219using as R_SHELL for scripts ... /bin/sh
1220configure: creating ./config.status
1221config.status: creating Makeconf
1222config.status: creating Makefile
1223config.status: creating doc/Makefile
1224config.status: creating doc/html/Makefile
1225config.status: creating doc/manual/Makefile
1226config.status: creating etc/Makefile
1227config.status: creating etc/Makeconf
1228config.status: creating etc/Renviron
1229config.status: creating etc/javaconf
1230config.status: creating etc/ldpaths
1231config.status: creating m4/Makefile
1232config.status: creating po/Makefile
1233config.status: creating share/Makefile
1234config.status: creating src/Makefile
1235config.status: creating src/appl/Makefile
1236config.status: creating src/extra/Makefile
1237config.status: creating src/extra/blas/Makefile
1238config.status: creating src/extra/intl/Makefile
1239config.status: creating src/extra/tre/Makefile
1240config.status: creating src/extra/tzone/Makefile
1241config.status: creating src/extra/xdr/Makefile
1242config.status: creating src/include/Makefile
1243config.status: creating src/include/Rmath.h0
1244config.status: creating src/include/R_ext/Makefile
1245config.status: creating src/library/Recommended/Makefile
1246config.status: creating src/library/Makefile
1247config.status: creating src/library/base/DESCRIPTION
1248config.status: creating src/library/base/Makefile
1249config.status: creating src/library/compiler/DESCRIPTION
1250config.status: creating src/library/compiler/Makefile
1251config.status: creating src/library/datasets/DESCRIPTION
1252config.status: creating src/library/datasets/Makefile
1253config.status: creating src/library/graphics/DESCRIPTION
1254config.status: creating src/library/graphics/Makefile
1255config.status: creating src/library/graphics/src/Makefile
1256config.status: creating src/library/grDevices/DESCRIPTION
1257config.status: creating src/library/grDevices/Makefile
1258config.status: creating src/library/grDevices/src/Makefile
1259config.status: creating src/library/grDevices/src/cairo/Makefile
1260config.status: creating src/library/grid/DESCRIPTION
1261config.status: creating src/library/grid/Makefile
1262config.status: creating src/library/grid/src/Makefile
1263config.status: creating src/library/methods/DESCRIPTION
1264config.status: creating src/library/methods/Makefile
1265config.status: creating src/library/methods/src/Makefile
1266config.status: creating src/library/parallel/DESCRIPTION
1267config.status: creating src/library/parallel/Makefile
1268config.status: creating src/library/parallel/src/Makefile
1269config.status: creating src/library/profile/Makefile
1270config.status: creating src/library/stats/DESCRIPTION
1271config.status: creating src/library/stats/Makefile
1272config.status: creating src/library/stats/src/Makefile
1273config.status: creating src/library/stats4/DESCRIPTION
1274config.status: creating src/library/stats4/Makefile
1275config.status: creating src/library/splines/DESCRIPTION
1276config.status: creating src/library/splines/Makefile
1277config.status: creating src/library/splines/src/Makefile
1278config.status: creating src/library/tcltk/DESCRIPTION
1279config.status: creating src/library/tcltk/Makefile
1280config.status: creating src/library/tcltk/src/Makefile
1281config.status: creating src/library/tools/DESCRIPTION
1282config.status: creating src/library/tools/Makefile
1283config.status: creating src/library/tools/src/Makefile
1284config.status: creating src/library/translations/DESCRIPTION
1285config.status: creating src/library/translations/Makefile
1286config.status: creating src/library/utils/DESCRIPTION
1287config.status: creating src/library/utils/Makefile
1288config.status: creating src/library/utils/src/Makefile
1289config.status: creating src/main/Makefile
1290config.status: creating src/modules/Makefile
1291config.status: creating src/modules/X11/Makefile
1292config.status: creating src/modules/internet/Makefile
1293config.status: creating src/modules/lapack/Makefile
1294config.status: creating src/nmath/Makefile
1295config.status: creating src/nmath/standalone/Makefile
1296config.status: creating src/scripts/Makefile
1297config.status: creating src/scripts/R.sh
1298config.status: creating src/scripts/Rcmd
1299config.status: creating src/scripts/f77_f2c
1300config.status: creating src/scripts/javareconf
1301config.status: creating src/scripts/mkinstalldirs
1302config.status: creating src/scripts/pager
1303config.status: creating src/scripts/rtags
1304config.status: creating src/unix/Makefile
1305config.status: creating tests/Makefile
1306config.status: creating tests/Embedding/Makefile
1307config.status: creating tests/Examples/Makefile
1308config.status: creating tools/Makefile
1309config.status: creating src/include/config.h
1310config.status: executing libtool commands
1311config.status: executing stamp-h commands
1312
1313R is now configured for x86_64-unknown-cygwin
1314
1315  Source directory:          .
1316  Installation directory:    /home/Sebastien/sage33/sage/local
1317
1318  C compiler:                gcc  -g -O2
1319  Fortran 77 compiler:       gfortran  -g -O2
1320
1321  C++ compiler:              g++  -g -O2
1322  C++11 compiler:            g++  -std=c++11 -g -O2
1323  Fortran 90/95 compiler:    gfortran -g -O2
1324  Obj-C compiler:             
1325
1326  Interfaces supported:     
1327  External libraries:        readline, BLAS(OpenBLAS), LAPACK(generic), curl
1328  Additional capabilities:   PNG, NLS
1329  Options enabled:           shared R library, R profiling
1330
1331  Capabilities skipped:      JPEG, TIFF, cairo, ICU
1332  Options not enabled:       shared BLAS, memory profiling
1333
1334  Recommended packages:      yes
1335
1336configure: WARNING: neither inconsolata.sty nor zi4.sty found: PDF vignettes and package manuals will not be rendered optimally
1337configure: WARNING: I could not determine a browser
1338configure: WARNING: I could not determine a PDF viewer
1339make[3]: Entering directory '/home/Sebastien/sage33/sage/local/var/tmp/sage/build/r-3.3.3.p1/src'
1340make[4]: Entering directory '/home/Sebastien/sage33/sage/local/var/tmp/sage/build/r-3.3.3.p1/src/m4'
1341make[4]: Nothing to be done for 'R'.
1342make[4]: Leaving directory '/home/Sebastien/sage33/sage/local/var/tmp/sage/build/r-3.3.3.p1/src/m4'
1343make[4]: Entering directory '/home/Sebastien/sage33/sage/local/var/tmp/sage/build/r-3.3.3.p1/src/tools'
1344make[4]: Nothing to be done for 'R'.
