Ticket #20190: r-3.2.4.p0-EC.log

File r-3.2.4.p0-EC.log, 252.4 KB (added by charpent, 6 years ago)

Compilation log on my (charpent's) machine

Line 
1Found local metadata for r-3.2.4.p0
2Using cached file /usr/local/sage-7/upstream/R-3.2.4.tar.gz
3r-3.2.4.p0
4====================================================
5Setting up build directory for r-3.2.4.p0
6Finished set up
7****************************************************
8Host system:
9Linux asus16-ec 4.3.0-1-amd64 #1 SMP Debian 4.3.5-1 (2016-02-06) x86_64 GNU/Linux
10****************************************************
11C compiler: gcc
12C compiler version:
13Using built-in specs.
14COLLECT_GCC=gcc
15COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/5/lto-wrapper
16Target: x86_64-linux-gnu
17Configured with: ../src/configure -v --with-pkgversion='Debian 5.3.1-8' --with-bugurl=file:///usr/share/doc/gcc-5/README.Bugs --enable-languages=c,ada,c++,java,go,d,fortran,objc,obj-c++ --prefix=/usr --program-suffix=-5 --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --with-sysroot=/ --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-vtable-verify --enable-libmpx --enable-plugin --with-system-zlib --disable-browser-plugin --enable-java-awt=gtk --enable-gtk-cairo --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-5-amd64/jre --enable-java-home --with-jvm-root-dir=/usr/lib/jvm/java-1.5.0-gcj-5-amd64 --with-jvm-jar-dir=/usr/lib/jvm-exports/java-1.5.0-gcj-5-amd64 --with-arch-directory=amd64 --with-ecj-jar=/usr/share/java/eclipse-ecj.jar --enable-objc-gc --enable-multiarch --with-arch-32=i586 --with-abi=m64 --with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu
18Thread model: posix
19gcc version 5.3.1 20160205 (Debian 5.3.1-8)
20****************************************************
21R_CONFIGURE_BLAS=--with-blas=-L/usr/local/sage-7/local/lib -lf77blas -latlas
22R_CONFIGURE_LAPACK=--with-lapack=-L/usr/local/sage-7/local/lib -llapack -lf77blas -lcblas -latlas
23patching file src/scripts/R.sh.in
24patching file configure
25Hunk #1 succeeded at 22924 (offset 47 lines).
26Hunk #2 succeeded at 23280 (offset 47 lines).
27patching file m4/R.m4
28Hunk #1 succeeded at 3111 (offset 4 lines).
29patching file configure
30Hunk #1 succeeded at 34595 (offset 52 lines).
31patching file configure.ac
32Hunk #1 succeeded at 1340 (offset 30 lines).
33patching file configure
34Hunk #1 succeeded at 26365 (offset 52 lines).
35patching file src/library/parallel/src/fork.c
36Hunk #1 succeeded at 229 with fuzz 1 (offset 2 lines).
37patching file src/scripts/Makefile.in
38checking build system type... x86_64-pc-linux-gnu
39checking host system type... x86_64-pc-linux-gnu
40loading site script './config.site'
41loading build-specific script './config.site'
42checking for pwd... /bin/pwd
43checking whether builddir is srcdir... yes
44checking for working aclocal... found
45checking for working autoconf... found
46checking for working automake... found
47checking for working autoheader... found
48checking for gawk... gawk
49checking whether ln -s works... yes
50checking for bison... bison -y
51checking for ar... ar
52checking for a BSD-compatible install... /usr/bin/install -c
53checking for sed... /bin/sed
54checking for which... /usr/bin/which
55checking for less... /usr/bin/less
56checking for gtar... no
57checking for gnutar... no
58checking for tar... /bin/tar
59checking for tex... /usr/bin/tex
60checking for pdftex... /usr/bin/pdftex
61checking for pdflatex... /usr/bin/pdflatex
62checking for makeindex... /usr/bin/makeindex
63checking for texi2any... /usr/bin/texi2any
64checking whether texi2any version is at least 5.1... yes
65checking for ginstall-info... /usr/bin/ginstall-info
66checking for texi2dvi... /usr/bin/texi2dvi
67checking for kpsewhich... /usr/bin/kpsewhich
68checking for latex inconsolata package... found zi4.sty
69checking for unzip... /usr/bin/unzip
70checking for zip... /usr/bin/zip
71checking for gzip... /bin/gzip
72checking for bzip2... /usr/local/sage-7/local/bin/bzip2
73checking for firefox... /usr/bin/firefox
74using default browser ... /usr/bin/firefox
75checking for acroread... /usr/bin/acroread
76checking for notangle... /usr/bin/notangle
77checking for realpath... /usr/bin/realpath
78checking for pkg-config... /usr/local/sage-7/local/bin/pkg-config
79checking for gcc... gcc
80checking whether the C compiler works... yes
81checking for C compiler default output file name... a.out
82checking for suffix of executables...
83checking whether we are cross compiling... no
84checking for suffix of object files... o
85checking whether we are using the GNU C compiler... yes
86checking whether gcc accepts -g... yes
87checking for gcc option to accept ISO C89... none needed
88checking how to run the C preprocessor... gcc -E
89checking for grep that handles long lines and -e... /bin/grep
90checking for egrep... /bin/grep -E
91checking whether gcc needs -traditional... no
92checking how to run the C preprocessor... gcc -E
93defining F77 to be gfortran
94checking whether we are using the GNU Fortran 77 compiler... yes
95checking whether gfortran accepts -g... yes
96checking whether we are using the GNU C++ compiler... yes
97checking whether g++ accepts -g... yes
98checking how to run the C++ preprocessor... g++ -E
99checking whether __attribute__((visibility())) is supported... yes
100checking whether gcc accepts -fvisibility... yes
101checking whether gfortran accepts -fvisibility... yes
102checking for ANSI C header files... yes
103checking for sys/types.h... yes
104checking for sys/stat.h... yes
105checking for stdlib.h... yes
106checking for string.h... yes
107checking for memory.h... yes
108checking for strings.h... yes
109checking for inttypes.h... yes
110checking for stdint.h... yes
111checking for unistd.h... yes
112checking minix/config.h usability... no
113checking minix/config.h presence... no
114checking for minix/config.h... no
115checking whether it is safe to define __EXTENSIONS__... yes
116checking for gcc... gcc
117checking whether we are using the GNU Objective C compiler... no
118checking whether gcc accepts -g... no
119checking for Objective C++ compiler... trying some possibilities
120checking whether g++ can compile ObjC++... no
121checking whether  can compile ObjC++... no
122no working ObjC++ compiler found
123checking for a sed that does not truncate output... (cached) /bin/sed
124checking for fgrep... /bin/grep -F
125checking for ld used by gcc... ld
126checking if the linker (ld) is GNU ld... yes
127checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
128checking the name lister (/usr/bin/nm -B) interface... BSD nm
129checking the maximum length of command line arguments... 1572864
130checking whether the shell understands some XSI constructs... yes
131checking whether the shell understands "+="... yes
132checking for ld option to reload object files... -r
133checking for objdump... objdump
134checking how to recognize dependent libraries... pass_all
135checking for strip... strip
136checking for ranlib... ranlib
137checking command to parse /usr/bin/nm -B output from gcc object... ok
138checking for dlfcn.h... yes
139checking whether we are using the GNU C++ compiler... (cached) yes
140checking whether g++ accepts -g... (cached) yes
141checking how to run the C++ preprocessor... g++ -E
142checking whether we are using the GNU Fortran 77 compiler... (cached) yes
143checking whether gfortran accepts -g... (cached) yes
144checking for objdir... .libs
145checking if gcc supports -fno-rtti -fno-exceptions... no
146checking for gcc option to produce PIC... -fPIC -DPIC
147checking if gcc PIC flag -fPIC -DPIC works... yes
148checking if gcc static flag -static works... yes
149checking if gcc supports -c -o file.o... yes
150checking if gcc supports -c -o file.o... (cached) yes
151checking whether the gcc linker (ld) supports shared libraries... yes
152checking whether -lc should be explicitly linked in... no
153checking dynamic linker characteristics... GNU/Linux ld.so
154checking how to hardcode library paths into programs... immediate
155checking whether stripping libraries is possible... yes
156checking if libtool supports shared libraries... yes
157checking whether to build shared libraries... yes
158checking whether to build static libraries... no
159checking for ld used by g++... ld
160checking if the linker (ld) is GNU ld... yes
161checking whether the g++ linker (ld) supports shared libraries... yes
162checking for g++ option to produce PIC... -fPIC -DPIC
163checking if g++ PIC flag -fPIC -DPIC works... yes
164checking if g++ static flag -static works... yes
165checking if g++ supports -c -o file.o... yes
166checking if g++ supports -c -o file.o... (cached) yes
167checking whether the g++ linker (ld) supports shared libraries... yes
168checking dynamic linker characteristics... GNU/Linux ld.so
169checking how to hardcode library paths into programs... immediate
170checking if libtool supports shared libraries... yes
171checking whether to build shared libraries... yes
172checking whether to build static libraries... no
173checking for gfortran option to produce PIC... -fPIC
174checking if gfortran PIC flag -fPIC works... yes
175checking if gfortran static flag -static works... yes
176checking if gfortran supports -c -o file.o... yes
177checking if gfortran supports -c -o file.o... (cached) yes
178checking whether the gfortran linker (ld) supports shared libraries... yes
179checking dynamic linker characteristics... GNU/Linux ld.so
180checking how to hardcode library paths into programs... immediate
181checking for cos in -lm... yes
182checking for sin in -lm... yes
183checking for dlopen in -ldl... yes
184checking readline/history.h usability... yes
185checking readline/history.h presence... yes
186checking for readline/history.h... yes
187checking readline/readline.h usability... yes
188checking readline/readline.h presence... yes
189checking for readline/readline.h... yes
190checking for rl_callback_read_char in -lreadline... yes
191checking for history_truncate_file... yes
192checking whether rl_completion_matches exists and is declared... yes
193checking for ANSI C header files... (cached) yes
194checking for dirent.h that defines DIR... yes
195checking for library containing opendir... none required
196checking for sys/wait.h that is POSIX.1 compatible... yes
197checking arpa/inet.h usability... yes
198checking arpa/inet.h presence... yes
199checking for arpa/inet.h... yes
200checking dl.h usability... no
201checking dl.h presence... no
202checking for dl.h... no
203checking for dlfcn.h... (cached) yes
204checking elf.h usability... yes
205checking elf.h presence... yes
206checking for elf.h... yes
207checking features.h usability... yes
208checking features.h presence... yes
209checking for features.h... yes
210checking fcntl.h usability... yes
211checking fcntl.h presence... yes
212checking for fcntl.h... yes
213checking floatingpoint.h usability... no
214checking floatingpoint.h presence... no
215checking for floatingpoint.h... no
216checking fpu_control.h usability... yes
217checking fpu_control.h presence... yes
218checking for fpu_control.h... yes
219checking glob.h usability... yes
220checking glob.h presence... yes
221checking for glob.h... yes
222checking grp.h usability... yes
223checking grp.h presence... yes
224checking for grp.h... yes
225checking langinfo.h usability... yes
226checking langinfo.h presence... yes
227checking for langinfo.h... yes
228checking netdb.h usability... yes
229checking netdb.h presence... yes
230checking for netdb.h... yes
231checking netinet/in.h usability... yes
232checking netinet/in.h presence... yes
233checking for netinet/in.h... yes
234checking pwd.h usability... yes
235checking pwd.h presence... yes
236checking for pwd.h... yes
237checking sched.h usability... yes
238checking sched.h presence... yes
239checking for sched.h... yes
240checking for strings.h... (cached) yes
241checking sys/param.h usability... yes
242checking sys/param.h presence... yes
243checking for sys/param.h... yes
244checking sys/resource.h usability... yes
245checking sys/resource.h presence... yes
246checking for sys/resource.h... yes
247checking sys/select.h usability... yes
248checking sys/select.h presence... yes
249checking for sys/select.h... yes
250checking sys/socket.h usability... yes
251checking sys/socket.h presence... yes
252checking for sys/socket.h... yes
253checking for sys/stat.h... (cached) yes
254checking sys/time.h usability... yes
255checking sys/time.h presence... yes
256checking for sys/time.h... yes
257checking sys/times.h usability... yes
258checking sys/times.h presence... yes
259checking for sys/times.h... yes
260checking sys/utsname.h usability... yes
261checking sys/utsname.h presence... yes
262checking for sys/utsname.h... yes
263checking for unistd.h... (cached) yes
264checking utime.h usability... yes
265checking utime.h presence... yes
266checking for utime.h... yes
267checking stdalign.h usability... yes
268checking stdalign.h presence... yes
269checking for stdalign.h... yes
270checking errno.h usability... yes
271checking errno.h presence... yes
272checking for errno.h... yes
273checking for inttypes.h... (cached) yes
274checking limits.h usability... yes
275checking limits.h presence... yes
276checking for limits.h... yes
277checking locale.h usability... yes
278checking locale.h presence... yes
279checking for locale.h... yes
280checking stdarg.h usability... yes
281checking stdarg.h presence... yes
282checking for stdarg.h... yes
283checking stdbool.h usability... yes
284checking stdbool.h presence... yes
285checking for stdbool.h... yes
286checking for stdint.h... (cached) yes
287checking for string.h... (cached) yes
288checking whether setjmp.h is POSIX.1 compatible... yes
289checking whether sigsetjmp is declared... yes
290checking whether siglongjmp is declared... yes
291checking for GNU C library with version >= 2... yes
292checking return type of signal handlers... void
293checking for uint64_t... yes
294checking for int64_t... yes
295checking for int_fast64_t... yes
296checking for pid_t... yes
297checking for size_t... yes
298checking whether SIZE_MAX is declared... yes
299checking for blkcnt_t... yes
300checking for type of socket length... socklen_t *
301checking for stack_t... yes
302checking for intptr_t... yes
303checking for uintptr_t... yes
304checking whether byte ordering is bigendian... no
305checking for an ANSI C-conforming const... yes
306checking for gcc option to accept ISO C99... none needed
307checking for gcc option to accept ISO Standard C... (cached) none needed
308checking for inline... inline
309checking size of int... 4
310checking size of long... 8
311checking size of long long... 8
312checking size of double... 8
313checking size of size_t... 8
314checking size of long double... 16
315checking whether we can compute C Make dependencies... yes, using $(CC) -MM
316checking whether gcc supports -c -o FILE.lo... yes
317checking for gcc option to support OpenMP... -fopenmp
318checking how to get verbose linking output from gfortran... -###
319checking for Fortran 77 libraries of gfortran...  -L/usr/local/sage-7/local/lib -L/usr/local/sage-7/local/lib/x86_64-linux-gnu -L/usr/local/sage-7/local/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/5 -L/usr/lib/gcc/x86_64-linux-gnu/5/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/5/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/5/../../.. -lgfortran -lm -lquadmath
320checking how to get verbose linking output from gcc... -###
321checking for C libraries of gcc...  -L/usr/local/sage-7/local/lib -L/usr/local/sage-7/local/lib/x86_64-linux-gnu -L/usr/local/sage-7/local/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/5 -L/usr/lib/gcc/x86_64-linux-gnu/5/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/5/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/5/../../.. -lgcc_s
322checking for dummy main to link with Fortran 77 libraries... none
323checking for Fortran 77 name-mangling scheme... lower case, underscore, no extra underscore