1345make[4]: Leaving directory '/home/Sebastien/sage33/sage/local/var/tmp/sage/build/r-3.3.3.p1/src/tools'
1346make[4]: Entering directory '/home/Sebastien/sage33/sage/local/var/tmp/sage/build/r-3.3.3.p1/src/doc'
1347make[5]: Entering directory '/home/Sebastien/sage33/sage/local/var/tmp/sage/build/r-3.3.3.p1/src/doc/html'
1348make[5]: Leaving directory '/home/Sebastien/sage33/sage/local/var/tmp/sage/build/r-3.3.3.p1/src/doc/html'
1349make[5]: Entering directory '/home/Sebastien/sage33/sage/local/var/tmp/sage/build/r-3.3.3.p1/src/doc/manual'
1350make[5]: Nothing to be done for 'R'.
1351make[5]: Leaving directory '/home/Sebastien/sage33/sage/local/var/tmp/sage/build/r-3.3.3.p1/src/doc/manual'
1352make[4]: Leaving directory '/home/Sebastien/sage33/sage/local/var/tmp/sage/build/r-3.3.3.p1/src/doc'
1353make[4]: Entering directory '/home/Sebastien/sage33/sage/local/var/tmp/sage/build/r-3.3.3.p1/src/etc'
1354make[4]: Leaving directory '/home/Sebastien/sage33/sage/local/var/tmp/sage/build/r-3.3.3.p1/src/etc'
1355make[4]: Entering directory '/home/Sebastien/sage33/sage/local/var/tmp/sage/build/r-3.3.3.p1/src/share'
1356make[4]: Leaving directory '/home/Sebastien/sage33/sage/local/var/tmp/sage/build/r-3.3.3.p1/src/share'
1357make[4]: Entering directory '/home/Sebastien/sage33/sage/local/var/tmp/sage/build/r-3.3.3.p1/src/src'
1358make[5]: Entering directory '/home/Sebastien/sage33/sage/local/var/tmp/sage/build/r-3.3.3.p1/src/src/scripts'
1359creating src/scripts/R.fe
1360make[6]: Entering directory '/home/Sebastien/sage33/sage/local/var/tmp/sage/build/r-3.3.3.p1/src/src/scripts'
1361mkdir -p -- ../../bin
1362make[6]: Leaving directory '/home/Sebastien/sage33/sage/local/var/tmp/sage/build/r-3.3.3.p1/src/src/scripts'
1363make[5]: Leaving directory '/home/Sebastien/sage33/sage/local/var/tmp/sage/build/r-3.3.3.p1/src/src/scripts'
1364make[5]: Entering directory '/home/Sebastien/sage33/sage/local/var/tmp/sage/build/r-3.3.3.p1/src/src/include'
1365mkdir -p -- ../../include
1366make[6]: Entering directory '/home/Sebastien/sage33/sage/local/var/tmp/sage/build/r-3.3.3.p1/src/src/include/R_ext'
1367mkdir -p -- ../../../include/R_ext
1368make[6]: Leaving directory '/home/Sebastien/sage33/sage/local/var/tmp/sage/build/r-3.3.3.p1/src/src/include/R_ext'
1369make[5]: Leaving directory '/home/Sebastien/sage33/sage/local/var/tmp/sage/build/r-3.3.3.p1/src/src/include'
1370make[5]: Entering directory '/home/Sebastien/sage33/sage/local/var/tmp/sage/build/r-3.3.3.p1/src/src/extra'
1371make[6]: Entering directory '/home/Sebastien/sage33/sage/local/var/tmp/sage/build/r-3.3.3.p1/src/src/extra/xdr'
1372make[6]: Entering directory '/home/Sebastien/sage33/sage/local/var/tmp/sage/build/r-3.3.3.p1/src/src/extra/tre'
1373making xdr.d from xdr.c
1374making xdr_float.d from xdr_float.c
1375make[7]: Entering directory '/home/Sebastien/sage33/sage/local/var/tmp/sage/build/r-3.3.3.p1/src/src/extra/tre'
1376making regcomp.d from regcomp.c
1377making xdr_mem.d from xdr_mem.c
1378making xdr_stdio.d from xdr_stdio.c
1379making regerror.d from regerror.c
1380making regexec.d from regexec.c
1381making tre-ast.d from tre-ast.c
1382make[7]: Entering directory '/home/Sebastien/sage33/sage/local/var/tmp/sage/build/r-3.3.3.p1/src/src/extra/xdr'
1383gcc -I. -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2    -c xdr.c -o xdr.o
1384gcc -I. -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2    -c xdr_float.c -o xdr_float.o
1385making tre-compile.d from tre-compile.c
1386making tre-match-approx.d from tre-match-approx.c
1387gcc -I. -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2    -c xdr_mem.c -o xdr_mem.o
1388making tre-match-backtrack.d from tre-match-backtrack.c
1389making tre-match-parallel.d from tre-match-parallel.c
1390gcc -I. -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2    -c xdr_stdio.c -o xdr_stdio.o
1391making tre-mem.d from tre-mem.c
1392making tre-parse.d from tre-parse.c
1393making tre-stack.d from tre-stack.c
1394making xmalloc.d from xmalloc.c
1395ar -cr libxdr.a xdr.o xdr_float.o xdr_mem.o xdr_stdio.o
1396ranlib libxdr.a
1397make[7]: Leaving directory '/home/Sebastien/sage33/sage/local/var/tmp/sage/build/r-3.3.3.p1/src/src/extra/xdr'
1398make[6]: Leaving directory '/home/Sebastien/sage33/sage/local/var/tmp/sage/build/r-3.3.3.p1/src/src/extra/xdr'
1399make[7]: Leaving directory '/home/Sebastien/sage33/sage/local/var/tmp/sage/build/r-3.3.3.p1/src/src/extra/tre'
1400make[7]: Entering directory '/home/Sebastien/sage33/sage/local/var/tmp/sage/build/r-3.3.3.p1/src/src/extra/tre'
1401gcc -I. -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2    -c regcomp.c -o regcomp.o
1402gcc -I. -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2    -c regerror.c -o regerror.o
1403gcc -I. -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2    -c regexec.c -o regexec.o
1404gcc -I. -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2    -c tre-ast.c -o tre-ast.o
1405gcc -I. -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2    -c tre-compile.c -o tre-compile.o
1406gcc -I. -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2    -c tre-match-approx.c -o tre-match-approx.o
1407gcc -I. -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2    -c tre-match-backtrack.c -o tre-match-backtrack.o
1408gcc -I. -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2    -c tre-match-parallel.c -o tre-match-parallel.o
1409gcc -I. -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2    -c tre-mem.c -o tre-mem.o
1410gcc -I. -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2    -c tre-parse.c -o tre-parse.o
1411gcc -I. -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2    -c tre-stack.c -o tre-stack.o
1412gcc -I. -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2    -c xmalloc.c -o xmalloc.o
1413ar -cr libtre.a regcomp.o regerror.o regexec.o tre-ast.o tre-compile.o tre-match-approx.o tre-match-backtrack.o tre-match-parallel.o tre-mem.o tre-parse.o tre-stack.o xmalloc.o
1414ranlib libtre.a
1415make[7]: Leaving directory '/home/Sebastien/sage33/sage/local/var/tmp/sage/build/r-3.3.3.p1/src/src/extra/tre'
1416make[6]: Leaving directory '/home/Sebastien/sage33/sage/local/var/tmp/sage/build/r-3.3.3.p1/src/src/extra/tre'
1417make[5]: Leaving directory '/home/Sebastien/sage33/sage/local/var/tmp/sage/build/r-3.3.3.p1/src/src/extra'
1418make[5]: Entering directory '/home/Sebastien/sage33/sage/local/var/tmp/sage/build/r-3.3.3.p1/src/src/appl'
1419making integrate.d from integrate.c
1420making interv.d from interv.c
1421making maxcol.d from maxcol.c
1422making optim.d from optim.c
1423making pretty.d from pretty.c
1424making uncmin.d from uncmin.c
1425make[6]: Entering directory '/home/Sebastien/sage33/sage/local/var/tmp/sage/build/r-3.3.3.p1/src/src/appl'
1426gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c integrate.c -o integrate.o
1427gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c interv.c -o interv.o
1428gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c maxcol.c -o maxcol.o
1429gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c optim.c -o optim.o
1430gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c pretty.c -o pretty.o
1431gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c uncmin.c -o uncmin.o
1432gfortran  -fopenmp -fpic  -g -O2  -c dchdc.f -o dchdc.o
1433gfortran  -fopenmp -fpic  -g -O2  -c dpbfa.f -o dpbfa.o
1434gfortran  -fopenmp -fpic  -g -O2  -c dpbsl.f -o dpbsl.o
1435gfortran  -fopenmp -fpic  -g -O2  -c dpoco.f -o dpoco.o
1436gfortran  -fopenmp -fpic  -g -O2  -c dpodi.f -o dpodi.o
1437gfortran  -fopenmp -fpic  -g -O2  -c dpofa.f -o dpofa.o
1438gfortran  -fopenmp -fpic  -g -O2  -c dposl.f -o dposl.o
1439gfortran  -fopenmp -fpic  -g -O2  -c dqrdc.f -o dqrdc.o
1440gfortran  -fopenmp -fpic  -g -O2  -c dqrdc2.f -o dqrdc2.o
1441gfortran  -fopenmp -fpic  -g -O2  -c dqrls.f -o dqrls.o
1442gfortran  -fopenmp -fpic  -g -O2  -c dqrsl.f -o dqrsl.o
1443gfortran  -fopenmp -fpic  -g -O2  -c dqrutl.f -o dqrutl.o
1444gfortran  -fopenmp -fpic  -g -O2  -c dsvdc.f -o dsvdc.o
1445gfortran  -fopenmp -fpic  -g -O2  -c dtrco.f -o dtrco.o
1446gfortran  -fopenmp -fpic  -g -O2  -c dtrsl.f -o dtrsl.o
1447ar -cr libappl.a integrate.o interv.o maxcol.o optim.o pretty.o uncmin.o dchdc.o dpbfa.o dpbsl.o dpoco.o dpodi.o dpofa.o dposl.o dqrdc.o dqrdc2.o dqrls.o dqrsl.o dqrutl.o dsvdc.o dtrco.o dtrsl.o
1448ranlib libappl.a
1449make[6]: Leaving directory '/home/Sebastien/sage33/sage/local/var/tmp/sage/build/r-3.3.3.p1/src/src/appl'
1450make[5]: Leaving directory '/home/Sebastien/sage33/sage/local/var/tmp/sage/build/r-3.3.3.p1/src/src/appl'
1451make[5]: Entering directory '/home/Sebastien/sage33/sage/local/var/tmp/sage/build/r-3.3.3.p1/src/src/nmath'
1452making mlutils.d from mlutils.c
1453making d1mach.d from d1mach.c
1454making i1mach.d from i1mach.c
1455making fmax2.d from fmax2.c
1456making fmin2.d from fmin2.c
1457making fprec.d from fprec.c
1458making fround.d from fround.c
1459making ftrunc.d from ftrunc.c
1460making sign.d from sign.c
1461making fsign.d from fsign.c
1462making imax2.d from imax2.c
1463making imin2.d from imin2.c
1464making chebyshev.d from chebyshev.c
1465making log1p.d from log1p.c
1466making expm1.d from expm1.c
1467making lgammacor.d from lgammacor.c
1468making gammalims.d from gammalims.c
1469making stirlerr.d from stirlerr.c
1470making bd0.d from bd0.c
1471making gamma.d from gamma.c
1472making lgamma.d from lgamma.c
1473making gamma_cody.d from gamma_cody.c
1474making beta.d from beta.c
1475making lbeta.d from lbeta.c
1476making polygamma.d from polygamma.c
1477making cospi.d from cospi.c
1478making bessel_i.d from bessel_i.c
1479making bessel_j.d from bessel_j.c
1480making bessel_k.d from bessel_k.c
1481making bessel_y.d from bessel_y.c
1482making choose.d from choose.c
1483making snorm.d from snorm.c
1484making sexp.d from sexp.c
1485making dgamma.d from dgamma.c
1486making pgamma.d from pgamma.c
1487making qgamma.d from qgamma.c
1488making rgamma.d from rgamma.c
1489making dbeta.d from dbeta.c
1490making pbeta.d from pbeta.c
1491making qbeta.d from qbeta.c
1492making rbeta.d from rbeta.c
1493making dunif.d from dunif.c
1494making punif.d from punif.c
1495making qunif.d from qunif.c
1496making runif.d from runif.c
1497making dnorm.d from dnorm.c
1498making pnorm.d from pnorm.c
1499making qnorm.d from qnorm.c
1500making rnorm.d from rnorm.c
1501making dlnorm.d from dlnorm.c
1502making plnorm.d from plnorm.c
1503making qlnorm.d from qlnorm.c
1504making rlnorm.d from rlnorm.c
1505making df.d from df.c
1506making pf.d from pf.c
1507making qf.d from qf.c
1508making rf.d from rf.c
1509making dnf.d from dnf.c
1510making dt.d from dt.c
1511making pt.d from pt.c
1512making qt.d from qt.c
1513making rt.d from rt.c
1514making dnt.d from dnt.c
1515making dchisq.d from dchisq.c
1516making pchisq.d from pchisq.c
1517making qchisq.d from qchisq.c
1518making rchisq.d from rchisq.c
1519making rnchisq.d from rnchisq.c
1520making dbinom.d from dbinom.c
1521making pbinom.d from pbinom.c
1522making qbinom.d from qbinom.c
1523making rbinom.d from rbinom.c
1524making rmultinom.d from rmultinom.c
1525making dcauchy.d from dcauchy.c
1526making pcauchy.d from pcauchy.c
1527making qcauchy.d from qcauchy.c
1528making rcauchy.d from rcauchy.c
1529making dexp.d from dexp.c
1530making pexp.d from pexp.c
1531making qexp.d from qexp.c
1532making rexp.d from rexp.c
1533making dgeom.d from dgeom.c
1534making pgeom.d from pgeom.c
1535making qgeom.d from qgeom.c
1536making rgeom.d from rgeom.c
1537making dhyper.d from dhyper.c
1538making phyper.d from phyper.c
1539making qhyper.d from qhyper.c
1540making rhyper.d from rhyper.c
1541making dnbinom.d from dnbinom.c
1542making pnbinom.d from pnbinom.c
1543making qnbinom.d from qnbinom.c
1544making rnbinom.d from rnbinom.c
1545making dpois.d from dpois.c
1546making ppois.d from ppois.c
1547making qpois.d from qpois.c
1548making rpois.d from rpois.c
1549making dweibull.d from dweibull.c
1550making pweibull.d from pweibull.c
1551making qweibull.d from qweibull.c
1552making rweibull.d from rweibull.c
1553making dlogis.d from dlogis.c
1554making plogis.d from plogis.c
1555making qlogis.d from qlogis.c
1556making rlogis.d from rlogis.c
1557making dnchisq.d from dnchisq.c
1558making pnchisq.d from pnchisq.c
1559making qnchisq.d from qnchisq.c
1560making dnbeta.d from dnbeta.c
1561making pnbeta.d from pnbeta.c
1562making qnbeta.d from qnbeta.c
1563making pnf.d from pnf.c
1564making pnt.d from pnt.c
1565making qnf.d from qnf.c
1566making qnt.d from qnt.c
1567making ptukey.d from ptukey.c
1568making qtukey.d from qtukey.c
1569making toms708.d from toms708.c
1570making wilcox.d from wilcox.c
1571making signrank.d from signrank.c
1572make[6]: Entering directory '/home/Sebastien/sage33/sage/local/var/tmp/sage/build/r-3.3.3.p1/src/src/nmath'
1573gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c mlutils.c -o mlutils.o
1574gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c d1mach.c -o d1mach.o
1575gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c i1mach.c -o i1mach.o
1576gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c fmax2.c -o fmax2.o
1577gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c fmin2.c -o fmin2.o
1578gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c fprec.c -o fprec.o
1579gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c fround.c -o fround.o
1580gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c ftrunc.c -o ftrunc.o
1581gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c sign.c -o sign.o
1582gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c fsign.c -o fsign.o
1583gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c imax2.c -o imax2.o
1584gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c imin2.c -o imin2.o
1585gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c chebyshev.c -o chebyshev.o
1586gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c log1p.c -o log1p.o
1587gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c expm1.c -o expm1.o
1588gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c lgammacor.c -o lgammacor.o
1589gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c gammalims.c -o gammalims.o
1590gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c stirlerr.c -o stirlerr.o
1591gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c bd0.c -o bd0.o
1592gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c gamma.c -o gamma.o