324checking whether gfortran appends underscores to external names... yes
325checking whether gfortran appends extra underscores to external names... no
326checking whether mixed C/Fortran code can be run... yes
327checking whether gfortran and gcc agree on int and double... yes
328checking whether gfortran and gcc agree on double complex... yes
329checking for gfortran option to support OpenMP... -fopenmp
330checking whether g++ accepts -M for generating dependencies... yes
331checking for g++ option to support OpenMP... -fopenmp
332checking whether we can compute ObjC Make dependencies... no
333checking whether C runtime needs -D__NO_MATH_INLINES... no
334checking for xmkmf... no
335checking whether g++  supports C++11 features by default... no
336checking whether g++  supports C++11 features with -std=c++11... yes
337checking for off_t... yes
338checking for working alloca.h... yes
339checking for alloca... yes
340checking whether alloca is declared... yes
341checking whether expm1 exists and is declared... yes
342checking whether hypot exists and is declared... yes
343checking whether log1p exists and is declared... yes
344checking whether log1pl exists and is declared... yes
345checking whether log2 exists and is declared... yes
346checking whether log10 exists and is declared... yes
347checking whether nearbyint exists and is declared... yes
348checking whether nearbyintl exists and is declared... yes
349checking whether powl exists and is declared... yes
350checking whether rint exists and is declared... yes
351checking whether rintl exists and is declared... yes
352checking whether va_copy exists and is declared... yes
353checking for isblank... yes
354checking sunmath.h usability... no
355checking sunmath.h presence... no
356checking for sunmath.h... no
357checking for cospi in -lsunmath... no
358checking for atanpi... no
359checking for atan2pi... no
360checking for cospi... no
361checking for exp10... yes
362checking for pown... no
363checking for sinpi... no
364checking for tanpi... no
365checking for fseeko... yes
366checking for ftello... yes
367checking for matherr... yes
368checking whether fcntl exists and is declared... yes
369checking whether getgrgid exists and is declared... yes
370checking whether getpwuid exists and is declared... yes
371checking whether kill exists and is declared... yes
372checking whether sigaction exists and is declared... yes
373checking whether sigaltstack exists and is declared... yes
374checking whether sigemptyset exists and is declared... yes
375checking whether fdopen exists and is declared... yes
376checking whether popen exists and is declared... yes
377checking whether setenv exists and is declared... yes
378checking whether unsetenv exists and is declared... yes
379checking whether getrlimit exists and is declared... yes
380checking whether getrusage exists and is declared... yes
381checking whether getpriority exists and is declared... yes
382checking whether chmod exists and is declared... yes
383checking whether mkfifo exists and is declared... yes
384checking whether stat exists and is declared... yes
385checking whether umask exists and is declared... yes
386checking whether gettimeofday exists and is declared... yes
387checking whether utimes exists and is declared... yes
388checking whether times exists and is declared... yes
389checking whether gmtime_r exists and is declared... yes
390checking whether localtime_r exists and is declared... yes
391checking whether nl_langinfo exists and is declared... yes
392checking whether access exists and is declared... yes
393checking whether chdir exists and is declared... yes
394checking whether execv exists and is declared... yes
395checking whether ftruncate exists and is declared... yes
396checking whether getcwd exists and is declared... yes
397checking whether geteuid exists and is declared... yes
398checking whether getuid exists and is declared... yes
399checking whether link exists and is declared... yes
400checking whether readlink exists and is declared... yes
401checking whether symlink exists and is declared... yes
402checking whether sysconf exists and is declared... yes
403checking whether sched_setaffinity exists and is declared... yes
404checking whether sched_getaffinity exists and is declared... yes
405checking whether utime exists and is declared... yes
406checking for clock_gettime in -lrt... yes
407checking whether clock_gettime exists and is declared... yes
408checking whether timespec_get exists and is declared... yes
409checking for putenv... yes
410checking whether putenv is declared... yes
411checking for vasprintf... yes
412checking whether vasprintf is declared... yes
413checking for mempcpy... yes
414checking for realpath... yes
415checking whether realpath is declared... yes
416checking whether glob exists and is declared... yes
417checking for isnan... yes
418checking whether isfinite is declared... yes
419checking whether isnan is declared... yes
420checking whether you have IEEE 754 floating-point arithmetic... yes
421checking whether putenv("FOO") can unset an environment variable... yes
422checking whether putenv("FOO=") can unset an environment variable... no
423checking for nl_langinfo and CODESET... yes
424checking for mkdtemp... yes
425checking for strdup... yes
426checking for strncasecmp... yes
427checking whether mkdtemp is declared... yes
428checking whether strdup is declared... yes
429checking whether strncasecmp is declared... yes
430checking for library containing connect... none required
431checking for library containing gethostbyname... none required
432checking for library containing xdr_string... none required
433checking for __setfpucw... no
434checking for working calloc... yes
435checking for working isfinite... yes
436checking for working log1p... yes
437checking whether ftell works correctly on files opened for append... yes
438checking for working sigaction... yes
439checking whether mktime sets errno... no
440checking whether mktime works correctly outside 1902-2037... yes
441checking complex.h usability... yes
442checking complex.h presence... yes
443checking for complex.h... yes
444checking for double complex... yes
445checking whether C99 double complex is supported... yes
446checking whether cabs exists and is declared... yes
447checking whether carg exists and is declared... yes
448checking whether cexp exists and is declared... yes
449checking whether clog exists and is declared... yes
450checking whether csqrt exists and is declared... yes
451checking whether cpow exists and is declared... yes
452checking whether ccos exists and is declared... yes
453checking whether csin exists and is declared... yes
454checking whether ctan exists and is declared... yes
455checking whether cacos exists and is declared... yes
456checking whether casin exists and is declared... yes
457checking whether catan exists and is declared... yes
458checking whether ccosh exists and is declared... yes
459checking whether csinh exists and is declared... yes
460checking whether ctanh exists and is declared... yes
461checking whether 'struct tm' includes tm_zone... yes
462checking whether 'struct tm' includes tm_gmtoff... yes
463checking for dgemm_ in -L/usr/local/sage-7/local/lib -lf77blas -latlas... yes
464checking whether double complex BLAS can be used... yes
465checking whether the BLAS is complete... yes
466checking for dpstrf_... no
467checking for dpstrf_ in -L/usr/local/sage-7/local/lib -llapack -lf77blas -lcblas -latlas... yes
468checking iconv.h usability... yes
469checking iconv.h presence... yes
470checking for iconv.h... yes
471checking for iconv... yes
472checking whether iconv accepts "UTF-8", "latin1", "ASCII" and "UCS-*"... yes
473checking for iconvlist... no
474checking for iconv... yes
475checking for iconv declaration...
476         extern size_t iconv (iconv_t cd, char * *inbuf, size_t *inbytesleft, char * *outbuf, size_t *outbytesleft);
477checking wchar.h usability... yes
478checking wchar.h presence... yes
479checking for wchar.h... yes
480checking wctype.h usability... yes
481checking wctype.h presence... yes
482checking for wctype.h... yes
483checking whether mbrtowc exists and is declared... yes
484checking whether wcrtomb exists and is declared... yes
485checking whether wcscoll exists and is declared... yes
486checking whether wcsftime exists and is declared... yes
487checking whether wcstod exists and is declared... yes
488checking whether mbstowcs exists and is declared... yes
489checking whether wcstombs exists and is declared... yes
490checking whether wctrans exists and is declared... yes
491checking whether iswblank exists and is declared... yes
492checking whether wctype exists and is declared... yes
493checking whether iswctype exists and is declared... yes
494checking for wctrans_t... yes
495checking for mbstate_t... yes
496checking for ICU... yes
497checking for X... libraries , headers
498checking for gethostbyname... yes
499checking for connect... yes
500checking for remove... yes
501checking for shmat... yes
502checking for IceConnectionNumber in -lICE... yes
503checking X11/Intrinsic.h usability... yes
504checking X11/Intrinsic.h presence... yes
505checking for X11/Intrinsic.h... yes
506checking for XtToolkitInitialize in -lXt... yes
507using X11 ... yes
508checking for KeySym... yes
509checking X11/Xmu/Atoms.h usability... yes
510checking X11/Xmu/Atoms.h presence... yes
511checking for X11/Xmu/Atoms.h... yes
512checking for XmuInternAtom in -lXmu... yes
513checking whether pkg-config knows about cairo and pango... yes
514checking whether cairo including pango is >= 1.2 and works... yes
515checking for tclConfig.sh... no
516checking for tclConfig.sh in library (sub)directories... /usr/lib/tclConfig.sh
517checking for tkConfig.sh... no
518checking for tkConfig.sh in library (sub)directories... /usr/lib/tkConfig.sh
519checking tcl.h usability... yes
520checking tcl.h presence... yes
521checking for tcl.h... yes
522checking tk.h usability... yes
523checking tk.h presence... yes
524checking for tk.h... yes
525checking whether compiling/linking Tcl/Tk code works... yes
526checking for BSD networking... yes
527checking if jpeglib version >= 6b... yes
528checking for jpeg_destroy_compress in -ljpeg... yes
529checking for main in -lz... yes
530checking if libpng version >= 1.2.7... yes
531checking for png_create_write_struct in -lpng... yes
532checking tiffio.h usability... yes
533checking tiffio.h presence... yes
534checking for tiffio.h... yes
535checking for TIFFOpen in -ltiff... yes
536checking rpc/types.h usability... yes
537checking rpc/types.h presence... yes
538checking for rpc/types.h... yes
539checking for rpc/xdr.h... yes
540checking for XDR support... yes
541checking for inflateInit2_ in -lz... yes
542checking zlib.h usability... yes
543checking zlib.h presence... yes
544checking for zlib.h... yes
545checking if zlib version >= 1.2.5... yes
546checking whether zlib support needs to be compiled... no
547checking for BZ2_bzlibVersion in -lbz2... yes
548checking bzlib.h usability... yes
549checking bzlib.h presence... yes
550checking for bzlib.h... yes
551checking if bzip2 version >= 1.0.6... yes
552checking whether bzip2 support needs to be compiled... no
553checking for lzma_version_number in -llzma... yes
554checking lzma.h usability... yes
555checking lzma.h presence... yes
556checking for lzma.h... yes
557checking if lzma version >= 5.0.3... yes
558checking for pcre_fullinfo in -lpcre... yes
559checking pcre.h usability... yes
560checking pcre.h presence... yes
561checking for pcre.h... yes
562checking pcre/pcre.h usability... no
563checking pcre/pcre.h presence... no
564checking for pcre/pcre.h... no
565checking if PCRE version >= 8.10, < 10.0 and has UTF-8 support... yes
566checking whether PCRE support needs to be compiled... no
567checking for curl-config... /usr/bin/curl-config
568libcurl 7.47.0
569checking if libcurl version >= 7.28.0... yes
570checking curl/curl.h usability... yes
571checking curl/curl.h presence... yes
572checking for curl/curl.h... yes
573checking whether leap seconds are treated according to POSIX... yes
574checking for inline... inline
575checking for sys/time.h... (cached) yes
576checking for stdlib.h... (cached) yes
577checking for unistd.h... (cached) yes
578checking for sys/param.h... (cached) yes
579checking for struct stat.st_atim.tv_nsec... yes
580checking whether struct stat.st_atim is of type struct timespec... yes
581checking for setitimer... yes
582checking for special C compiler options needed for large files... no
583checking for _FILE_OFFSET_BITS value needed for large files... no
584checking for _LARGEFILE_SOURCE value needed for large files... no
585checking whether KERN_USRSTACK sysctl is supported... no
586checking for visible __lib_stack_end... yes
587checking for lpr... lpr
588checking for paperconf... /usr/bin/paperconf
589checking whether we are using the GNU Fortran compiler... yes
590checking whether gfortran accepts -g... yes
591checking whether we are using the GNU Fortran compiler... (cached) yes
592checking whether gfortran accepts -g... (cached) yes
593checking if libtool supports shared libraries... yes
594checking whether to build shared libraries... yes
595checking whether to build static libraries... no
596checking for gfortran option to produce PIC... -fPIC
597checking if gfortran PIC flag -fPIC works... yes
598checking if gfortran static flag -static works... yes
599checking if gfortran supports -c -o file.o... yes
600checking if gfortran supports -c -o file.o... (cached) yes
601checking whether the gfortran linker (ld) supports shared libraries... yes
602checking dynamic linker characteristics... GNU/Linux ld.so
603checking how to hardcode library paths into programs... immediate
604checking for Fortran flag to compile .f90 files... none
605checking for Fortran flag to compile .f95 files... none
606checking for gfortran option to support OpenMP... -fopenmp
607checking for recommended packages... yes
608checking whether NLS is requested... yes
609
610Configuring src/extra/intl directory
611checking for a thread-safe mkdir -p... /bin/mkdir -p
612checking whether we are using the GNU C Library 2 or newer... yes
613checking for ranlib... (cached) ranlib
614checking for simple visibility declarations... yes
615checking for stdint.h... yes
616checking for getpagesize... yes
617checking for working mmap... yes
618checking whether integer division by zero raises SIGFPE... yes
619checking for inttypes.h... yes
620checking for unsigned long long int... yes
621checking for inttypes.h... (cached) yes
622checking whether the inttypes.h PRIxNN macros are broken... no
623checking for ld used by gcc... ld
624checking if the linker (ld) is GNU ld... yes
625checking for shared library run path origin... done
626checking whether imported symbols can be declared weak... yes
627checking for multithread API to use... none
628checking argz.h usability... yes
629checking argz.h presence... yes
630checking for argz.h... yes
631checking for inttypes.h... (cached) yes
632checking for limits.h... (cached) yes
633checking for unistd.h... (cached) yes
634checking for sys/param.h... (cached) yes
635checking for getcwd... yes
636checking for getegid... yes
637checking for geteuid... yes
638checking for getgid... yes
639checking for getuid... yes
640checking for mempcpy... (cached) yes
641checking for munmap... yes
642checking for stpcpy... yes
643checking for strcasecmp... yes
644checking for strdup... (cached) yes
645checking for strtoul... yes
646checking for tsearch... yes
647checking for argz_count... yes
648checking for argz_stringify... yes
649checking for argz_next... yes
650checking for __fsetlocking... yes
651checking whether feof_unlocked is declared... yes
652checking whether fgets_unlocked is declared... yes
653checking for iconv... (cached) yes
654checking for iconv declaration... (cached)
655         extern size_t iconv (iconv_t cd, char * *inbuf, size_t *inbytesleft, char * *outbuf, size_t *outbytesleft);