1593gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c lgamma.c -o lgamma.o
1594gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c gamma_cody.c -o gamma_cody.o
1595gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c beta.c -o beta.o
1596gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c lbeta.c -o lbeta.o
1597gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c polygamma.c -o polygamma.o
1598gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c cospi.c -o cospi.o
1599gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c bessel_i.c -o bessel_i.o
1600gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c bessel_j.c -o bessel_j.o
1601gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c bessel_k.c -o bessel_k.o
1602gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c bessel_y.c -o bessel_y.o
1603gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c choose.c -o choose.o
1604gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c snorm.c -o snorm.o
1605gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c sexp.c -o sexp.o
1606gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c dgamma.c -o dgamma.o
1607gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c pgamma.c -o pgamma.o
1608gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c qgamma.c -o qgamma.o
1609gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c rgamma.c -o rgamma.o
1610gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c dbeta.c -o dbeta.o
1611gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c pbeta.c -o pbeta.o
1612gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c qbeta.c -o qbeta.o
1613gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c rbeta.c -o rbeta.o
1614gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c dunif.c -o dunif.o
1615gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c punif.c -o punif.o
1616gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c qunif.c -o qunif.o
1617gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c runif.c -o runif.o
1618gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c dnorm.c -o dnorm.o
1619gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c pnorm.c -o pnorm.o
1620gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c qnorm.c -o qnorm.o
1621gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c rnorm.c -o rnorm.o
1622gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c dlnorm.c -o dlnorm.o
1623gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c plnorm.c -o plnorm.o
1624gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c qlnorm.c -o qlnorm.o
1625gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c rlnorm.c -o rlnorm.o
1626gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c df.c -o df.o
1627gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c pf.c -o pf.o
1628gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c qf.c -o qf.o
1629gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c rf.c -o rf.o
1630gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c dnf.c -o dnf.o
1631gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c dt.c -o dt.o
1632gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c pt.c -o pt.o
1633gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c qt.c -o qt.o
1634gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c rt.c -o rt.o
1635gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c dnt.c -o dnt.o
1636gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c dchisq.c -o dchisq.o
1637gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c pchisq.c -o pchisq.o
1638gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c qchisq.c -o qchisq.o
1639gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c rchisq.c -o rchisq.o
1640gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c rnchisq.c -o rnchisq.o
1641gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c dbinom.c -o dbinom.o
1642gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c pbinom.c -o pbinom.o
1643gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c qbinom.c -o qbinom.o
1644gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c rbinom.c -o rbinom.o
1645gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c rmultinom.c -o rmultinom.o
1646gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c dcauchy.c -o dcauchy.o
1647gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c pcauchy.c -o pcauchy.o
1648gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c qcauchy.c -o qcauchy.o
1649gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c rcauchy.c -o rcauchy.o
1650gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c dexp.c -o dexp.o
1651gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c pexp.c -o pexp.o
1652gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c qexp.c -o qexp.o
1653gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c rexp.c -o rexp.o
1654gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c dgeom.c -o dgeom.o
1655gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c pgeom.c -o pgeom.o
1656gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c qgeom.c -o qgeom.o
1657gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c rgeom.c -o rgeom.o
1658gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c dhyper.c -o dhyper.o
1659gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c phyper.c -o phyper.o
1660gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c qhyper.c -o qhyper.o
1661gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c rhyper.c -o rhyper.o
1662gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c dnbinom.c -o dnbinom.o
1663gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c pnbinom.c -o pnbinom.o
1664gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c qnbinom.c -o qnbinom.o
1665gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c rnbinom.c -o rnbinom.o
1666gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c dpois.c -o dpois.o
1667gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c ppois.c -o ppois.o
1668gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c qpois.c -o qpois.o
1669gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c rpois.c -o rpois.o
1670gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c dweibull.c -o dweibull.o
1671gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c pweibull.c -o pweibull.o
1672gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c qweibull.c -o qweibull.o
1673gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c rweibull.c -o rweibull.o
1674gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c dlogis.c -o dlogis.o
1675gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c plogis.c -o plogis.o
1676gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c qlogis.c -o qlogis.o
1677gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c rlogis.c -o rlogis.o
1678gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c dnchisq.c -o dnchisq.o
1679gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c pnchisq.c -o pnchisq.o
1680gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c qnchisq.c -o qnchisq.o
1681gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c dnbeta.c -o dnbeta.o
1682gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c pnbeta.c -o pnbeta.o
1683gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c qnbeta.c -o qnbeta.o
1684gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c pnf.c -o pnf.o
1685gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c pnt.c -o pnt.o
1686gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c qnf.c -o qnf.o
1687gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c qnt.c -o qnt.o
1688gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c ptukey.c -o ptukey.o
1689gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c qtukey.c -o qtukey.o
1690gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c toms708.c -o toms708.o
1691gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c wilcox.c -o wilcox.o
1692gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c signrank.c -o signrank.o
1693ar -cr libnmath.a mlutils.o d1mach.o i1mach.o fmax2.o fmin2.o fprec.o fround.o ftrunc.o sign.o fsign.o imax2.o imin2.o chebyshev.o log1p.o expm1.o lgammacor.o gammalims.o stirlerr.o bd0.o gamma.o lgamma.o gamma_cody.o beta.o lbeta.o polygamma.o cospi.o bessel_i.o bessel_j.o bessel_k.o bessel_y.o choose.o snorm.o sexp.o dgamma.o pgamma.o qgamma.o rgamma.o dbeta.o pbeta.o qbeta.o rbeta.o dunif.o punif.o qunif.o runif.o dnorm.o pnorm.o qnorm.o rnorm.o dlnorm.o plnorm.o qlnorm.o rlnorm.o df.o pf.o qf.o rf.o dnf.o dt.o pt.o qt.o rt.o dnt.o dchisq.o pchisq.o qchisq.o rchisq.o rnchisq.o dbinom.o pbinom.o qbinom.o rbinom.o rmultinom.o dcauchy.o pcauchy.o qcauchy.o rcauchy.o dexp.o pexp.o qexp.o rexp.o dgeom.o pgeom.o qgeom.o rgeom.o dhyper.o phyper.o qhyper.o rhyper.o dnbinom.o pnbinom.o qnbinom.o rnbinom.o dpois.o ppois.o qpois.o rpois.o dweibull.o pweibull.o qweibull.o rweibull.o dlogis.o plogis.o qlogis.o rlogis.o dnchisq.o pnchisq.o qnchisq.o dnbeta.o pnbeta.o qnbeta.o pnf.o pnt.o qnf.o qnt.o ptukey.o qtukey.o toms708.o wilcox.o signrank.o
1694ranlib libnmath.a
1695make[6]: Leaving directory '/home/Sebastien/sage33/sage/local/var/tmp/sage/build/r-3.3.3.p1/src/src/nmath'
1696make[5]: Leaving directory '/home/Sebastien/sage33/sage/local/var/tmp/sage/build/r-3.3.3.p1/src/src/nmath'
1697make[5]: Entering directory '/home/Sebastien/sage33/sage/local/var/tmp/sage/build/r-3.3.3.p1/src/src/unix'
1698config.status: creating src/unix/Makefile
1699making Rembedded.d from Rembedded.c
1700making dynload.d from dynload.c
1701making system.d from system.c
1702making sys-unix.d from sys-unix.c
1703making sys-std.d from sys-std.c
1704making X11.d from X11.c
1705make[6]: Entering directory '/home/Sebastien/sage33/sage/local/var/tmp/sage/build/r-3.3.3.p1/src/src/unix'
1706gcc -I. -I../../src/include -I../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c Rembedded.c -o Rembedded.o
1707gcc -I. -I../../src/include -I../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c dynload.c -o dynload.o
1708gcc -I. -I../../src/include -I../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c system.c -o system.o
1709gcc -I. -I../../src/include -I../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c sys-unix.c -o sys-unix.o
1710gcc -I. -I../../src/include -I../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c sys-std.c -o sys-std.o
1711gcc -I. -I../../src/include -I../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c X11.c -o X11.o
1712ar -cr libunix.a Rembedded.o dynload.o system.o sys-unix.o sys-std.o X11.o
1713ranlib libunix.a
1714make[6]: Leaving directory '/home/Sebastien/sage33/sage/local/var/tmp/sage/build/r-3.3.3.p1/src/src/unix'
1715make[6]: Entering directory '/home/Sebastien/sage33/sage/local/var/tmp/sage/build/r-3.3.3.p1/src/src/unix'
1716gcc -I. -I../../src/include -I../../src/include   -DHAVE_CONFIG_H    -g -O2   -L/home/Sebastien/sage33/sage/local/lib -Wl,-rpath,/home/Sebastien/sage33/sage/local/lib  -DR_HOME='"/home/Sebastien/sage33/sage/local/var/tmp/sage/build/r-3.3.3.p1/src"' \
1717  -o Rscript ./Rscript.c
1718make[6]: Leaving directory '/home/Sebastien/sage33/sage/local/var/tmp/sage/build/r-3.3.3.p1/src/src/unix'
1719make[5]: Leaving directory '/home/Sebastien/sage33/sage/local/var/tmp/sage/build/r-3.3.3.p1/src/src/unix'
1720make[5]: Entering directory '/home/Sebastien/sage33/sage/local/var/tmp/sage/build/r-3.3.3.p1/src/src/main'
1721config.status: creating src/main/Makefile
1722making CommandLineArgs.d from CommandLineArgs.c
1723making Rdynload.d from Rdynload.c
1724making Renviron.d from Renviron.c
1725making RNG.d from RNG.c
1726making agrep.d from agrep.c
1727making apply.d from apply.c
1728making arithmetic.d from arithmetic.c
1729making array.d from array.c
1730making attrib.d from attrib.c
1731making bind.d from bind.c
1732making builtin.d from builtin.c
1733making character.d from character.c
1734making coerce.d from coerce.c
1735making colors.d from colors.c
1736making complex.d from complex.c
1737making connections.d from connections.c
1738making context.d from context.c
1739making cum.d from cum.c
1740making dcf.d from dcf.c
1741making datetime.d from datetime.c
1742making debug.d from debug.c
1743making deparse.d from deparse.c
1744making devices.d from devices.c
1745making dotcode.d from dotcode.c
1746making dounzip.d from dounzip.c
1747making dstruct.d from dstruct.c
1748making duplicate.d from duplicate.c
1749making edit.d from edit.c
1750making engine.d from engine.c
1751making envir.d from envir.c
1752making errors.d from errors.c
1753making eval.d from eval.c
1754making format.d from format.c
1755making gevents.d from gevents.c
1756making gram.d from gram.c
1757making gram-ex.d from gram-ex.c
1758making graphics.d from graphics.c
1759making grep.d from grep.c
1760making identical.d from identical.c
1761making inlined.d from inlined.c
1762making inspect.d from inspect.c
1763making internet.d from internet.c
1764making iosupport.d from iosupport.c
1765making lapack.d from lapack.c
1766making list.d from list.c
1767making localecharset.d from localecharset.c
1768making logic.d from logic.c
1769making main.d from main.c
1770making mapply.d from mapply.c
1771making match.d from match.c
1772making memory.d from memory.c
1773making names.d from names.c
1774making objects.d from objects.c
1775making options.d from options.c
1776making paste.d from paste.c
1777making platform.d from platform.c
1778making plot.d from plot.c
1779making plot3d.d from plot3d.c
1780making plotmath.d from plotmath.c
1781making print.d from print.c
1782making printarray.d from printarray.c
1783making printvector.d from printvector.c
1784making printutils.d from printutils.c
1785making qsort.d from qsort.c
1786making radixsort.d from radixsort.c
1787making random.d from random.c
1788making raw.d from raw.c
1789making registration.d from registration.c
1790making relop.d from relop.c
1791making rlocale.d from rlocale.c
1792making saveload.d from saveload.c
1793making scan.d from scan.c
1794making seq.d from seq.c
1795making serialize.d from serialize.c
1796making sort.d from sort.c
1797making source.d from source.c
1798making split.d from split.c
1799making sprintf.d from sprintf.c
1800making startup.d from startup.c
1801making subassign.d from subassign.c
1802making subscript.d from subscript.c
1803making subset.d from subset.c
1804making summary.d from summary.c
1805making sysutils.d from sysutils.c
1806making times.d from times.c