656checking for NL_LOCALE_NAME macro... yes
657checking for bison... bison
658checking version of bison... 3.0.4, ok
659checking for long long int... yes
660checking for long double... yes
661checking for wchar_t... yes
662checking for wint_t... yes
663checking for intmax_t... yes
664checking whether printf() supports POSIX/XSI format strings... yes
665checking whether we are using the GNU C Library 2.1 or newer... yes
666checking for stdint.h... (cached) yes
667checking for SIZE_MAX... yes
668checking for stdint.h... (cached) yes
669checking for CFPreferencesCopyAppValue... no
670checking for CFLocaleCopyCurrent... no
671checking for ptrdiff_t... yes
672checking stddef.h usability... yes
673checking stddef.h presence... yes
674checking for stddef.h... yes
675checking for stdlib.h... (cached) yes
676checking for string.h... (cached) yes
677checking for asprintf... yes
678checking for fwprintf... yes
679checking for putenv... (cached) yes
680checking for setenv... yes
681checking for setlocale... yes
682checking for snprintf... yes
683checking for wcslen... yes
684checking whether _snprintf is declared... no
685checking whether _snwprintf is declared... no
686checking whether getc_unlocked is declared... yes
687checking for nl_langinfo and CODESET... (cached) yes
688checking for LC_MESSAGES... yes
689checking for CFPreferencesCopyAppValue... (cached) no
690checking for CFLocaleCopyCurrent... (cached) no
691checking whether included gettext is requested... no
692checking for GNU gettext in libc... yes
693checking whether to use NLS... yes
694checking where the gettext function comes from... libc
695Finished configuring src/extra/intl directory
696
697using as R_SHELL for scripts ... /bin/bash
698configure: creating ./config.status
699config.status: creating Makeconf
700config.status: creating Makefile
701config.status: creating doc/Makefile
702config.status: creating doc/html/Makefile
703config.status: creating doc/manual/Makefile
704config.status: creating etc/Makefile
705config.status: creating etc/Makeconf
706config.status: creating etc/Renviron
707config.status: creating etc/javaconf
708config.status: creating etc/ldpaths
709config.status: creating m4/Makefile
710config.status: creating po/Makefile
711config.status: creating share/Makefile
712config.status: creating src/Makefile
713config.status: creating src/appl/Makefile
714config.status: creating src/extra/Makefile
715config.status: creating src/extra/blas/Makefile
716config.status: creating src/extra/bzip2/Makefile
717config.status: creating src/extra/intl/Makefile
718config.status: creating src/extra/pcre/Makefile
719config.status: creating src/extra/tre/Makefile
720config.status: creating src/extra/tzone/Makefile
721config.status: creating src/extra/xdr/Makefile
722config.status: creating src/extra/xz/Makefile
723config.status: creating src/extra/zlib/Makefile
724config.status: creating src/include/Makefile
725config.status: creating src/include/Rmath.h0
726config.status: creating src/include/R_ext/Makefile
727config.status: creating src/library/Recommended/Makefile
728config.status: creating src/library/Makefile
729config.status: creating src/library/base/DESCRIPTION
730config.status: creating src/library/base/Makefile
731config.status: creating src/library/compiler/DESCRIPTION
732config.status: creating src/library/compiler/Makefile
733config.status: creating src/library/datasets/DESCRIPTION
734config.status: creating src/library/datasets/Makefile
735config.status: creating src/library/graphics/DESCRIPTION
736config.status: creating src/library/graphics/Makefile
737config.status: creating src/library/graphics/src/Makefile
738config.status: creating src/library/grDevices/DESCRIPTION
739config.status: creating src/library/grDevices/Makefile
740config.status: creating src/library/grDevices/src/Makefile
741config.status: creating src/library/grDevices/src/cairo/Makefile
742config.status: creating src/library/grid/DESCRIPTION
743config.status: creating src/library/grid/Makefile
744config.status: creating src/library/grid/src/Makefile
745config.status: creating src/library/methods/DESCRIPTION
746config.status: creating src/library/methods/Makefile
747config.status: creating src/library/methods/src/Makefile
748config.status: creating src/library/parallel/DESCRIPTION
749config.status: creating src/library/parallel/Makefile
750config.status: creating src/library/parallel/src/Makefile
751config.status: creating src/library/profile/Makefile
752config.status: creating src/library/stats/DESCRIPTION
753config.status: creating src/library/stats/Makefile
754config.status: creating src/library/stats/src/Makefile
755config.status: creating src/library/stats4/DESCRIPTION
756config.status: creating src/library/stats4/Makefile
757config.status: creating src/library/splines/DESCRIPTION
758config.status: creating src/library/splines/Makefile
759config.status: creating src/library/splines/src/Makefile
760config.status: creating src/library/tcltk/DESCRIPTION
761config.status: creating src/library/tcltk/Makefile
762config.status: creating src/library/tcltk/src/Makefile
763config.status: creating src/library/tools/DESCRIPTION
764config.status: creating src/library/tools/Makefile
765config.status: creating src/library/tools/src/Makefile
766config.status: creating src/library/translations/DESCRIPTION
767config.status: creating src/library/translations/Makefile
768config.status: creating src/library/utils/DESCRIPTION
769config.status: creating src/library/utils/Makefile
770config.status: creating src/library/utils/src/Makefile
771config.status: creating src/main/Makefile
772config.status: creating src/modules/Makefile
773config.status: creating src/modules/X11/Makefile
774config.status: creating src/modules/internet/Makefile
775config.status: creating src/modules/lapack/Makefile
776config.status: creating src/nmath/Makefile
777config.status: creating src/nmath/standalone/Makefile
778config.status: creating src/scripts/Makefile
779config.status: creating src/scripts/R.sh
780config.status: creating src/scripts/Rcmd
781config.status: creating src/scripts/f77_f2c
782config.status: creating src/scripts/javareconf
783config.status: creating src/scripts/mkinstalldirs
784config.status: creating src/scripts/pager
785config.status: creating src/scripts/rtags
786config.status: creating src/unix/Makefile
787config.status: creating tests/Makefile
788config.status: creating tests/Embedding/Makefile
789config.status: creating tests/Examples/Makefile
790config.status: creating tools/Makefile
791config.status: creating src/include/config.h
792config.status: executing libtool commands
793config.status: executing stamp-h commands
794
795R is now configured for x86_64-pc-linux-gnu
796
797  Source directory:          .
798  Installation directory:    /usr/local/sage-7/local
799
800  C compiler:                gcc  -g -O2
801  Fortran 77 compiler:       gfortran  -g -O2
802
803  C++ compiler:              g++  -g -O2
804  C++ 11 compiler:           g++  -std=c++11 -g -O2
805  Fortran 90/95 compiler:    gfortran -g -O2
806  Obj-C compiler:             
807
808  Interfaces supported:      X11, tcltk
809  External libraries:        readline, BLAS(ATLAS), LAPACK(generic), zlib, bzlib, lzma, PCRE, curl
810  Additional capabilities:   PNG, JPEG, TIFF, NLS, cairo, ICU
811  Options enabled:           shared R library, R profiling
812
813  Capabilities skipped:     
814  Options not enabled:       shared BLAS, memory profiling
815
816  Recommended packages:      yes
817
818make[3]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src'
819make[4]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/m4'
820make[4]: Nothing to be done for 'R'.
821make[4]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/m4'
822make[4]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/tools'
823make[4]: Nothing to be done for 'R'.
824make[4]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/tools'
825make[4]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/doc'
826make[5]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/doc/html'
827make[5]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/doc/html'
828make[5]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/doc/manual'
829make[5]: Nothing to be done for 'R'.
830make[5]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/doc/manual'
831make[4]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/doc'
832make[4]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/etc'
833make[4]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/etc'
834make[4]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/share'
835make[4]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/share'
836make[4]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src'
837make[5]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/scripts'
838creating src/scripts/R.fe
839make[6]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/scripts'
840mkdir -p -- ../../bin
841make[6]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/scripts'
842make[5]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/scripts'
843make[5]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/include'
844mkdir -p -- ../../include
845make[6]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/include/R_ext'
846mkdir -p -- ../../../include/R_ext
847make[6]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/include/R_ext'
848make[5]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/include'
849make[5]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/extra'
850make[6]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/extra/tre'
851make[7]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/extra/tre'
852making tre-ast.d from tre-ast.c
853making regerror.d from regerror.c
854making regexec.d from regexec.c
855making regcomp.d from regcomp.c
856making tre-compile.d from tre-compile.c
857making tre-match-approx.d from tre-match-approx.c
858making tre-match-backtrack.d from tre-match-backtrack.c
859making tre-match-parallel.d from tre-match-parallel.c
860making tre-mem.d from tre-mem.c
861making tre-parse.d from tre-parse.c
862making tre-stack.d from tre-stack.c
863making xmalloc.d from xmalloc.c
864make[7]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/extra/tre'
865make[7]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/extra/tre'
866gcc -I. -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -fvisibility=hidden -c regcomp.c -o regcomp.o
867gcc -I. -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -fvisibility=hidden -c regerror.c -o regerror.o
868gcc -I. -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -fvisibility=hidden -c regexec.c -o regexec.o
869gcc -I. -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -fvisibility=hidden -c tre-ast.c -o tre-ast.o
870gcc -I. -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -fvisibility=hidden -c tre-compile.c -o tre-compile.o
871gcc -I. -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -fvisibility=hidden -c tre-match-approx.c -o tre-match-approx.o
872gcc -I. -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -fvisibility=hidden -c tre-match-backtrack.c -o tre-match-backtrack.o
873gcc -I. -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -fvisibility=hidden -c tre-match-parallel.c -o tre-match-parallel.o
874gcc -I. -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -fvisibility=hidden -c tre-mem.c -o tre-mem.o
875gcc -I. -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -fvisibility=hidden -c tre-parse.c -o tre-parse.o
876gcc -I. -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -fvisibility=hidden -c tre-stack.c -o tre-stack.o
877gcc -I. -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -fvisibility=hidden -c xmalloc.c -o xmalloc.o
878ar -cr libtre.a regcomp.o regerror.o regexec.o tre-ast.o tre-compile.o tre-match-approx.o tre-match-backtrack.o tre-match-parallel.o tre-mem.o tre-parse.o tre-stack.o xmalloc.o
879ranlib libtre.a
880make[7]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/extra/tre'
881make[6]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/extra/tre'
882make[5]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/extra'
883make[5]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/appl'
884making integrate.d from integrate.c
885making maxcol.d from maxcol.c
886making optim.d from optim.c
887making interv.d from interv.c
888making uncmin.d from uncmin.c
889making pretty.d from pretty.c
890make[6]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/appl'
891gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c integrate.c -o integrate.o
892gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c interv.c -o interv.o
893gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c maxcol.c -o maxcol.o
894gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c optim.c -o optim.o
895gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c pretty.c -o pretty.o
896gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c uncmin.c -o uncmin.o
897gfortran  -fopenmp -fpic  -g -O2  -c dchdc.f -o dchdc.o
898gfortran  -fopenmp -fpic  -g -O2  -c dpbfa.f -o dpbfa.o
899gfortran  -fopenmp -fpic  -g -O2  -c dpbsl.f -o dpbsl.o
900gfortran  -fopenmp -fpic  -g -O2  -c dpoco.f -o dpoco.o
901gfortran  -fopenmp -fpic  -g -O2  -c dpodi.f -o dpodi.o
902gfortran  -fopenmp -fpic  -g -O2  -c dpofa.f -o dpofa.o
903gfortran  -fopenmp -fpic  -g -O2  -c dposl.f -o dposl.o
904gfortran  -fopenmp -fpic  -g -O2  -c dqrdc.f -o dqrdc.o
905gfortran  -fopenmp -fpic  -g -O2  -c dqrdc2.f -o dqrdc2.o
906gfortran  -fopenmp -fpic  -g -O2  -c dqrls.f -o dqrls.o
907gfortran  -fopenmp -fpic  -g -O2  -c dqrsl.f -o dqrsl.o
908gfortran  -fopenmp -fpic  -g -O2  -c dqrutl.f -o dqrutl.o
909gfortran  -fopenmp -fpic  -g -O2  -c dsvdc.f -o dsvdc.o
910gfortran  -fopenmp -fpic  -g -O2  -c dtrco.f -o dtrco.o
911gfortran  -fopenmp -fpic  -g -O2  -c dtrsl.f -o dtrsl.o
912ar -cr libappl.a integrate.o interv.o maxcol.o optim.o pretty.o uncmin.o dchdc.o dpbfa.o dpbsl.o dpoco.o dpodi.o dpofa.o dposl.o dqrdc.o dqrdc2.o dqrls.o dqrsl.o dqrutl.o dsvdc.o dtrco.o dtrsl.o
913ranlib libappl.a
914make[6]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/appl'
915make[5]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/appl'
916make[5]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/nmath'
917making i1mach.d from i1mach.c
918making d1mach.d from d1mach.c
919making mlutils.d from mlutils.c
920making fmax2.d from fmax2.c
921making fmin2.d from fmin2.c
922making fprec.d from fprec.c
923making fround.d from fround.c
924making ftrunc.d from ftrunc.c
925making imax2.d from imax2.c
926making fsign.d from fsign.c
927making sign.d from sign.c
928making imin2.d from imin2.c
929making chebyshev.d from chebyshev.c
930making log1p.d from log1p.c
931making expm1.d from expm1.c
932making lgammacor.d from lgammacor.c
933making gammalims.d from gammalims.c
934making stirlerr.d from stirlerr.c
935making gamma.d from gamma.c
936making bd0.d from bd0.c
937making lgamma.d from lgamma.c
938making beta.d from beta.c
939making gamma_cody.d from gamma_cody.c
940making lbeta.d from lbeta.c
941making polygamma.d from polygamma.c
942making cospi.d from cospi.c
943making bessel_i.d from bessel_i.c
944making bessel_j.d from bessel_j.c
945making bessel_k.d from bessel_k.c
946making bessel_y.d from bessel_y.c
947making choose.d from choose.c
948making snorm.d from snorm.c
949making sexp.d from sexp.c
950making dgamma.d from dgamma.c
951making pgamma.d from pgamma.c
952making qgamma.d from qgamma.c
953making rgamma.d from rgamma.c
954making dbeta.d from dbeta.c
955making pbeta.d from pbeta.c
956making qbeta.d from qbeta.c
957making rbeta.d from rbeta.c
958making punif.d from punif.c
959making dunif.d from dunif.c
960making qunif.d from qunif.c
961making runif.d from runif.c
962making dnorm.d from dnorm.c
963making pnorm.d from pnorm.c
964making qnorm.d from qnorm.c
965making dlnorm.d from dlnorm.c
966making rnorm.d from rnorm.c
967making qlnorm.d from qlnorm.c
968making plnorm.d from plnorm.c
969making rlnorm.d from rlnorm.c
970making df.d from df.c
971making pf.d from pf.c
972making qf.d from qf.c
973making dnf.d from dnf.c
974making rf.d from rf.c
975making dt.d from dt.c
976making qt.d from qt.c
977making pt.d from pt.c
978making rt.d from rt.c
979making dchisq.d from dchisq.c
980making dnt.d from dnt.c
981making pchisq.d from pchisq.c
982making rchisq.d from rchisq.c
983making qchisq.d from qchisq.c
984making rnchisq.d from rnchisq.c
985making dbinom.d from dbinom.c
986making qbinom.d from qbinom.c
987making pbinom.d from pbinom.c
988making rbinom.d from rbinom.c
989making rmultinom.d from rmultinom.c
990making dcauchy.d from dcauchy.c
991making pcauchy.d from pcauchy.c
992making qcauchy.d from qcauchy.c
993making rcauchy.d from rcauchy.c
994making dexp.d from dexp.c
995making qexp.d from qexp.c
996making pexp.d from pexp.c
997making dgeom.d from dgeom.c
998making rexp.d from rexp.c
999making pgeom.d from pgeom.c
1000making qgeom.d from qgeom.c
1001making rgeom.d from rgeom.c
1002making dhyper.d from dhyper.c
1003making phyper.d from phyper.c
1004making qhyper.d from qhyper.c
1005making rhyper.d from rhyper.c
1006making dnbinom.d from dnbinom.c
1007making pnbinom.d from pnbinom.c
1008making qnbinom.d from qnbinom.c
1009making rnbinom.d from rnbinom.c
1010making dpois.d from dpois.c
1011making ppois.d from ppois.c
1012making qpois.d from qpois.c
1013making rpois.d from rpois.c
1014making dweibull.d from dweibull.c
1015making pweibull.d from pweibull.c
1016making qweibull.d from qweibull.c
1017making rweibull.d from rweibull.c
1018making dlogis.d from dlogis.c
1019making plogis.d from plogis.c
1020making qlogis.d from qlogis.c
1021making rlogis.d from rlogis.c
1022making dnchisq.d from dnchisq.c
1023making pnchisq.d from pnchisq.c
1024making dnbeta.d from dnbeta.c
1025making qnchisq.d from qnchisq.c
1026making qnbeta.d from qnbeta.c
1027making pnbeta.d from pnbeta.c
1028making pnf.d from pnf.c
1029making pnt.d from pnt.c
1030making qnf.d from qnf.c
1031making qnt.d from qnt.c
1032making ptukey.d from ptukey.c
1033making qtukey.d from qtukey.c
1034making toms708.d from toms708.c
1035making wilcox.d from wilcox.c
1036making signrank.d from signrank.c
1037make[6]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/nmath'
1038gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c mlutils.c -o mlutils.o
1039gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c d1mach.c -o d1mach.o
1040gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c i1mach.c -o i1mach.o
1041gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c fmax2.c -o fmax2.o
1042gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c fmin2.c -o fmin2.o
1043gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c fprec.c -o fprec.o
1044gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c fround.c -o fround.o
1045gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c ftrunc.c -o ftrunc.o
1046gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c sign.c -o sign.o
1047gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c fsign.c -o fsign.o
1048gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c imax2.c -o imax2.o
1049gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c imin2.c -o imin2.o
1050gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c chebyshev.c -o chebyshev.o
1051gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c log1p.c -o log1p.o
1052gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c expm1.c -o expm1.o
1053gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c lgammacor.c -o lgammacor.o
1054gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c gammalims.c -o gammalims.o
1055gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c stirlerr.c -o stirlerr.o
1056gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c bd0.c -o bd0.o
1057gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c gamma.c -o gamma.o
1058gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c lgamma.c -o lgamma.o
1059gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c gamma_cody.c -o gamma_cody.o
1060gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c beta.c -o beta.o
1061gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c lbeta.c -o lbeta.o
1062gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c polygamma.c -o polygamma.o
1063gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c cospi.c -o cospi.o
1064gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c bessel_i.c -o bessel_i.o
1065gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c bessel_j.c -o bessel_j.o
1066gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c bessel_k.c -o bessel_k.o
1067gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c bessel_y.c -o bessel_y.o
1068gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c choose.c -o choose.o
1069gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c snorm.c -o snorm.o
1070gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c sexp.c -o sexp.o
1071gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c dgamma.c -o dgamma.o
1072gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c pgamma.c -o pgamma.o
1073gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c qgamma.c -o qgamma.o
1074gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c rgamma.c -o rgamma.o
1075gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c dbeta.c -o dbeta.o
1076gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c pbeta.c -o pbeta.o
1077gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c qbeta.c -o qbeta.o
1078gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c rbeta.c -o rbeta.o
1079gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c dunif.c -o dunif.o
1080gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c punif.c -o punif.o
1081gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c qunif.c -o qunif.o
1082gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c runif.c -o runif.o
1083gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c dnorm.c -o dnorm.o