1807making unique.d from unique.c
1808making util.d from util.c
1809making version.d from version.c
1810making g_alab_her.d from g_alab_her.c
1811making g_cntrlify.d from g_cntrlify.c
1812making g_fontdb.d from g_fontdb.c
1813making g_her_glyph.d from g_her_glyph.c
1814making Rmain.d from Rmain.c
1815making alloca.d from alloca.c
1816making mkdtemp.d from mkdtemp.c
1817making strdup.d from strdup.c
1818making strncasecmp.d from strncasecmp.c
1819make[6]: Entering directory '/home/Sebastien/sage33/sage/local/var/tmp/sage/build/r-3.3.3.p1/src/src/main'
1820gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/home/Sebastien/sage33/sage/local/include  -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c CommandLineArgs.c -o CommandLineArgs.o
1821gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/home/Sebastien/sage33/sage/local/include  -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c Rdynload.c -o Rdynload.o
1822gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/home/Sebastien/sage33/sage/local/include  -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c Renviron.c -o Renviron.o
1823gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/home/Sebastien/sage33/sage/local/include  -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c RNG.c -o RNG.o
1824gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/home/Sebastien/sage33/sage/local/include  -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c agrep.c -o agrep.o
1825gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/home/Sebastien/sage33/sage/local/include  -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c apply.c -o apply.o
1826gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/home/Sebastien/sage33/sage/local/include  -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c arithmetic.c -o arithmetic.o
1827gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/home/Sebastien/sage33/sage/local/include  -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c array.c -o array.o
1828gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/home/Sebastien/sage33/sage/local/include  -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c attrib.c -o attrib.o
1829gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/home/Sebastien/sage33/sage/local/include  -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c bind.c -o bind.o
1830gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/home/Sebastien/sage33/sage/local/include  -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c builtin.c -o builtin.o
1831gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/home/Sebastien/sage33/sage/local/include  -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c character.c -o character.o
1832gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/home/Sebastien/sage33/sage/local/include  -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c coerce.c -o coerce.o
1833gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/home/Sebastien/sage33/sage/local/include  -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c colors.c -o colors.o
1834gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/home/Sebastien/sage33/sage/local/include  -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c complex.c -o complex.o
1835gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/home/Sebastien/sage33/sage/local/include  -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c connections.c -o connections.o
1836gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/home/Sebastien/sage33/sage/local/include  -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c context.c -o context.o
1837gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/home/Sebastien/sage33/sage/local/include  -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c cum.c -o cum.o
1838gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/home/Sebastien/sage33/sage/local/include  -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c dcf.c -o dcf.o
1839gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/home/Sebastien/sage33/sage/local/include  -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c datetime.c -o datetime.o
1840gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/home/Sebastien/sage33/sage/local/include  -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c debug.c -o debug.o
1841In file included from datetime.c:55:0:
1842datetime.c:102:14: warning: '_tzname' redeclared without dllimport attribute: previous dllimport ignored [-Wattributes]
1843 extern char *tzname[2];
1844              ^
1845gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/home/Sebastien/sage33/sage/local/include  -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c deparse.c -o deparse.o
1846gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/home/Sebastien/sage33/sage/local/include  -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c devices.c -o devices.o
1847gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/home/Sebastien/sage33/sage/local/include  -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c dotcode.c -o dotcode.o
1848gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/home/Sebastien/sage33/sage/local/include  -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c dounzip.c -o dounzip.o
1849gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/home/Sebastien/sage33/sage/local/include  -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c dstruct.c -o dstruct.o
1850gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/home/Sebastien/sage33/sage/local/include  -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c duplicate.c -o duplicate.o
1851gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/home/Sebastien/sage33/sage/local/include  -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c edit.c -o edit.o
1852gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/home/Sebastien/sage33/sage/local/include  -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c engine.c -o engine.o
1853gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/home/Sebastien/sage33/sage/local/include  -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c envir.c -o envir.o
1854gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/home/Sebastien/sage33/sage/local/include  -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c errors.c -o errors.o
1855gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/home/Sebastien/sage33/sage/local/include  -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c eval.c -o eval.o
1856gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/home/Sebastien/sage33/sage/local/include  -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c format.c -o format.o
1857gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/home/Sebastien/sage33/sage/local/include  -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c gevents.c -o gevents.o
1858gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/home/Sebastien/sage33/sage/local/include  -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c gram.c -o gram.o
1859gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/home/Sebastien/sage33/sage/local/include  -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c gram-ex.c -o gram-ex.o
1860gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/home/Sebastien/sage33/sage/local/include  -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c graphics.c -o graphics.o
1861gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/home/Sebastien/sage33/sage/local/include  -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c grep.c -o grep.o
1862gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/home/Sebastien/sage33/sage/local/include  -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c identical.c -o identical.o
1863gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/home/Sebastien/sage33/sage/local/include  -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c inlined.c -o inlined.o
1864gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/home/Sebastien/sage33/sage/local/include  -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c inspect.c -o inspect.o
1865gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/home/Sebastien/sage33/sage/local/include  -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c internet.c -o internet.o
1866gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/home/Sebastien/sage33/sage/local/include  -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c iosupport.c -o iosupport.o
1867gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/home/Sebastien/sage33/sage/local/include  -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c lapack.c -o lapack.o
1868gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/home/Sebastien/sage33/sage/local/include  -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c list.c -o list.o
1869gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/home/Sebastien/sage33/sage/local/include  -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c localecharset.c -o localecharset.o
1870gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/home/Sebastien/sage33/sage/local/include  -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c logic.c -o logic.o
1871gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/home/Sebastien/sage33/sage/local/include  -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c main.c -o main.o
1872gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/home/Sebastien/sage33/sage/local/include  -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c mapply.c -o mapply.o
1873main.c: In function 'dummy_ii':
1874main.c:1656:12: warning: function returns address of local variable [-Wreturn-local-addr]
1875     return (uintptr_t) &ii;
1876            ^
1877gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/home/Sebastien/sage33/sage/local/include  -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c match.c -o match.o
1878gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/home/Sebastien/sage33/sage/local/include  -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c memory.c -o memory.o
1879gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/home/Sebastien/sage33/sage/local/include  -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c names.c -o names.o
1880gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/home/Sebastien/sage33/sage/local/include  -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c objects.c -o objects.o
1881gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/home/Sebastien/sage33/sage/local/include  -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c options.c -o options.o
1882gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/home/Sebastien/sage33/sage/local/include  -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c paste.c -o paste.o
1883gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/home/Sebastien/sage33/sage/local/include  -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c platform.c -o platform.o
1884gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/home/Sebastien/sage33/sage/local/include  -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c plot.c -o plot.o
1885gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/home/Sebastien/sage33/sage/local/include  -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c plot3d.c -o plot3d.o
1886gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/home/Sebastien/sage33/sage/local/include  -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c plotmath.c -o plotmath.o
1887gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/home/Sebastien/sage33/sage/local/include  -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c print.c -o print.o
1888gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/home/Sebastien/sage33/sage/local/include  -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c printarray.c -o printarray.o
1889gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/home/Sebastien/sage33/sage/local/include  -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c printvector.c -o printvector.o
1890gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/home/Sebastien/sage33/sage/local/include  -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c printutils.c -o printutils.o
1891gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/home/Sebastien/sage33/sage/local/include  -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c qsort.c -o qsort.o
1892gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/home/Sebastien/sage33/sage/local/include  -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c radixsort.c -o radixsort.o
1893gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/home/Sebastien/sage33/sage/local/include  -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c random.c -o random.o
1894gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/home/Sebastien/sage33/sage/local/include  -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c raw.c -o raw.o
1895gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/home/Sebastien/sage33/sage/local/include  -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c registration.c -o registration.o
1896gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/home/Sebastien/sage33/sage/local/include  -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c relop.c -o relop.o
1897gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/home/Sebastien/sage33/sage/local/include  -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c rlocale.c -o rlocale.o
1898gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/home/Sebastien/sage33/sage/local/include  -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c saveload.c -o saveload.o
1899gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/home/Sebastien/sage33/sage/local/include  -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c scan.c -o scan.o
1900gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/home/Sebastien/sage33/sage/local/include  -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c seq.c -o seq.o
1901gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/home/Sebastien/sage33/sage/local/include  -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c serialize.c -o serialize.o
1902gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/home/Sebastien/sage33/sage/local/include  -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c sort.c -o sort.o