1084gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c pnorm.c -o pnorm.o
1085gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c qnorm.c -o qnorm.o
1086gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c rnorm.c -o rnorm.o
1087gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c dlnorm.c -o dlnorm.o
1088gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c plnorm.c -o plnorm.o
1089gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c qlnorm.c -o qlnorm.o
1090gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c rlnorm.c -o rlnorm.o
1091gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c df.c -o df.o
1092gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c pf.c -o pf.o
1093gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c qf.c -o qf.o
1094gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c rf.c -o rf.o
1095gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c dnf.c -o dnf.o
1096gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c dt.c -o dt.o
1097gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c pt.c -o pt.o
1098gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c qt.c -o qt.o
1099gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c rt.c -o rt.o
1100gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c dnt.c -o dnt.o
1101gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c dchisq.c -o dchisq.o
1102gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c pchisq.c -o pchisq.o
1103gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c qchisq.c -o qchisq.o
1104gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c rchisq.c -o rchisq.o
1105gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c rnchisq.c -o rnchisq.o
1106gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c dbinom.c -o dbinom.o
1107gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c pbinom.c -o pbinom.o
1108gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c qbinom.c -o qbinom.o
1109gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c rbinom.c -o rbinom.o
1110gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c rmultinom.c -o rmultinom.o
1111gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c dcauchy.c -o dcauchy.o
1112gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c pcauchy.c -o pcauchy.o
1113gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c qcauchy.c -o qcauchy.o
1114gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c rcauchy.c -o rcauchy.o
1115gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c dexp.c -o dexp.o
1116gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c pexp.c -o pexp.o
1117gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c qexp.c -o qexp.o
1118gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c rexp.c -o rexp.o
1119gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c dgeom.c -o dgeom.o
1120gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c pgeom.c -o pgeom.o
1121gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c qgeom.c -o qgeom.o
1122gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c rgeom.c -o rgeom.o
1123gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c dhyper.c -o dhyper.o
1124gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c phyper.c -o phyper.o
1125gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c qhyper.c -o qhyper.o
1126gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c rhyper.c -o rhyper.o
1127gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c dnbinom.c -o dnbinom.o
1128gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c pnbinom.c -o pnbinom.o
1129gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c qnbinom.c -o qnbinom.o
1130gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c rnbinom.c -o rnbinom.o
1131gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c dpois.c -o dpois.o
1132gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c ppois.c -o ppois.o
1133gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c qpois.c -o qpois.o
1134gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c rpois.c -o rpois.o
1135gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c dweibull.c -o dweibull.o
1136gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c pweibull.c -o pweibull.o
1137gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c qweibull.c -o qweibull.o
1138gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c rweibull.c -o rweibull.o
1139gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c dlogis.c -o dlogis.o
1140gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c plogis.c -o plogis.o
1141gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c qlogis.c -o qlogis.o
1142gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c rlogis.c -o rlogis.o
1143gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c dnchisq.c -o dnchisq.o
1144gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c pnchisq.c -o pnchisq.o
1145gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c qnchisq.c -o qnchisq.o
1146gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c dnbeta.c -o dnbeta.o
1147gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c pnbeta.c -o pnbeta.o
1148gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c qnbeta.c -o qnbeta.o
1149gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c pnf.c -o pnf.o
1150gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c pnt.c -o pnt.o
1151gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c qnf.c -o qnf.o
1152gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c qnt.c -o qnt.o
1153gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c ptukey.c -o ptukey.o
1154gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c qtukey.c -o qtukey.o
1155gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c toms708.c -o toms708.o
1156gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c wilcox.c -o wilcox.o
1157gcc -I. -I../../src/include -I../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c signrank.c -o signrank.o
1158ar -cr libnmath.a mlutils.o d1mach.o i1mach.o fmax2.o fmin2.o fprec.o fround.o ftrunc.o sign.o fsign.o imax2.o imin2.o chebyshev.o log1p.o expm1.o lgammacor.o gammalims.o stirlerr.o bd0.o gamma.o lgamma.o gamma_cody.o beta.o lbeta.o polygamma.o cospi.o bessel_i.o bessel_j.o bessel_k.o bessel_y.o choose.o snorm.o sexp.o dgamma.o pgamma.o qgamma.o rgamma.o dbeta.o pbeta.o qbeta.o rbeta.o dunif.o punif.o qunif.o runif.o dnorm.o pnorm.o qnorm.o rnorm.o dlnorm.o plnorm.o qlnorm.o rlnorm.o df.o pf.o qf.o rf.o dnf.o dt.o pt.o qt.o rt.o dnt.o dchisq.o pchisq.o qchisq.o rchisq.o rnchisq.o dbinom.o pbinom.o qbinom.o rbinom.o rmultinom.o dcauchy.o pcauchy.o qcauchy.o rcauchy.o dexp.o pexp.o qexp.o rexp.o dgeom.o pgeom.o qgeom.o rgeom.o dhyper.o phyper.o qhyper.o rhyper.o dnbinom.o pnbinom.o qnbinom.o rnbinom.o dpois.o ppois.o qpois.o rpois.o dweibull.o pweibull.o qweibull.o rweibull.o dlogis.o plogis.o qlogis.o rlogis.o dnchisq.o pnchisq.o qnchisq.o dnbeta.o pnbeta.o qnbeta.o pnf.o pnt.o qnf.o qnt.o ptukey.o qtukey.o toms708.o wilcox.o signrank.o
1159ranlib libnmath.a
1160make[6]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/nmath'
1161make[5]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/nmath'
1162make[5]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/unix'
1163config.status: creating src/unix/Makefile
1164making system.d from system.c
1165making dynload.d from dynload.c
1166making Rembedded.d from Rembedded.c
1167making sys-unix.d from sys-unix.c
1168making sys-std.d from sys-std.c
1169making X11.d from X11.c
1170make[6]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/unix'
1171gcc -I. -I../../src/include -I../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c Rembedded.c -o Rembedded.o
1172gcc -I. -I../../src/include -I../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c dynload.c -o dynload.o
1173gcc -I. -I../../src/include -I../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c system.c -o system.o
1174gcc -I. -I../../src/include -I../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c sys-unix.c -o sys-unix.o
1175gcc -I. -I../../src/include -I../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c sys-std.c -o sys-std.o
1176gcc -I. -I../../src/include -I../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c X11.c -o X11.o
1177ar -cr libunix.a Rembedded.o dynload.o system.o sys-unix.o sys-std.o X11.o
1178ranlib libunix.a
1179make[6]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/unix'
1180make[6]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/unix'
1181gcc -I. -I../../src/include -I../../src/include   -DHAVE_CONFIG_H    -g -O2   -L/usr/local/sage-7/local/lib -Wl,-rpath,/usr/local/sage-7/local/lib  -DR_HOME='"/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src"' \
1182  -o Rscript ./Rscript.c
1183make[6]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/unix'
1184make[5]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/unix'
1185make[5]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/main'
1186config.status: creating src/main/Makefile
1187making CommandLineArgs.d from CommandLineArgs.c
1188making Rdynload.d from Rdynload.c
1189making Renviron.d from Renviron.c
1190making arithmetic.d from arithmetic.c
1191making apply.d from apply.c
1192making agrep.d from agrep.c
1193making RNG.d from RNG.c
1194making array.d from array.c
1195making attrib.d from attrib.c
1196making bind.d from bind.c
1197making builtin.d from builtin.c
1198making character.d from character.c
1199making colors.d from colors.c
1200making coerce.d from coerce.c
1201making complex.d from complex.c
1202making connections.d from connections.c
1203making cum.d from cum.c
1204making context.d from context.c
1205making datetime.d from datetime.c
1206making debug.d from debug.c
1207making dcf.d from dcf.c
1208making deparse.d from deparse.c
1209making devices.d from devices.c
1210making dotcode.d from dotcode.c
1211making dounzip.d from dounzip.c
1212making dstruct.d from dstruct.c
1213making duplicate.d from duplicate.c
1214making engine.d from engine.c
1215making errors.d from errors.c
1216making envir.d from envir.c
1217making eval.d from eval.c
1218making edit.d from edit.c
1219making format.d from format.c
1220making gram.d from gram.c
1221making graphics.d from graphics.c
1222making gevents.d from gevents.c
1223making gram-ex.d from gram-ex.c
1224making grep.d from grep.c
1225making identical.d from identical.c
1226making inspect.d from inspect.c
1227making internet.d from internet.c
1228making inlined.d from inlined.c
1229making lapack.d from lapack.c
1230making list.d from list.c
1231making iosupport.d from iosupport.c
1232making localecharset.d from localecharset.c
1233making logic.d from logic.c
1234making main.d from main.c
1235making match.d from match.c
1236making mapply.d from mapply.c
1237making memory.d from memory.c
1238making names.d from names.c
1239making objects.d from objects.c
1240making options.d from options.c
1241making platform.d from platform.c
1242making paste.d from paste.c
1243making plot3d.d from plot3d.c
1244making plotmath.d from plotmath.c
1245making plot.d from plot.c
1246making printarray.d from printarray.c
1247making print.d from print.c
1248making printvector.d from printvector.c
1249making printutils.d from printutils.c
1250making random.d from random.c
1251making raw.d from raw.c
1252making qsort.d from qsort.c
1253making registration.d from registration.c
1254making relop.d from relop.c
1255making rlocale.d from rlocale.c
1256making saveload.d from saveload.c
1257making seq.d from seq.c
1258making serialize.d from serialize.c
1259making sort.d from sort.c
1260making scan.d from scan.c
1261making split.d from split.c
1262making source.d from source.c
1263making startup.d from startup.c
1264making sprintf.d from sprintf.c
1265making subassign.d from subassign.c
1266making subscript.d from subscript.c
1267making subset.d from subset.c
1268making summary.d from summary.c
1269making sysutils.d from sysutils.c
1270making times.d from times.c
1271making unique.d from unique.c
1272making g_alab_her.d from g_alab_her.c
1273making util.d from util.c
1274making g_cntrlify.d from g_cntrlify.c
1275making g_fontdb.d from g_fontdb.c
1276making version.d from version.c
1277making g_her_glyph.d from g_her_glyph.c
1278making Rmain.d from Rmain.c
1279making alloca.d from alloca.c
1280making mkdtemp.d from mkdtemp.c
1281making strncasecmp.d from strncasecmp.c
1282making strdup.d from strdup.c
1283make[6]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/main'
1284gcc    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c CommandLineArgs.c -o CommandLineArgs.o
1285gcc    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c Rdynload.c -o Rdynload.o
1286gcc    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c Renviron.c -o Renviron.o
1287gcc    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c RNG.c -o RNG.o
1288gcc    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c agrep.c -o agrep.o
1289gcc    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c apply.c -o apply.o
1290gcc    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c arithmetic.c -o arithmetic.o
1291gcc    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c array.c -o array.o
1292gcc    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c attrib.c -o attrib.o
1293gcc    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c bind.c -o bind.o
1294gcc    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c builtin.c -o builtin.o
1295gcc    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c character.c -o character.o
1296gcc    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c coerce.c -o coerce.o
1297gcc    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c colors.c -o colors.o
1298gcc    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c complex.c -o complex.o
1299gcc    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c connections.c -o connections.o
1300gcc    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c context.c -o context.o
1301gcc    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c cum.c -o cum.o
1302gcc    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c dcf.c -o dcf.o
1303gcc    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c datetime.c -o datetime.o
1304gcc    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c debug.c -o debug.o
1305gcc    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c deparse.c -o deparse.o
1306gcc    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c devices.c -o devices.o
1307gcc    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c dotcode.c -o dotcode.o
1308gcc    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c dounzip.c -o dounzip.o
1309gcc    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c dstruct.c -o dstruct.o
1310gcc    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c duplicate.c -o duplicate.o
1311gcc    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c edit.c -o edit.o
1312gcc    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c engine.c -o engine.o
1313gcc    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c envir.c -o envir.o
1314gcc    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c errors.c -o errors.o
1315gcc    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c eval.c -o eval.o
1316gcc    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c format.c -o format.o
1317gcc    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c gevents.c -o gevents.o
1318gcc    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c gram.c -o gram.o
1319gcc    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c gram-ex.c -o gram-ex.o
1320gcc    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c graphics.c -o graphics.o
1321gcc    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c grep.c -o grep.o
1322gcc    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c identical.c -o identical.o
1323gcc    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c inlined.c -o inlined.o
1324gcc    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c inspect.c -o inspect.o
1325gcc    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c internet.c -o internet.o
1326gcc    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c iosupport.c -o iosupport.o
1327gcc    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c lapack.c -o lapack.o
1328gcc    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c list.c -o list.o
1329gcc    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c localecharset.c -o localecharset.o
1330gcc    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c logic.c -o logic.o
1331gcc    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c main.c -o main.o
1332main.c: In function 'dummy_ii':
1333main.c:1613:12: warning: function returns address of local variable [-Wreturn-local-addr]
1334     return (uintptr_t) &ii;
1335            ^
1336gcc    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c mapply.c -o mapply.o
1337gcc    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c match.c -o match.o
1338gcc    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c memory.c -o memory.o
1339gcc    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c names.c -o names.o
1340gcc    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c objects.c -o objects.o
1341gcc    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c options.c -o options.o
1342gcc    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c paste.c -o paste.o
1343gcc    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c platform.c -o platform.o
1344gcc    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c plot.c -o plot.o
1345gcc    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c plot3d.c -o plot3d.o
1346gcc    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c plotmath.c -o plotmath.o
1347gcc    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c print.c -o print.o
1348gcc    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c printarray.c -o printarray.o
1349gcc    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c printvector.c -o printvector.o
1350gcc    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c printutils.c -o printutils.o
1351gcc    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c qsort.c -o qsort.o
1352gcc    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c random.c -o random.o
1353gcc    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c raw.c -o raw.o
1354gcc    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c registration.c -o registration.o
1355gcc    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c relop.c -o relop.o
1356gcc    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c rlocale.c -o rlocale.o
1357gcc    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c saveload.c -o saveload.o
1358gcc    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c scan.c -o scan.o
1359gcc    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c seq.c -o seq.o
1360gcc    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c serialize.c -o serialize.o
1361gcc    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c sort.c -o sort.o
1362gcc    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c source.c -o source.o
1363gcc    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c split.c -o split.o
1364gcc    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c sprintf.c -o sprintf.o
1365gcc    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c startup.c -o startup.o
1366gcc    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c subassign.c -o subassign.o
1367gcc    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c subscript.c -o subscript.o
1368gcc    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c subset.c -o subset.o
1369gcc    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c summary.c -o summary.o
1370gcc    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c sysutils.c -o sysutils.o
1371gcc    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c times.c -o times.o
1372gcc    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c unique.c -o unique.o
1373gcc    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c util.c -o util.o
1374gcc    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c version.c -o version.o
1375gcc    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c g_alab_her.c -o g_alab_her.o
1376gcc    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c g_cntrlify.c -o g_cntrlify.o
1377gcc    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c g_fontdb.c -o g_fontdb.o
1378gcc    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c g_her_glyph.c -o g_her_glyph.o
1379gfortran  -fopenmp -fpic  -g -O2  -c xxxpr.f -o xxxpr.o
1380gcc -shared -fopenmp -L/usr/local/sage-7/local/lib -Wl,-rpath,/usr/local/sage-7/local/lib   -o libR.so CommandLineArgs.o Rdynload.o Renviron.o RNG.o agrep.o apply.o arithmetic.o array.o attrib.o bind.o builtin.o character.o coerce.o colors.o complex.o connections.o context.o cum.o dcf.o datetime.o debug.o deparse.o devices.o dotcode.o dounzip.o dstruct.o duplicate.o edit.o engine.o envir.o errors.o eval.o format.o gevents.o gram.o gram-ex.o graphics.o grep.o identical.o inlined.o inspect.o internet.o iosupport.o lapack.o list.o localecharset.o logic.o main.o mapply.o match.o memory.o names.o objects.o options.o paste.o platform.o plot.o plot3d.o plotmath.o print.o printarray.o printvector.o printutils.o qsort.o random.o raw.o registration.o relop.o rlocale.o saveload.o scan.o seq.o serialize.o sort.o source.o split.o sprintf.o startup.o subassign.o subscript.o subset.o summary.o sysutils.o times.o unique.o util.o version.o g_alab_her.o g_cntrlify.o g_fontdb.o g_her_glyph.o xxxpr.o   `ls ../unix/*.o ../appl/*.o ../nmath/*.o`    ../extra/tre/libtre.a     -L/usr/local/sage-7/local/lib -lf77blas -latlas -lgfortran -lm -lquadmath   -lreadline  -lpcre -llzma -lbz2 -lz -lrt -ldl -lm -licuuc -licui18n 
1381make[7]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/main'