1903gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/home/Sebastien/sage33/sage/local/include  -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c source.c -o source.o
1904gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/home/Sebastien/sage33/sage/local/include  -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c split.c -o split.o
1905gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/home/Sebastien/sage33/sage/local/include  -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c sprintf.c -o sprintf.o
1906gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/home/Sebastien/sage33/sage/local/include  -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c startup.c -o startup.o
1907gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/home/Sebastien/sage33/sage/local/include  -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c subassign.c -o subassign.o
1908gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/home/Sebastien/sage33/sage/local/include  -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c subscript.c -o subscript.o
1909gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/home/Sebastien/sage33/sage/local/include  -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c subset.c -o subset.o
1910gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/home/Sebastien/sage33/sage/local/include  -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c summary.c -o summary.o
1911gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/home/Sebastien/sage33/sage/local/include  -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c sysutils.c -o sysutils.o
1912gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/home/Sebastien/sage33/sage/local/include  -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c times.c -o times.o
1913gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/home/Sebastien/sage33/sage/local/include  -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c unique.c -o unique.o
1914gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/home/Sebastien/sage33/sage/local/include  -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c util.c -o util.o
1915gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/home/Sebastien/sage33/sage/local/include  -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c version.c -o version.o
1916gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/home/Sebastien/sage33/sage/local/include  -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c g_alab_her.c -o g_alab_her.o
1917gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/home/Sebastien/sage33/sage/local/include  -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c g_cntrlify.c -o g_cntrlify.o
1918gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/home/Sebastien/sage33/sage/local/include  -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c g_fontdb.c -o g_fontdb.o
1919gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/home/Sebastien/sage33/sage/local/include  -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c g_her_glyph.c -o g_her_glyph.o
1920gfortran  -fopenmp -fpic  -g -O2  -c xxxpr.f -o xxxpr.o
1921gcc -shared -fopenmp -L/home/Sebastien/sage33/sage/local/lib -Wl,-rpath,/home/Sebastien/sage33/sage/local/lib   -o libR.so CommandLineArgs.o Rdynload.o Renviron.o RNG.o agrep.o apply.o arithmetic.o array.o attrib.o bind.o builtin.o character.o coerce.o colors.o complex.o connections.o context.o cum.o dcf.o datetime.o debug.o deparse.o devices.o dotcode.o dounzip.o dstruct.o duplicate.o edit.o engine.o envir.o errors.o eval.o format.o gevents.o gram.o gram-ex.o graphics.o grep.o identical.o inlined.o inspect.o internet.o iosupport.o lapack.o list.o localecharset.o logic.o main.o mapply.o match.o memory.o names.o objects.o options.o paste.o platform.o plot.o plot3d.o plotmath.o print.o printarray.o printvector.o printutils.o qsort.o radixsort.o random.o raw.o registration.o relop.o rlocale.o saveload.o scan.o seq.o serialize.o sort.o source.o split.o sprintf.o startup.o subassign.o subscript.o subset.o summary.o sysutils.o times.o unique.o util.o version.o g_alab_her.o g_cntrlify.o g_fontdb.o g_her_glyph.o xxxpr.o   `ls ../unix/*.o ../appl/*.o ../nmath/*.o` ../extra/tre/libtre.a ../extra/xdr/libxdr.a   -L/home/Sebastien/sage33/sage/local/lib -lopenblas -lgfortran -lquadmath -lm -lcygwin -ladvapi32 -lshell32 -luser32  -lintl -lreadline  -lpcre -llzma -lbz2 -lz -lrt -ldl -lm -liconv 
1922make[7]: Entering directory '/home/Sebastien/sage33/sage/local/var/tmp/sage/build/r-3.3.3.p1/src/src/main'
1923mkdir -p -- /home/Sebastien/sage33/sage/local/var/tmp/sage/build/r-3.3.3.p1/src/bin/exec
1924mkdir -p -- /home/Sebastien/sage33/sage/local/var/tmp/sage/build/r-3.3.3.p1/src/lib
1925make[7]: Leaving directory '/home/Sebastien/sage33/sage/local/var/tmp/sage/build/r-3.3.3.p1/src/src/main'
1926make[6]: Leaving directory '/home/Sebastien/sage33/sage/local/var/tmp/sage/build/r-3.3.3.p1/src/src/main'
1927make[6]: Entering directory '/home/Sebastien/sage33/sage/local/var/tmp/sage/build/r-3.3.3.p1/src/src/main'
1928gcc -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/home/Sebastien/sage33/sage/local/include  -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c Rmain.c -o Rmain.o
1929gcc -fopenmp  -L../../lib -L/home/Sebastien/sage33/sage/local/lib -Wl,-rpath,/home/Sebastien/sage33/sage/local/lib  -o R.bin Rmain.o  -lR
1930/usr/lib/gcc/x86_64-pc-cygwin/5.4.0/../../../../x86_64-pc-cygwin/bin/ld: cannot find -lR
1931collect2: error: ld returned 1 exit status
1932make[6]: *** [Makefile:145: R.bin] Error 1
1933make[6]: Leaving directory '/home/Sebastien/sage33/sage/local/var/tmp/sage/build/r-3.3.3.p1/src/src/main'
1934make[5]: *** [Makefile:136: R] Error 2
1935make[5]: Leaving directory '/home/Sebastien/sage33/sage/local/var/tmp/sage/build/r-3.3.3.p1/src/src/main'
1936make[4]: *** [Makefile:28: R] Error 1
1937make[4]: Leaving directory '/home/Sebastien/sage33/sage/local/var/tmp/sage/build/r-3.3.3.p1/src/src'
1938make[3]: *** [Makefile:61: R] Error 1
1939make[3]: Leaving directory '/home/Sebastien/sage33/sage/local/var/tmp/sage/build/r-3.3.3.p1/src'
1940Error building R.
1941
1942real    5m55.988s
1943user    2m56.138s
1944sys     3m49.186s
1945************************************************************************
1946Error installing package r-3.3.3.p1
1947************************************************************************
1948Please email sage-devel (http://groups.google.com/group/sage-devel)
1949explaining the problem and including the relevant part of the log file
1950  /home/Sebastien/sage33/sage/logs/pkgs/r-3.3.3.p1.log
1951Describe your computer, operating system, etc.
1952If you want to try to fix the problem yourself, *don't* just cd to
1953/home/Sebastien/sage33/sage/local/var/tmp/sage/build/r-3.3.3.p1 and type 'make' or whatever is appropriate.
1954Instead, the following commands setup all environment variables
1955correctly and load a subshell for you to debug the error:
1956  (cd '/home/Sebastien/sage33/sage/local/var/tmp/sage/build/r-3.3.3.p1' && '/home/Sebastien/sage33/sage/sage' --sh)
1957When you are done debugging, you can type "exit" to leave the subshell.
1958************************************************************************