1382mkdir -p -- /usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/bin/exec
1383mkdir -p -- /usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/lib
1384make[7]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/main'
1385make[6]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/main'
1386make[6]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/main'
1387gcc    -I../../src/extra   -I. -I../../src/include -I../../src/include   -I../../src/nmath -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c Rmain.c -o Rmain.o
1388gcc -Wl,--export-dynamic -fopenmp  -L../../lib -L/usr/local/sage-7/local/lib -Wl,-rpath,/usr/local/sage-7/local/lib  -o R.bin Rmain.o  -lR
1389make[7]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/main'
1390make[7]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/main'
1391make[6]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/main'
1392make[5]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/main'
1393make[5]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/modules'
1394make[6]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/modules/X11'
1395make[6]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/modules/internet'
1396make[6]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/modules/lapack'
1397making Rhttpd.d from Rhttpd.c
1398making devX11.d from devX11.c
1399making Lapack.d from Lapack.c
1400making rotated.d from rotated.c
1401making Rsock.d from Rsock.c
1402making rbitmap.d from rbitmap.c
1403making internet.d from internet.c
1404making libcurl.d from libcurl.c
1405making nanoftp.d from nanoftp.c
1406making nanohttp.d from nanohttp.c
1407making sock.d from sock.c
1408making sockconn.d from sockconn.c
1409make[7]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/modules/lapack'
1410gcc -I. -I../../../src/include -I../../../src/include  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c Lapack.c -o Lapack.o
1411make[7]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/modules/internet'
1412gcc -I. -I../../../src/include -I../../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2    -fvisibility=hidden -c Rhttpd.c -o Rhttpd.o
1413gcc -I. -I../../../src/include -I../../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2    -fvisibility=hidden -c Rsock.c -o Rsock.o
1414gcc -I. -I../../../src/include -I../../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2    -fvisibility=hidden -c internet.c -o internet.o
1415gcc -I. -I../../../src/include -I../../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2    -fvisibility=hidden -c libcurl.c -o libcurl.o
1416gcc -I. -I../../../src/include -I../../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2    -fvisibility=hidden -c nanoftp.c -o nanoftp.o
1417make[7]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/modules/X11'
1418gcc -I. -I../../../src/include -I../../../src/include  -I/usr/local/sage-7/local/include/freetype2 -I/usr/local/sage-7/local/include -I/usr/local/sage-7/local/include/libpng12 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I../../../src/library/grDevices/src/cairo  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c devX11.c -o devX11.o
1419gcc -I. -I../../../src/include -I../../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2    -fvisibility=hidden -c nanohttp.c -o nanohttp.o
1420gcc -I. -I../../../src/include -I../../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2    -fvisibility=hidden -c sock.c -o sock.o
1421gcc -I. -I../../../src/include -I../../../src/include   -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2    -fvisibility=hidden -c sockconn.c -o sockconn.o
1422gcc -I. -I../../../src/include -I../../../src/include  -I/usr/local/sage-7/local/include/freetype2 -I/usr/local/sage-7/local/include -I/usr/local/sage-7/local/include/libpng12 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I../../../src/library/grDevices/src/cairo  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c rotated.c -o rotated.o
1423gcc -I. -I../../../src/include -I../../../src/include  -I/usr/local/sage-7/local/include/freetype2 -I/usr/local/sage-7/local/include -I/usr/local/sage-7/local/include/libpng12 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I../../../src/library/grDevices/src/cairo  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c rbitmap.c -o rbitmap.o
1424gcc -I. -I../../../src/include -I../../../src/include  -I/usr/local/sage-7/local/include/freetype2 -I/usr/local/sage-7/local/include -I/usr/local/sage-7/local/include/libpng12 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I../../../src/library/grDevices/src/cairo  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c dataentry.c -o dataentry.o
1425gcc -shared -L../../../lib -L/usr/local/sage-7/local/lib -Wl,-rpath,/usr/local/sage-7/local/lib  -o internet.so Rhttpd.o Rsock.o internet.o libcurl.o nanoftp.o nanohttp.o sock.o sockconn.o -L/usr/lib/x86_64-linux-gnu -lcurl -lR 
1426make[8]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/modules/internet'
1427mkdir -p -- /usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/modules
1428make[8]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/modules/internet'
1429make[7]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/modules/internet'
1430make[6]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/modules/internet'
1431gcc -shared -L../../../lib -L/usr/local/sage-7/local/lib -Wl,-rpath,/usr/local/sage-7/local/lib  -o lapack.so  Lapack.o  -lR  -L/usr/local/sage-7/local/lib -llapack -lf77blas -lcblas -latlas -L/usr/local/sage-7/local/lib -lf77blas -latlas -lgfortran -lm -lquadmath
1432make[8]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/modules/lapack'
1433make[8]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/modules/lapack'
1434make[7]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/modules/lapack'
1435make[6]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/modules/lapack'
1436gcc -shared -L../../../lib -L/usr/local/sage-7/local/lib -Wl,-rpath,/usr/local/sage-7/local/lib  -o R_X11.so devX11.o rotated.o rbitmap.o -lSM -lICE -L/usr/local/sage-7/local/lib -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lpng12 -lz -lcairo -lX11 -lXext -lX11 -lXt -lXmu  -ltiff -ljpeg -lpng -lz -lR -lm
1437gcc -shared -L../../../lib -L/usr/local/sage-7/local/lib -Wl,-rpath,/usr/local/sage-7/local/lib  -o R_de.so dataentry.o -lSM -lICE -L/usr/local/sage-7/local/lib -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lpng12 -lz -lcairo -lX11 -lXext -lX11 -lXt -lXmu  -lR -lm
1438make[7]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/modules/X11'
1439make[7]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/modules/X11'
1440make[7]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/modules/X11'
1441make[6]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/modules/X11'
1442make[5]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/modules'
1443make[5]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library'
1444mkdir -p -- ../../library
1445make[6]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/profile'
1446building system startup profile
1447mkdir -p -- ../../../library/base/R
1448make[6]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/profile'
1449make[6]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/translations'
1450building package 'translations'
1451mkdir -p -- ../../../library/translations
1452make[7]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/translations'
1453make[7]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/translations'
1454make[6]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/translations'
1455make[6]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/base'
1456building package 'base'
1457make[7]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/base'
1458mkdir -p -- ../../../library/base/demo
1459make[7]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/base'
1460make[6]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/base'
1461make[6]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/tools'
1462building package 'tools'
1463mkdir -p -- ../../../library/tools
1464make[7]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/tools'
1465mkdir -p -- ../../../library/tools/R
1466make[7]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/tools'
1467make[7]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/tools'
1468make[8]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/tools/src'
1469making text.d from text.c
1470making Rmd5.d from Rmd5.c
1471making init.d from init.c
1472making md5.d from md5.c
1473making signals.d from signals.c
1474making install.d from install.c
1475making getfmts.d from getfmts.c
1476making http.d from http.c
1477gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main    -fvisibility=hidden -fpic  -g -O2   -c text.c -o text.o
1478making gramLatex.d from gramLatex.c
1479making gramRd.d from gramRd.c
1480gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main    -fvisibility=hidden -fpic  -g -O2   -c init.c -o init.o
1481gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main    -fvisibility=hidden -fpic  -g -O2   -c Rmd5.c -o Rmd5.o
1482gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main    -fvisibility=hidden -fpic  -g -O2   -c md5.c -o md5.o
1483gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main    -fvisibility=hidden -fpic  -g -O2   -c signals.c -o signals.o
1484gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main    -fvisibility=hidden -fpic  -g -O2   -c install.c -o install.o
1485gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main    -fvisibility=hidden -fpic  -g -O2   -c getfmts.c -o getfmts.o
1486gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main    -fvisibility=hidden -fpic  -g -O2   -c http.c -o http.o
1487gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main    -fvisibility=hidden -fpic  -g -O2   -c gramLatex.c -o gramLatex.o
1488gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main    -fvisibility=hidden -fpic  -g -O2   -c gramRd.c -o gramRd.o
1489gcc -shared -L../../../../lib -L/usr/local/sage-7/local/lib -Wl,-rpath,/usr/local/sage-7/local/lib -o tools.so text.o init.o Rmd5.o md5.o signals.o install.o getfmts.o http.o gramLatex.o gramRd.o -L../../../../lib -lR
1490make[9]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/tools/src'
1491mkdir -p -- ../../../../library/tools/libs
1492make[9]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/tools/src'
1493make[8]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/tools/src'
1494make[7]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/tools'
1495make[7]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/tools'
1496installing 'sysdata.rda'
1497make[7]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/tools'
1498make[6]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/tools'
1499make[6]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/compiler'
1500building package 'compiler'
1501mkdir -p -- ../../../library/compiler
1502make[7]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/compiler'
1503mkdir -p -- ../../../library/compiler/R
1504make[7]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/compiler'
1505make[7]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/compiler'
1506byte-compiling package 'compiler'
1507make[7]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/compiler'
1508make[6]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/compiler'
1509make[6]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/base'
1510byte-compiling package 'base'
1511make[6]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/base'
1512make[6]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/tools'
1513byte-compiling package 'tools'
1514make[6]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/tools'
1515make[6]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/utils'
1516building package 'utils'
1517mkdir -p -- ../../../library/utils
1518mkdir -p -- ../../../library/utils/doc
1519make[7]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/utils'
1520mkdir -p -- ../../../library/utils/R
1521mkdir -p -- ../../../library/utils/Sweave
1522mkdir -p -- ../../../library/utils/misc
1523make[7]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/utils'
1524make[7]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/utils'
1525make[8]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/utils/src'
1526making init.d from init.c
1527making io.d from io.c
1528gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main     -fvisibility=hidden -fpic  -g -O2   -c init.c -o init.o
1529making size.d from size.c
1530making sock.d from sock.c
1531gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main     -fvisibility=hidden -fpic  -g -O2   -c io.c -o io.o
1532making stubs.d from stubs.c
1533making utils.d from utils.c
1534gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main     -fvisibility=hidden -fpic  -g -O2   -c size.c -o size.o
1535gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main     -fvisibility=hidden -fpic  -g -O2   -c sock.c -o sock.o
1536gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main     -fvisibility=hidden -fpic  -g -O2   -c stubs.c -o stubs.o
1537gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main     -fvisibility=hidden -fpic  -g -O2   -c utils.c -o utils.o
1538gcc -shared -L../../../../lib -L/usr/local/sage-7/local/lib -Wl,-rpath,/usr/local/sage-7/local/lib -o utils.so init.o io.o size.o sock.o stubs.o utils.o -L../../../../lib -lR
1539make[9]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/utils/src'
1540mkdir -p -- ../../../../library/utils/libs
1541make[9]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/utils/src'
1542make[8]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/utils/src'
1543make[7]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/utils'
1544make[7]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/utils'
1545byte-compiling package 'utils'
1546make[7]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/utils'
1547make[6]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/utils'
1548make[6]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/grDevices'
1549building package 'grDevices'
1550mkdir -p -- ../../../library/grDevices
1551make[7]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/grDevices'
1552mkdir -p -- ../../../library/grDevices/R
1553mkdir -p -- ../../../library/grDevices/afm
1554mkdir -p -- ../../../library/grDevices/enc
1555mkdir -p -- ../../../library/grDevices/icc
1556make[7]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/grDevices'
1557make[7]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/grDevices'
1558make[8]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/grDevices/src'
1559making axis_scales.d from axis_scales.c
1560making chull.d from chull.c
1561making devices.d from devices.c
1562making init.d from init.c
1563making stubs.d from stubs.c
1564making colors.d from colors.c
1565making devCairo.d from devCairo.c
1566making devPicTeX.d from devPicTeX.c
1567making devQuartz.d from devQuartz.c
1568making devPS.d from devPS.c
1569gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H      -fpic  -g -O2   -c axis_scales.c -o axis_scales.o
1570gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H      -fpic  -g -O2   -c chull.c -o chull.o
1571gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H      -fpic  -g -O2   -c devices.c -o devices.o
1572gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H      -fpic  -g -O2   -c init.c -o init.o
1573gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H      -fpic  -g -O2   -c stubs.c -o stubs.o
1574gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H      -fpic  -g -O2   -c colors.c -o colors.o
1575gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H      -fpic  -g -O2   -c devCairo.c -o devCairo.o
1576gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H      -fpic  -g -O2   -c devPicTeX.c -o devPicTeX.o
1577gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H      -fpic  -g -O2   -c devPS.c -o devPS.o
1578gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H      -fpic  -g -O2   -c devQuartz.c -o devQuartz.o
1579gcc -shared -L../../../../lib -L/usr/local/sage-7/local/lib -Wl,-rpath,/usr/local/sage-7/local/lib -o grDevices.so axis_scales.o chull.o devices.o init.o stubs.o colors.o devCairo.o devPicTeX.o devPS.o devQuartz.o -lz -L../../../../lib -lR
1580make[9]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/grDevices/src'
1581make[10]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/grDevices/src/cairo'
1582mkdir -p -- ../../../../library/grDevices/libs
1583making cairoBM.d from cairoBM.c
1584make[11]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/grDevices/src/cairo'
1585make[12]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/grDevices/src/cairo'
1586gcc -I. -I../../../../../src/include -I../../../../../src/include -I/usr/local/sage-7/local/include/freetype2 -I/usr/local/sage-7/local/include -I/usr/local/sage-7/local/include/libpng12 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/freetype2 -I../../../../../src/modules/X11  -DHAVE_CONFIG_H   -fopenmp -fpic  -g -O2   -c cairoBM.c -o cairoBM.o
1587gcc -shared -L../../../../../lib -L/usr/local/sage-7/local/lib -Wl,-rpath,/usr/local/sage-7/local/lib  -o cairo.so cairoBM.o ../../../../../src/modules/X11/rbitmap.o -L/usr/local/sage-7/local/lib -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lpng12 -lz -lcairo -ltiff -ljpeg -lpng -lz -L../../../../../lib -lR -lm
1588make[12]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/grDevices/src/cairo'
1589make[11]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/grDevices/src/cairo'
1590make[10]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/grDevices/src/cairo'
1591make[9]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/grDevices/src'
1592make[8]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/grDevices/src'
1593make[7]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/grDevices'
1594make[7]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/grDevices'
1595byte-compiling package 'grDevices'
1596make[7]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/grDevices'
1597make[6]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/grDevices'
1598make[6]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/graphics'
1599building package 'graphics'
1600mkdir -p -- ../../../library/graphics
1601make[7]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/graphics'
1602mkdir -p -- ../../../library/graphics/R
1603make[7]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/graphics'
1604make[7]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/graphics'
1605make[8]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/graphics/src'
1606making init.d from init.c
1607making base.d from base.c
1608making graphics.d from graphics.c
1609making par.d from par.c
1610gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main    -fvisibility=hidden -fpic  -g -O2   -c init.c -o init.o
1611making plot.d from plot.c
1612making plot3d.d from plot3d.c
1613making stem.d from stem.c
1614gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main    -fvisibility=hidden -fpic  -g -O2   -c base.c -o base.o
1615gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main    -fvisibility=hidden -fpic  -g -O2   -c graphics.c -o graphics.o
1616gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main    -fvisibility=hidden -fpic  -g -O2   -c par.c -o par.o
1617gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main    -fvisibility=hidden -fpic  -g -O2   -c plot.c -o plot.o
1618gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main    -fvisibility=hidden -fpic  -g -O2   -c plot3d.c -o plot3d.o
1619gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I../../../../src/main    -fvisibility=hidden -fpic  -g -O2   -c stem.c -o stem.o
1620gcc -shared -L../../../../lib -L/usr/local/sage-7/local/lib -Wl,-rpath,/usr/local/sage-7/local/lib -o graphics.so init.o base.o graphics.o par.o plot.o plot3d.o stem.o -L../../../../lib -lR
1621make[9]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/graphics/src'
1622mkdir -p -- ../../../../library/graphics/libs
1623make[9]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/graphics/src'
1624make[8]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/graphics/src'
1625make[7]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/graphics'
1626make[7]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/graphics'
1627byte-compiling package 'graphics'
1628make[7]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/graphics'
1629make[6]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/graphics'
1630make[6]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/stats'
1631building package 'stats'
1632mkdir -p -- ../../../library/stats
1633make[7]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/stats'
1634mkdir -p -- ../../../library/stats/R
1635make[7]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/stats'
1636make[7]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/stats'
1637make[8]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/stats/src'
1638making init.d from init.c
1639making kmeans.d from kmeans.c
1640making ansari.d from ansari.c
1641making bandwidths.d from bandwidths.c
1642making chisqsim.d from chisqsim.c
1643making d2x2xk.d from d2x2xk.c
1644making fexact.d from fexact.c
1645making kendall.d from kendall.c
1646making ks.d from ks.c
1647making line.d from line.c
1648making smooth.d from smooth.c
1649making prho.d from prho.c
1650making swilk.d from swilk.c
1651making ksmooth.d from ksmooth.c
1652making monoSpl.d from monoSpl.c
1653making loessc.d from loessc.c
1654making isoreg.d from isoreg.c
1655making Srunmed.d from Srunmed.c
1656making dblcen.d from dblcen.c
1657making distance.d from distance.c
1658making hclust-utils.d from hclust-utils.c
1659making nls.d from nls.c
1660making rWishart.d from rWishart.c
1661making HoltWinters.d from HoltWinters.c
1662making PPsum.d from PPsum.c
1663making arima.d from arima.c
1664making burg.d from burg.c
1665making filter.d from filter.c
1666making mAR.d from mAR.c
1667making pacf.d from pacf.c
1668making starma.d from starma.c
1669making port.d from port.c
1670making family.d from family.c
1671making sbart.d from sbart.c
1672making approx.d from approx.c
1673making loglin.d from loglin.c
1674making lowess.d from lowess.c
1675making massdist.d from massdist.c
1676making splines.d from splines.c
1677making lm.d from lm.c
1678making complete_cases.d from complete_cases.c
1679making cov.d from cov.c
1680making deriv.d from deriv.c
1681making fft.d from fft.c
1682making fourier.d from fourier.c
1683making model.d from model.c
1684making optim.d from optim.c
1685making integrate.d from integrate.c
1686making optimize.d from optimize.c
1687making random.d from random.c
1688making zeroin.d from zeroin.c
1689making distn.d from distn.c
1690making rcont.d from rcont.c
1691making influence.d from influence.c
1692gcc -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2   -c init.c -o init.o
1693gcc -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2   -c kmeans.c -o kmeans.o
1694gcc -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2   -c ansari.c -o ansari.o
1695gcc -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2   -c bandwidths.c -o bandwidths.o
1696gcc -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2   -c chisqsim.c -o chisqsim.o
1697gcc -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2   -c d2x2xk.c -o d2x2xk.o
1698gcc -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2   -c fexact.c -o fexact.o
1699gcc -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2   -c kendall.c -o kendall.o
1700gcc -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2   -c ks.c -o ks.o
1701gcc -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2   -c line.c -o line.o
1702gcc -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2   -c smooth.c -o smooth.o
1703gcc -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2   -c prho.c -o prho.o
1704gcc -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2   -c swilk.c -o swilk.o
1705gcc -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2   -c ksmooth.c -o ksmooth.o
1706gcc -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2   -c loessc.c -o loessc.o
1707gcc -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2   -c monoSpl.c -o monoSpl.o
1708gcc -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2   -c isoreg.c -o isoreg.o
1709gcc -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2   -c Srunmed.c -o Srunmed.o
1710gcc -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2   -c dblcen.c -o dblcen.o
1711gcc -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2   -c distance.c -o distance.o
1712gcc -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2   -c hclust-utils.c -o hclust-utils.o
1713gcc -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2   -c nls.c -o nls.o
1714gcc -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2   -c rWishart.c -o rWishart.o
1715gcc -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2   -c HoltWinters.c -o HoltWinters.o
1716gcc -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2   -c PPsum.c -o PPsum.o
1717gcc -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2   -c arima.c -o arima.o
1718gcc -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2   -c burg.c -o burg.o
1719gcc -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2   -c filter.c -o filter.o
1720gcc -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2   -c mAR.c -o mAR.o
1721gcc -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2   -c pacf.c -o pacf.o
1722gcc -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2   -c starma.c -o starma.o
1723gcc -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2   -c port.c -o port.o
1724gcc -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2   -c family.c -o family.o
1725gcc -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2   -c sbart.c -o sbart.o
1726gcc -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2   -c approx.c -o approx.o
1727gcc -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2   -c loglin.c -o loglin.o
1728gcc -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2   -c lowess.c -o lowess.o
1729gcc -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2   -c massdist.c -o massdist.o
1730gcc -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2   -c splines.c -o splines.o
1731gcc -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2   -c lm.c -o lm.o
1732gcc -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2   -c complete_cases.c -o complete_cases.o
1733gcc -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2   -c cov.c -o cov.o
1734gcc -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2   -c deriv.c -o deriv.o
1735gcc -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2   -c fft.c -o fft.o
1736gcc -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2   -c fourier.c -o fourier.o
1737gcc -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2   -c model.c -o model.o
1738gcc -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2   -c optim.c -o optim.o
1739gcc -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2   -c optimize.c -o optimize.o
1740gcc -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2   -c integrate.c -o integrate.o
1741gcc -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2   -c random.c -o random.o
1742gcc -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2   -c distn.c -o distn.o
1743gcc -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2   -c zeroin.c -o zeroin.o
1744gcc -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2   -c rcont.c -o rcont.o
1745gcc -I -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fopenmp -fvisibility=hidden -fpic  -g -O2   -c influence.c -o influence.o
1746gfortran  -fvisibility=hidden -fpic  -g -O2  -c bsplvd.f -o bsplvd.o
1747gfortran  -fvisibility=hidden -fpic  -g -O2  -c bvalue.f -o bvalue.o
1748gfortran  -fvisibility=hidden -fpic  -g -O2  -c bvalus.f -o bvalus.o
1749gfortran  -fvisibility=hidden -fpic  -g -O2  -c loessf.f -o loessf.o
1750gfortran  -fvisibility=hidden -fpic  -g -O2  -c ppr.f -o ppr.o
1751gfortran  -fvisibility=hidden -fpic  -g -O2  -c qsbart.f -o qsbart.o
1752gfortran  -fvisibility=hidden -fpic  -g -O2  -c sgram.f -o sgram.o
1753gfortran  -fvisibility=hidden -fpic  -g -O2  -c sinerp.f -o sinerp.o
1754gfortran  -fvisibility=hidden -fpic  -g -O2  -c sslvrg.f -o sslvrg.o
1755gfortran  -fvisibility=hidden -fpic  -g -O2  -c stxwx.f -o stxwx.o
1756gfortran  -fvisibility=hidden -fpic  -g -O2  -c hclust.f -o hclust.o
1757gfortran  -fvisibility=hidden -fpic  -g -O2  -c kmns.f -o kmns.o
1758gfortran  -fvisibility=hidden -fpic  -g -O2  -c eureka.f -o eureka.o
1759gfortran  -fvisibility=hidden -fpic  -g -O2  -c stl.f -o stl.o
1760gfortran -fpic  -g -O2 -ffloat-store -c portsrc.f -o portsrc.o
1761gfortran  -fvisibility=hidden -fpic  -g -O2  -c lminfl.f -o lminfl.o
1762gcc -shared -L../../../../lib -L/usr/local/sage-7/local/lib -Wl,-rpath,/usr/local/sage-7/local/lib -o stats.so init.o kmeans.o ansari.o bandwidths.o chisqsim.o d2x2xk.o fexact.o kendall.o ks.o line.o smooth.o prho.o swilk.o ksmooth.o loessc.o monoSpl.o isoreg.o Srunmed.o dblcen.o distance.o hclust-utils.o nls.o rWishart.o HoltWinters.o PPsum.o arima.o burg.o filter.o mAR.o pacf.o starma.o port.o family.o sbart.o approx.o loglin.o lowess.o massdist.o splines.o lm.o complete_cases.o cov.o deriv.o fft.o fourier.o model.o optim.o optimize.o integrate.o random.o distn.o zeroin.o rcont.o influence.o bsplvd.o bvalue.o bvalus.o loessf.o ppr.o qsbart.o sgram.o sinerp.o sslvrg.o stxwx.o hclust.o kmns.o eureka.o stl.o portsrc.o lminfl.o -fopenmp -L/usr/local/sage-7/local/lib -llapack -lf77blas -lcblas -latlas -L/usr/local/sage-7/local/lib -lf77blas -latlas -lgfortran -lm -lquadmath -L../../../../lib -lR
1763make[9]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/stats/src'
1764mkdir -p -- ../../../../library/stats/libs
1765make[9]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/stats/src'
1766make[8]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/stats/src'
1767make[7]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/stats'
1768make[7]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/stats'
1769byte-compiling package 'stats'
1770make[7]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/stats'
1771make[6]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/stats'
1772make[6]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/datasets'
1773building package 'datasets'
1774mkdir -p -- ../../../library/datasets
1775make[7]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/datasets'
1776make[7]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/datasets'
1777mkdir -p -- ../../../library/datasets/data
1778make[6]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/datasets'
1779make[6]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/methods'
1780building package 'methods'
1781mkdir -p -- ../../../library/methods
1782make[7]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/methods'
1783mkdir -p -- ../../../library/methods/R
1784make[7]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/methods'
1785make[7]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/methods'
1786make[8]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/methods/src'
1787making do_substitute_direct.d from do_substitute_direct.c
1788making init.d from init.c
1789making methods_list_dispatch.d from methods_list_dispatch.c
1790making slot.d from slot.c
1791gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fvisibility=hidden -fpic  -g -O2   -c do_substitute_direct.c -o do_substitute_direct.o
1792making class_support.d from class_support.c
1793making tests.d from tests.c
1794making utils.d from utils.c
1795gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fvisibility=hidden -fpic  -g -O2   -c init.c -o init.o
1796gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fvisibility=hidden -fpic  -g -O2   -c methods_list_dispatch.c -o methods_list_dispatch.o
1797gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fvisibility=hidden -fpic  -g -O2   -c slot.c -o slot.o
1798gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fvisibility=hidden -fpic  -g -O2   -c class_support.c -o class_support.o
1799gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fvisibility=hidden -fpic  -g -O2   -c tests.c -o tests.o
1800gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fvisibility=hidden -fpic  -g -O2   -c utils.c -o utils.o
1801gcc -shared -L../../../../lib -L/usr/local/sage-7/local/lib -Wl,-rpath,/usr/local/sage-7/local/lib -o methods.so do_substitute_direct.o init.o methods_list_dispatch.o slot.o class_support.o tests.o utils.o -L../../../../lib -lR
1802make[9]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/methods/src'
1803mkdir -p -- ../../../../library/methods/libs
1804make[9]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/methods/src'
1805make[8]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/methods/src'
1806make[7]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/methods'
1807make[7]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/methods'
1808byte-compiling 'methods'
1809initializing class and method definitions ... done
1810make[7]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/methods'
1811make[6]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/methods'
1812make[6]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/grid'
1813building package 'grid'
1814mkdir -p -- ../../../library/grid
1815mkdir -p -- ../../../library/grid/doc
1816make[7]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/grid'
1817mkdir -p -- ../../../library/grid/R
1818make[7]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/grid'
1819make[7]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/grid'
1820make[8]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/grid/src'
1821making gpar.d from gpar.c
1822making grid.d from grid.c
1823making just.d from just.c
1824making layout.d from layout.c
1825making matrix.d from matrix.c
1826making register.d from register.c
1827making state.d from state.c
1828making unit.d from unit.c
1829gcc -I../../../../include -DNDEBUG     -fvisibility=hidden -fpic  -g -O2   -c gpar.c -o gpar.o
1830gcc -I../../../../include -DNDEBUG     -fvisibility=hidden -fpic  -g -O2   -c grid.c -o grid.o
1831gcc -I../../../../include -DNDEBUG     -fvisibility=hidden -fpic  -g -O2   -c just.c -o just.o
1832gcc -I../../../../include -DNDEBUG     -fvisibility=hidden -fpic  -g -O2   -c layout.c -o layout.o
1833making util.d from util.c
1834making viewport.d from viewport.c
1835gcc -I../../../../include -DNDEBUG     -fvisibility=hidden -fpic  -g -O2   -c matrix.c -o matrix.o
1836gcc -I../../../../include -DNDEBUG     -fvisibility=hidden -fpic  -g -O2   -c register.c -o register.o
1837gcc -I../../../../include -DNDEBUG     -fvisibility=hidden -fpic  -g -O2   -c state.c -o state.o
1838gcc -I../../../../include -DNDEBUG     -fvisibility=hidden -fpic  -g -O2   -c unit.c -o unit.o
1839gcc -I../../../../include -DNDEBUG     -fvisibility=hidden -fpic  -g -O2   -c util.c -o util.o
1840gcc -I../../../../include -DNDEBUG     -fvisibility=hidden -fpic  -g -O2   -c viewport.c -o viewport.o
1841gcc -shared -L../../../../lib -L/usr/local/sage-7/local/lib -Wl,-rpath,/usr/local/sage-7/local/lib -o grid.so gpar.o grid.o just.o layout.o matrix.o register.o state.o unit.o util.o viewport.o -L../../../../lib -lR
1842make[9]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/grid/src'
1843mkdir -p -- ../../../../library/grid/libs
1844make[9]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/grid/src'
1845make[8]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/grid/src'
1846make[7]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/grid'
1847make[7]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/grid'
1848byte-compiling package 'grid'
1849make[7]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/grid'
1850make[6]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/grid'
1851make[6]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/splines'
1852building package 'splines'
1853mkdir -p -- ../../../library/splines
1854make[7]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/splines'
1855mkdir -p -- ../../../library/splines/R
1856make[7]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/splines'
1857make[7]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/splines'
1858make[8]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/splines/src'
1859gcc -I../../../../include -DNDEBUG      -fpic  -g -O2   -c splines.c -o splines.o
1860making splines.d from splines.c
1861gcc -shared -L../../../../lib -L/usr/local/sage-7/local/lib -Wl,-rpath,/usr/local/sage-7/local/lib -o splines.so splines.o -L../../../../lib -lR
1862make[9]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/splines/src'
1863mkdir -p -- ../../../../library/splines/libs
1864make[9]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/splines/src'
1865make[8]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/splines/src'
1866make[7]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/splines'
1867make[7]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/splines'
1868byte-compiling package 'splines'
1869make[7]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/splines'
1870make[6]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/splines'
1871make[6]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/stats4'
1872building package 'stats4'
1873mkdir -p -- ../../../library/stats4
1874make[7]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/stats4'
1875mkdir -p -- ../../../library/stats4/R
1876make[7]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/stats4'
1877make[7]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/stats4'
1878byte-compiling package 'stats4'
1879make[7]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/stats4'
1880make[6]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/stats4'
1881make[6]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/tcltk'
1882building package 'tcltk'
1883mkdir -p -- ../../../library/tcltk/R
1884make[7]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/tcltk'
1885mkdir -p -- ../../../library/tcltk/exec
1886make[7]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/tcltk'
1887make[7]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/tcltk/src'
1888gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/include/tcl8.6 -I/usr/include/tcl8.6      -fpic  -g -O2   -c init.c -o init.o
1889gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/include/tcl8.6 -I/usr/include/tcl8.6      -fpic  -g -O2   -c tcltk.c -o tcltk.o
1890gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/include/tcl8.6 -I/usr/include/tcl8.6      -fpic  -g -O2   -c tcltk_unix.c -o tcltk_unix.o
1891making init.d from init.c
1892making tcltk.d from tcltk.c
1893making tcltk_unix.d from tcltk_unix.c
1894gcc -shared -L../../../../lib -L/usr/local/sage-7/local/lib -Wl,-rpath,/usr/local/sage-7/local/lib -o tcltk.so init.o tcltk.o tcltk_unix.o -L/usr/lib/x86_64-linux-gnu -ltcl8.6 -L/usr/lib/x86_64-linux-gnu -ltk8.6 -lX11 -lXss -lXext -lm -L../../../../lib -lR
1895make[8]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/tcltk/src'
1896mkdir -p -- ../../../../library/tcltk/libs
1897make[8]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/tcltk/src'
1898make[7]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/tcltk/src'
1899make[7]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/tcltk'
1900byte-compiling package 'tcltk'
1901make[7]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/tcltk'
1902make[6]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/tcltk'
1903make[6]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/parallel'
1904building package 'parallel'
1905mkdir -p -- ../../../library/parallel
1906mkdir -p -- ../../../library/parallel/doc
1907make[7]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/parallel'
1908mkdir -p -- ../../../library/parallel/R
1909make[7]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/parallel'
1910make[7]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/parallel'
1911make[8]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/parallel/src'
1912gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fvisibility=hidden -fpic  -g -O2   -c init.c -o init.o
1913gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fvisibility=hidden -fpic  -g -O2   -c rngstream.c -o rngstream.o
1914gcc -I../../../../include -DNDEBUG -I../../../include -I../../../../src/include -DHAVE_CONFIG_H    -fvisibility=hidden -fpic  -g -O2   -c fork.c -o fork.o
1915making init.d from init.c
1916making rngstream.d from rngstream.c
1917making fork.d from fork.c
1918gcc -shared -L../../../../lib -L/usr/local/sage-7/local/lib -Wl,-rpath,/usr/local/sage-7/local/lib -o parallel.so init.o rngstream.o fork.o -L../../../../lib -lR
1919make[9]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/parallel/src'
1920mkdir -p -- ../../../../library/parallel/libs
1921make[9]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/parallel/src'
1922make[8]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/parallel/src'
1923make[7]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/parallel'
1924make[7]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/parallel'
1925byte-compiling package 'parallel'
1926make[7]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/parallel'
1927make[6]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/parallel'
1928make[6]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/base'
1929make[6]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/base'
1930installing parsed NAMESPACE files
1931make[5]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library'
1932make[4]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src'
1933make[4]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/tests'
1934make[4]: Nothing to be done for 'R'.
1935make[4]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/tests'
1936you should 'make docs' now ...
1937make[3]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src'
1938make[3]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src'
1939make[4]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/m4'
1940make[4]: Nothing to be done for 'R'.
1941make[4]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/m4'
1942make[4]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/tools'
1943make[4]: Nothing to be done for 'R'.
1944make[4]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/tools'
1945make[4]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/doc'
1946make[5]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/doc/html'
1947make[5]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/doc/html'
1948make[5]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/doc/manual'
1949make[5]: Nothing to be done for 'R'.
1950make[5]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/doc/manual'
1951make[4]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/doc'
1952make[4]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/etc'
1953make[4]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/etc'
1954make[4]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/share'
1955make[4]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/share'
1956make[4]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src'
1957make[5]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/scripts'
1958make[6]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/scripts'
1959make[6]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/scripts'
1960make[5]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/scripts'
1961make[5]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/include'
1962make[6]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/include/R_ext'
1963make[6]: Nothing to be done for 'R'.
1964make[6]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/include/R_ext'
1965make[5]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/include'
1966make[5]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/extra'
1967make[6]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/extra/tre'
1968make[7]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/extra/tre'
1969make[7]: 'Makedeps' is up to date.
1970make[7]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/extra/tre'
1971make[7]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/extra/tre'
1972make[7]: 'libtre.a' is up to date.
1973make[7]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/extra/tre'
1974make[6]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/extra/tre'
1975make[5]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/extra'
1976make[5]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/appl'
1977make[6]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/appl'
1978make[6]: 'libappl.a' is up to date.
1979make[6]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/appl'
1980make[5]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/appl'
1981make[5]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/nmath'
1982make[6]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/nmath'
1983make[6]: 'libnmath.a' is up to date.
1984make[6]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/nmath'
1985make[5]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/nmath'
1986make[5]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/unix'
1987make[6]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/unix'
1988make[6]: 'libunix.a' is up to date.
1989make[6]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/unix'
1990make[6]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/unix'
1991gcc -I. -I../../src/include -I../../src/include   -DHAVE_CONFIG_H    -g -O2   -L/usr/local/sage-7/local/lib -Wl,-rpath,/usr/local/sage-7/local/lib  -DR_HOME='"/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src"' \
1992  -o Rscript ./Rscript.c
1993make[6]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/unix'
1994make[5]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/unix'
1995make[5]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/main'
1996make[6]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/main'
1997make[7]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/main'
1998/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/lib/libR.so is unchanged
1999make[7]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/main'
2000make[6]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/main'
2001make[6]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/main'
2002make[7]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/main'
2003/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/bin/exec/R is unchanged
2004make[7]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/main'
2005make[6]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/main'
2006make[5]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/main'
2007make[5]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/modules'
2008make[6]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/modules/lapack'
2009make[6]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/modules/internet'
2010make[6]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/modules/X11'
2011make[7]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/modules/internet'
2012make[7]: 'internet.so' is up to date.
2013make[7]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/modules/internet'
2014make[6]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/modules/internet'
2015make[7]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/modules/lapack'
2016make[7]: 'lapack.so' is up to date.
2017make[7]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/modules/lapack'
2018make[6]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/modules/lapack'
2019make[7]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/modules/X11'
2020make[7]: 'R_X11.so' is up to date.
2021make[7]: 'R_de.so' is up to date.
2022make[7]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/modules/X11'
2023make[7]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/modules/X11'
2024/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/modules/R_X11.so is unchanged
2025/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/modules/R_de.so is unchanged
2026make[7]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/modules/X11'
2027make[6]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/modules/X11'
2028make[5]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/modules'
2029make[5]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library'
2030make[6]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/profile'
2031building system startup profile
2032make[6]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/profile'
2033make[6]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/translations'
2034building package 'translations'
2035make[7]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/translations'
2036make[7]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/translations'
2037make[6]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/translations'
2038make[6]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/base'
2039building package 'base'
2040make[7]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/base'
2041all.R is unchanged
2042make[7]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/base'
2043make[6]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/base'
2044make[6]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/tools'
2045building package 'tools'
2046make[7]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/tools'
2047all.R is unchanged
2048make[7]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/tools'
2049make[7]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/tools'
2050make[8]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/tools/src'
2051make[9]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/tools/src'
2052../../../../library/tools/libs/tools.so is unchanged
2053make[9]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/tools/src'
2054make[8]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/tools/src'
2055make[7]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/tools'
2056make[7]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/tools'
2057installing 'sysdata.rda'
2058make[7]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/tools'
2059make[6]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/tools'
2060make[6]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/compiler'
2061building package 'compiler'
2062make[7]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/compiler'
2063all.R is unchanged
2064make[7]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/compiler'
2065make[7]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/compiler'
2066make[7]: Nothing to be done for 'mklazycomp'.
2067make[7]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/compiler'
2068make[6]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/compiler'
2069make[6]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/base'
2070make[6]: Nothing to be done for 'mklazycomp'.
2071make[6]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/base'
2072make[6]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/tools'
2073make[6]: Nothing to be done for 'mklazycomp'.
2074make[6]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/tools'
2075make[6]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/utils'
2076building package 'utils'
2077make[7]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/utils'
2078make[7]: Nothing to be done for 'iconvlist'.
2079all.R is unchanged
2080make[7]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/utils'
2081make[7]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/utils'
2082make[8]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/utils/src'
2083make[9]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/utils/src'
2084../../../../library/utils/libs/utils.so is unchanged
2085make[9]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/utils/src'
2086make[8]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/utils/src'
2087make[7]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/utils'
2088make[7]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/utils'
2089make[7]: Nothing to be done for 'mklazycomp'.
2090make[7]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/utils'
2091make[6]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/utils'
2092make[6]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/grDevices'
2093building package 'grDevices'
2094make[7]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/grDevices'
2095all.R is unchanged
2096make[7]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/grDevices'
2097make[7]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/grDevices'
2098make[8]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/grDevices/src'
2099make[9]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/grDevices/src'
2100make[10]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/grDevices/src/cairo'
2101../../../../library/grDevices/libs/grDevices.so is unchanged
2102make[11]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/grDevices/src/cairo'
2103make[12]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/grDevices/src/cairo'
2104make[12]: 'cairo.so' is up to date.
2105make[12]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/grDevices/src/cairo'
2106make[11]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/grDevices/src/cairo'
2107make[10]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/grDevices/src/cairo'
2108make[9]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/grDevices/src'
2109make[8]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/grDevices/src'
2110make[7]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/grDevices'
2111make[7]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/grDevices'
2112make[7]: Nothing to be done for 'mklazycomp'.
2113make[7]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/grDevices'
2114make[6]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/grDevices'
2115make[6]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/graphics'
2116building package 'graphics'
2117make[7]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/graphics'
2118all.R is unchanged
2119make[7]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/graphics'
2120make[7]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/graphics'
2121make[8]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/graphics/src'
2122make[9]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/graphics/src'
2123../../../../library/graphics/libs/graphics.so is unchanged
2124make[9]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/graphics/src'
2125make[8]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/graphics/src'
2126make[7]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/graphics'
2127make[7]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/graphics'
2128make[7]: Nothing to be done for 'mklazycomp'.
2129make[7]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/graphics'
2130make[6]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/graphics'
2131make[6]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/stats'
2132building package 'stats'
2133make[7]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/stats'
2134all.R is unchanged
2135make[7]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/stats'
2136make[7]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/stats'
2137make[8]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/stats/src'
2138make[9]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/stats/src'
2139../../../../library/stats/libs/stats.so is unchanged
2140make[9]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/stats/src'
2141make[8]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/stats/src'
2142make[7]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/stats'
2143make[7]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/stats'
2144make[7]: Nothing to be done for 'mklazycomp'.
2145make[7]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/stats'
2146make[6]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/stats'
2147make[6]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/datasets'
2148building package 'datasets'
2149make[7]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/datasets'
2150make[7]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/datasets'
2151make[6]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/datasets'
2152make[6]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/methods'
2153building package 'methods'
2154make[7]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/methods'
2155all.R is unchanged
2156make[7]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/methods'
2157make[7]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/methods'
2158make[8]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/methods/src'
2159make[9]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/methods/src'
2160../../../../library/methods/libs/methods.so is unchanged
2161make[9]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/methods/src'
2162make[8]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/methods/src'
2163make[7]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/methods'
2164make[7]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/methods'
2165make[7]: Nothing to be done for 'RfilesLazy'.
2166make[7]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/methods'
2167make[6]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/methods'
2168make[6]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/grid'
2169building package 'grid'
2170make[7]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/grid'
2171all.R is unchanged
2172make[7]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/grid'
2173make[7]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/grid'
2174make[8]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/grid/src'
2175make[9]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/grid/src'
2176../../../../library/grid/libs/grid.so is unchanged
2177make[9]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/grid/src'
2178make[8]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/grid/src'
2179make[7]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/grid'
2180make[7]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/grid'
2181make[7]: Nothing to be done for 'mklazycomp'.
2182make[7]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/grid'
2183make[6]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/grid'
2184make[6]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/splines'
2185building package 'splines'
2186make[7]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/splines'
2187all.R is unchanged
2188make[7]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/splines'
2189make[7]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/splines'
2190make[8]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/splines/src'
2191make[9]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/splines/src'
2192../../../../library/splines/libs/splines.so is unchanged
2193make[9]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/splines/src'
2194make[8]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/splines/src'
2195make[7]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/splines'
2196make[7]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/splines'
2197make[7]: Nothing to be done for 'mklazycomp'.
2198make[7]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/splines'
2199make[6]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/splines'
2200make[6]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/stats4'
2201building package 'stats4'
2202make[7]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/stats4'
2203all.R is unchanged
2204make[7]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/stats4'
2205make[7]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/stats4'
2206make[7]: Nothing to be done for 'mklazycomp'.
2207make[7]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/stats4'
2208make[6]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/stats4'
2209make[6]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/tcltk'
2210building package 'tcltk'
2211all.R is unchanged
2212make[7]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/tcltk'
2213make[7]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/tcltk'
2214make[7]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/tcltk/src'
2215make[8]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/tcltk/src'
2216../../../../library/tcltk/libs/tcltk.so is unchanged
2217make[8]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/tcltk/src'
2218make[7]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/tcltk/src'
2219make[7]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/tcltk'
2220make[7]: Nothing to be done for 'mklazycomp'.
2221make[7]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/tcltk'
2222make[6]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/tcltk'
2223make[6]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/parallel'
2224building package 'parallel'
2225make[7]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/parallel'
2226all.R is unchanged
2227make[7]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/parallel'
2228make[7]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/parallel'
2229make[8]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/parallel/src'
2230make[9]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/parallel/src'
2231../../../../library/parallel/libs/parallel.so is unchanged
2232make[9]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/parallel/src'
2233make[8]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/parallel/src'
2234make[7]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/parallel'
2235make[7]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/parallel'
2236make[7]: Nothing to be done for 'mklazycomp'.
2237make[7]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/parallel'
2238make[6]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/parallel'
2239make[6]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/base'
2240make[6]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/base'
2241installing parsed NAMESPACE files
2242make[5]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library'
2243make[4]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src'
2244make[4]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/tests'
2245make[4]: Nothing to be done for 'R'.
2246make[4]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/tests'
2247you should 'make docs' now ...
2248make[4]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/doc'
2249creating NEWS
2250creating NEWS.pdf
2251make[5]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/doc/manual'
2252creating doc/manual/R-FAQ.html
2253creating doc/manual/version.texi
2254creating doc/manual/R-admin.html
2255creating doc/manual/R-data.html
2256creating doc/manual/R-exts.html
2257creating doc/manual/R-intro.html
2258creating doc/manual/R-ints.html
2259creating doc/manual/R-lang.html
2260make[6]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/doc/html'
2261make[6]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/doc/html'
2262make[5]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/doc/manual'
2263make[4]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/doc'
2264make[4]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library'
2265make[5]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library'
2266installing parsed Rd
2267make[6]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library'
2268  datasets
2269  grid
2270  grDevices
2271  splines
2272  tcltk
2273  graphics
2274  methods
2275  compiler
2276  stats4
2277  parallel
2278  tools
2279  utils
2280  stats
2281  base
2282make[6]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library'
2283make[5]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library'
2284make[5]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library'
2285building/updating package metadata ...
2286make[5]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library'
2287make[5]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library'
2288writing package indices
2289make[6]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library'
2290make[6]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library'
2291make[5]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library'
2292make[4]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library'
2293make[4]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/Recommended'
2294make[5]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/Recommended'
2295begin installing recommended package MASS
2296begin installing recommended package lattice
2297begin installing recommended package survival
2298begin installing recommended package codetools
2299begin installing recommended package foreign
2300begin installing recommended package KernSmooth
2301begin installing recommended package rpart
2302begin installing recommended package nnet
2303* installing *source* package 'codetools' ...
2304** package 'codetools' successfully unpacked and MD5 sums checked
2305** R
2306** byte-compile and prepare package for lazy loading
2307** help
2308*** installing help indices
2309** building package indices
2310** testing if installed package can be loaded
2311* DONE (codetools)
2312* installing *source* package 'nnet' ...
2313** package 'nnet' successfully unpacked and MD5 sums checked
2314** libs
2315make[6]: Entering directory '/tmp/RtmpRAPFvM/R.INSTALL6fd15c33034c/nnet/src'
2316gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG      -fpic  -g -O2   -c nnet.c -o nnet.o
2317gcc -shared -L/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/lib -L/usr/local/sage-7/local/lib -Wl,-rpath,/usr/local/sage-7/local/lib -o nnet.so nnet.o -L/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/lib -lR
2318make[6]: Leaving directory '/tmp/RtmpRAPFvM/R.INSTALL6fd15c33034c/nnet/src'
2319installing to /usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/library/nnet/libs
2320** R
2321** inst
2322** byte-compile and prepare package for lazy loading
2323** help
2324*** installing help indices
2325** building package indices
2326** testing if installed package can be loaded
2327* DONE (nnet)
2328begin installing recommended package spatial
2329* installing *source* package 'KernSmooth' ...
2330** package 'KernSmooth' successfully unpacked and MD5 sums checked
2331** libs
2332make[6]: Entering directory '/tmp/RtmpQHwcyM/R.INSTALL6fc631c713b2/KernSmooth/src'
2333gfortran   -fpic  -g -O2  -c blkest.f -o blkest.o
2334gfortran   -fpic  -g -O2  -c cp.f -o cp.o
2335gfortran   -fpic  -g -O2  -c dgedi.f -o dgedi.o
2336gfortran   -fpic  -g -O2  -c dgefa.f -o dgefa.o
2337gfortran   -fpic  -g -O2  -c dgesl.f -o dgesl.o
2338gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG      -fpic  -g -O2   -c init.c -o init.o
2339gfortran   -fpic  -g -O2  -c linbin.f -o linbin.o
2340gfortran   -fpic  -g -O2  -c linbin2D.f -o linbin2D.o
2341gfortran   -fpic  -g -O2  -c locpoly.f -o locpoly.o
2342gfortran   -fpic  -g -O2  -c rlbin.f -o rlbin.o
2343gfortran   -fpic  -g -O2  -c sdiag.f -o sdiag.o
2344gfortran   -fpic  -g -O2  -c sstdiag.f -o sstdiag.o
2345gcc -shared -L/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/lib -L/usr/local/sage-7/local/lib -Wl,-rpath,/usr/local/sage-7/local/lib -o KernSmooth.so blkest.o cp.o dgedi.o dgefa.o dgesl.o init.o linbin.o linbin2D.o locpoly.o rlbin.o sdiag.o sstdiag.o -L/usr/local/sage-7/local/lib -lf77blas -latlas -lgfortran -lm -lquadmath -lgfortran -lm -lquadmath -L/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/lib -lR
2346make[6]: Leaving directory '/tmp/RtmpQHwcyM/R.INSTALL6fc631c713b2/KernSmooth/src'
2347installing to /usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/library/KernSmooth/libs
2348** R
2349** inst
2350** byte-compile and prepare package for lazy loading
2351** help
2352*** installing help indices
2353** building package indices
2354** testing if installed package can be loaded
2355* DONE (KernSmooth)
2356* installing *source* package 'spatial' ...
2357** package 'spatial' successfully unpacked and MD5 sums checked
2358** libs
2359make[6]: Entering directory '/tmp/Rtmpz4kasi/R.INSTALL70aff3fd205/spatial/src'
2360gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG      -fpic  -g -O2   -c init.c -o init.o
2361gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG      -fpic  -g -O2   -c krc.c -o krc.o
2362gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG      -fpic  -g -O2   -c pps.c -o pps.o
2363gcc -shared -L/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/lib -L/usr/local/sage-7/local/lib -Wl,-rpath,/usr/local/sage-7/local/lib -o spatial.so init.o krc.o pps.o -L/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/lib -lR
2364make[6]: Leaving directory '/tmp/Rtmpz4kasi/R.INSTALL70aff3fd205/spatial/src'
2365installing to /usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/library/spatial/libs
2366** R
2367** inst
2368** byte-compile and prepare package for lazy loading
2369** help
2370*** installing help indices
2371** building package indices
2372** testing if installed package can be loaded
2373* DONE (spatial)
2374* installing *source* package 'foreign' ...
2375** package 'foreign' successfully unpacked and MD5 sums checked
2376** libs
2377make[6]: Entering directory '/tmp/RtmpgdhrJM/R.INSTALL6fd21ce00e67/foreign/src'
2378gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG      -fpic  -g -O2   -c R_systat.c -o R_systat.o
2379gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG      -fpic  -g -O2   -c Rdbfread.c -o Rdbfread.o
2380gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG      -fpic  -g -O2   -c Rdbfwrite.c -o Rdbfwrite.o
2381gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG      -fpic  -g -O2   -c SASxport.c -o SASxport.o
2382gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG      -fpic  -g -O2   -c avl.c -o avl.o
2383gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG      -fpic  -g -O2   -c dbfopen.c -o dbfopen.o
2384gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG      -fpic  -g -O2   -c file-handle.c -o file-handle.o
2385gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG      -fpic  -g -O2   -c format.c -o format.o
2386gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG      -fpic  -g -O2   -c init.c -o init.o
2387gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG      -fpic  -g -O2   -c minitab.c -o minitab.o
2388gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG      -fpic  -g -O2   -c pfm-read.c -o pfm-read.o
2389gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG      -fpic  -g -O2   -c sfm-read.c -o sfm-read.o
2390gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG      -fpic  -g -O2   -c spss.c -o spss.o
2391gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG      -fpic  -g -O2   -c stataread.c -o stataread.o
2392gcc -shared -L/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/lib -L/usr/local/sage-7/local/lib -Wl,-rpath,/usr/local/sage-7/local/lib -o foreign.so R_systat.o Rdbfread.o Rdbfwrite.o SASxport.o avl.o dbfopen.o file-handle.o format.o init.o minitab.o pfm-read.o sfm-read.o spss.o stataread.o -L/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/lib -lR
2393make[6]: Leaving directory '/tmp/RtmpgdhrJM/R.INSTALL6fd21ce00e67/foreign/src'
2394installing to /usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/library/foreign/libs
2395** R
2396** inst
2397** byte-compile and prepare package for lazy loading
2398** help
2399*** installing help indices
2400** building package indices
2401** testing if installed package can be loaded
2402* DONE (foreign)
2403* installing *source* package 'rpart' ...
2404** package 'rpart' successfully unpacked and MD5 sums checked
2405** libs
2406make[6]: Entering directory '/tmp/RtmpOclhJM/R.INSTALL6fcd6a9c53a4/rpart/src'
2407gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG      -fpic  -g -O2   -c anova.c -o anova.o
2408gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG      -fpic  -g -O2   -c anovapred.c -o anovapred.o
2409gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG      -fpic  -g -O2   -c branch.c -o branch.o
2410gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG      -fpic  -g -O2   -c bsplit.c -o bsplit.o
2411gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG      -fpic  -g -O2   -c choose_surg.c -o choose_surg.o
2412gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG      -fpic  -g -O2   -c fix_cp.c -o fix_cp.o
2413gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG      -fpic  -g -O2   -c free_tree.c -o free_tree.o
2414gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG      -fpic  -g -O2   -c gini.c -o gini.o
2415gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG      -fpic  -g -O2   -c graycode.c -o graycode.o
2416gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG      -fpic  -g -O2   -c init.c -o init.o
2417gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG      -fpic  -g -O2   -c insert_split.c -o insert_split.o
2418gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG      -fpic  -g -O2   -c make_cp_list.c -o make_cp_list.o
2419gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG      -fpic  -g -O2   -c make_cp_table.c -o make_cp_table.o
2420gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG      -fpic  -g -O2   -c mysort.c -o mysort.o
2421gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG      -fpic  -g -O2   -c nodesplit.c -o nodesplit.o
2422gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG      -fpic  -g -O2   -c partition.c -o partition.o
2423gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG      -fpic  -g -O2   -c poisson.c -o poisson.o
2424gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG      -fpic  -g -O2   -c pred_rpart.c -o pred_rpart.o
2425gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG      -fpic  -g -O2   -c print_tree.c -o print_tree.o
2426gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG      -fpic  -g -O2   -c rpart.c -o rpart.o
2427gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG      -fpic  -g -O2   -c rpart_callback.c -o rpart_callback.o
2428gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG      -fpic  -g -O2   -c rpartexp.c -o rpartexp.o
2429gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG      -fpic  -g -O2   -c rpartexp2.c -o rpartexp2.o
2430gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG      -fpic  -g -O2   -c rpcountup.c -o rpcountup.o
2431gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG      -fpic  -g -O2   -c rpmatrix.c -o rpmatrix.o
2432gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG      -fpic  -g -O2   -c rundown.c -o rundown.o
2433gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG      -fpic  -g -O2   -c rundown2.c -o rundown2.o
2434gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG      -fpic  -g -O2   -c surrogate.c -o surrogate.o
2435gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG      -fpic  -g -O2   -c usersplit.c -o usersplit.o
2436gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG      -fpic  -g -O2   -c xpred.c -o xpred.o
2437gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG      -fpic  -g -O2   -c xval.c -o xval.o
2438gcc -shared -L/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/lib -L/usr/local/sage-7/local/lib -Wl,-rpath,/usr/local/sage-7/local/lib -o rpart.so anova.o anovapred.o branch.o bsplit.o choose_surg.o fix_cp.o free_tree.o gini.o graycode.o init.o insert_split.o make_cp_list.o make_cp_table.o mysort.o nodesplit.o partition.o poisson.o pred_rpart.o print_tree.o rpart.o rpart_callback.o rpartexp.o rpartexp2.o rpcountup.o rpmatrix.o rundown.o rundown2.o surrogate.o usersplit.o xpred.o xval.o -L/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/lib -lR
2439make[6]: Leaving directory '/tmp/RtmpOclhJM/R.INSTALL6fcd6a9c53a4/rpart/src'
2440installing to /usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/library/rpart/libs
2441** R
2442** data
2443*** moving datasets to lazyload DB
2444** inst
2445** byte-compile and prepare package for lazy loading
2446** help
2447*** installing help indices
2448** building package indices
2449** installing vignettes
2450** testing if installed package can be loaded
2451* DONE (rpart)
2452* installing *source* package 'MASS' ...
2453** package 'MASS' successfully unpacked and MD5 sums checked
2454** libs
2455make[6]: Entering directory '/tmp/RtmpUbFOnM/R.INSTALL6fca3399c135/MASS/src'
2456gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG      -fpic  -g -O2   -c MASS.c -o MASS.o
2457gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG      -fpic  -g -O2   -c lqs.c -o lqs.o
2458gcc -shared -L/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/lib -L/usr/local/sage-7/local/lib -Wl,-rpath,/usr/local/sage-7/local/lib -o MASS.so MASS.o lqs.o -L/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/lib -lR
2459make[6]: Leaving directory '/tmp/RtmpUbFOnM/R.INSTALL6fca3399c135/MASS/src'
2460installing to /usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/library/MASS/libs
2461** R
2462** data
2463*** moving datasets to lazyload DB
2464** inst
2465** byte-compile and prepare package for lazy loading
2466** help
2467*** installing help indices
2468** building package indices
2469** testing if installed package can be loaded
2470* DONE (MASS)
2471begin installing recommended package cluster
2472begin installing recommended package class
2473* installing *source* package 'lattice' ...
2474** package 'lattice' successfully unpacked and MD5 sums checked
2475** libs
2476make[6]: Entering directory '/tmp/Rtmp5coTMM/R.INSTALL6fc4351d2154/lattice/src'
2477gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG      -fpic  -g -O2   -c init.c -o init.o
2478gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG      -fpic  -g -O2   -c threeDplot.c -o threeDplot.o
2479gcc -shared -L/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/lib -L/usr/local/sage-7/local/lib -Wl,-rpath,/usr/local/sage-7/local/lib -o lattice.so init.o threeDplot.o -L/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/lib -lR
2480make[6]: Leaving directory '/tmp/Rtmp5coTMM/R.INSTALL6fc4351d2154/lattice/src'
2481installing to /usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/library/lattice/libs
2482** R
2483** data
2484*** moving datasets to lazyload DB
2485** demo
2486** inst
2487** byte-compile and prepare package for lazy loading
2488** help
2489*** installing help indices
2490** building package indices
2491** testing if installed package can be loaded
2492* DONE (lattice)
2493begin installing recommended package Matrix
2494begin installing recommended package nlme
2495* installing *source* package 'class' ...
2496** package 'class' successfully unpacked and MD5 sums checked
2497** libs
2498make[6]: Entering directory '/tmp/RtmpcEUgex/R.INSTALL71b015c9ae21/class/src'
2499gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG      -fpic  -g -O2   -c class.c -o class.o
2500gcc -shared -L/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/lib -L/usr/local/sage-7/local/lib -Wl,-rpath,/usr/local/sage-7/local/lib -o class.so class.o -L/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/lib -lR
2501make[6]: Leaving directory '/tmp/RtmpcEUgex/R.INSTALL71b015c9ae21/class/src'
2502installing to /usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/library/class/libs
2503** R
2504** inst
2505** byte-compile and prepare package for lazy loading
2506** help
2507*** installing help indices
2508** building package indices
2509** testing if installed package can be loaded
2510* DONE (class)
2511* installing *source* package 'cluster' ...
2512** package 'cluster' successfully unpacked and MD5 sums checked
2513** libs
2514make[6]: Entering directory '/tmp/RtmptKLVfx/R.INSTALL71ae271bad28/cluster/src'
2515gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG      -fpic  -g -O2   -c clara.c -o clara.o
2516gfortran   -fpic  -g -O2  -c daisy.f -o daisy.o
2517gfortran   -fpic  -g -O2  -c dysta.f -o dysta.o
2518gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG      -fpic  -g -O2   -c fanny.c -o fanny.o
2519gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG      -fpic  -g -O2   -c init.c -o init.o
2520gfortran   -fpic  -g -O2  -c mona.f -o mona.o
2521gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG      -fpic  -g -O2   -c pam.c -o pam.o
2522gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG      -fpic  -g -O2   -c sildist.c -o sildist.o
2523gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG      -fpic  -g -O2   -c spannel.c -o spannel.o
2524gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG      -fpic  -g -O2   -c twins.c -o twins.o
2525gcc -shared -L/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/lib -L/usr/local/sage-7/local/lib -Wl,-rpath,/usr/local/sage-7/local/lib -o cluster.so clara.o daisy.o dysta.o fanny.o init.o mona.o pam.o sildist.o spannel.o twins.o -lgfortran -lm -lquadmath -L/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/lib -lR
2526make[6]: Leaving directory '/tmp/RtmptKLVfx/R.INSTALL71ae271bad28/cluster/src'
2527installing to /usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/library/cluster/libs
2528** R
2529** data
2530*** moving datasets to lazyload DB
2531** inst
2532** byte-compile and prepare package for lazy loading
2533** help
2534*** installing help indices
2535** building package indices
2536** testing if installed package can be loaded
2537* DONE (cluster)
2538* installing *source* package 'survival' ...
2539** package 'survival' successfully unpacked and MD5 sums checked
2540** libs
2541make[6]: Entering directory '/tmp/Rtmpl2khJM/R.INSTALL6fce6b62106c/survival/src'
2542gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG      -fpic  -g -O2   -c agexact.c -o agexact.o
2543gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG      -fpic  -g -O2   -c agfit4.c -o agfit4.o
2544gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG      -fpic  -g -O2   -c agfit5.c -o agfit5.o
2545gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG      -fpic  -g -O2   -c agmart.c -o agmart.o
2546gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG      -fpic  -g -O2   -c agmart2.c -o agmart2.o
2547gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG      -fpic  -g -O2   -c agmart3.c -o agmart3.o
2548gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG      -fpic  -g -O2   -c agscore.c -o agscore.o
2549gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG      -fpic  -g -O2   -c agsurv3.c -o agsurv3.o
2550gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG      -fpic  -g -O2   -c agsurv4.c -o agsurv4.o
2551gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG      -fpic  -g -O2   -c agsurv5.c -o agsurv5.o
2552gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG      -fpic  -g -O2   -c chinv2.c -o chinv2.o
2553gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG      -fpic  -g -O2   -c chinv3.c -o chinv3.o
2554gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG      -fpic  -g -O2   -c cholesky2.c -o cholesky2.o
2555gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG      -fpic  -g -O2   -c cholesky3.c -o cholesky3.o
2556gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG      -fpic  -g -O2   -c chsolve2.c -o chsolve2.o
2557gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG      -fpic  -g -O2   -c chsolve3.c -o chsolve3.o
2558gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG      -fpic  -g -O2   -c concordance1.c -o concordance1.o
2559gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG      -fpic  -g -O2   -c cox_Rcallback.c -o cox_Rcallback.o
2560gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG      -fpic  -g -O2   -c coxcount1.c -o coxcount1.o
2561gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG      -fpic  -g -O2   -c coxdetail.c -o coxdetail.o
2562gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG      -fpic  -g -O2   -c coxexact.c -o coxexact.o
2563gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG      -fpic  -g -O2   -c coxfit5.c -o coxfit5.o
2564gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG      -fpic  -g -O2   -c coxfit6.c -o coxfit6.o
2565gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG      -fpic  -g -O2   -c coxmart.c -o coxmart.o
2566gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG      -fpic  -g -O2   -c coxmart2.c -o coxmart2.o
2567gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG      -fpic  -g -O2   -c coxph_wtest.c -o coxph_wtest.o
2568gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG      -fpic  -g -O2   -c coxsafe.c -o coxsafe.o
2569gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG      -fpic  -g -O2   -c coxscho.c -o coxscho.o
2570gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG      -fpic  -g -O2   -c coxscore.c -o coxscore.o
2571gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG      -fpic  -g -O2   -c dmatrix.c -o dmatrix.o
2572gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG      -fpic  -g -O2   -c doloop.c -o doloop.o
2573gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG      -fpic  -g -O2   -c init.c -o init.o
2574gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG      -fpic  -g -O2   -c pyears1.c -o pyears1.o
2575gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG      -fpic  -g -O2   -c pyears2.c -o pyears2.o
2576gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG      -fpic  -g -O2   -c pyears3b.c -o pyears3b.o
2577gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG      -fpic  -g -O2   -c pystep.c -o pystep.o
2578gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG      -fpic  -g -O2   -c survConcordance.c -o survConcordance.o
2579gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG      -fpic  -g -O2   -c survdiff2.c -o survdiff2.o
2580gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG      -fpic  -g -O2   -c survfit4.c -o survfit4.o
2581gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG      -fpic  -g -O2   -c survfitci.c -o survfitci.o
2582gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG      -fpic  -g -O2   -c survpenal.c -o survpenal.o
2583gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG      -fpic  -g -O2   -c survreg6.c -o survreg6.o
2584gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG      -fpic  -g -O2   -c survreg7.c -o survreg7.o
2585gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG      -fpic  -g -O2   -c survregc1.c -o survregc1.o
2586gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG      -fpic  -g -O2   -c survregc2.c -o survregc2.o
2587gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG      -fpic  -g -O2   -c tmerge.c -o tmerge.o
2588gcc -shared -L/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/lib -L/usr/local/sage-7/local/lib -Wl,-rpath,/usr/local/sage-7/local/lib -o survival.so agexact.o agfit4.o agfit5.o agmart.o agmart2.o agmart3.o agscore.o agsurv3.o agsurv4.o agsurv5.o chinv2.o chinv3.o cholesky2.o cholesky3.o chsolve2.o chsolve3.o concordance1.o cox_Rcallback.o coxcount1.o coxdetail.o coxexact.o coxfit5.o coxfit6.o coxmart.o coxmart2.o coxph_wtest.o coxsafe.o coxscho.o coxscore.o dmatrix.o doloop.o init.o pyears1.o pyears2.o pyears3b.o pystep.o survConcordance.o survdiff2.o survfit4.o survfitci.o survpenal.o survreg6.o survreg7.o survregc1.o survregc2.o tmerge.o -L/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/lib -lR
2589make[6]: Leaving directory '/tmp/Rtmpl2khJM/R.INSTALL6fce6b62106c/survival/src'
2590installing to /usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/library/survival/libs
2591** R
2592** data
2593*** moving datasets to lazyload DB
2594** inst
2595** byte-compile and prepare package for lazy loading
2596** help
2597*** installing help indices
2598** building package indices
2599** installing vignettes
2600** testing if installed package can be loaded
2601* DONE (survival)
2602begin installing recommended package boot
2603* installing *source* package 'boot' ...
2604** package 'boot' successfully unpacked and MD5 sums checked
2605** R
2606** data
2607*** moving datasets to lazyload DB
2608** inst
2609** byte-compile and prepare package for lazy loading
2610** help
2611*** installing help indices
2612** building package indices
2613** testing if installed package can be loaded
2614* DONE (boot)
2615* installing *source* package 'nlme' ...
2616** package 'nlme' successfully unpacked and MD5 sums checked
2617** libs
2618make[6]: Entering directory '/tmp/RtmpADlxGD/R.INSTALL71f7330e1954/nlme/src'
2619gfortran   -fpic  -g -O2  -c chol.f -o chol.o
2620gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG     -fvisibility=hidden -fpic  -g -O2   -c corStruct.c -o corStruct.o
2621gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG     -fvisibility=hidden -fpic  -g -O2   -c gnls.c -o gnls.o
2622gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG     -fvisibility=hidden -fpic  -g -O2   -c init.c -o init.o
2623gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG     -fvisibility=hidden -fpic  -g -O2   -c matrix.c -o matrix.o
2624gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG     -fvisibility=hidden -fpic  -g -O2   -c nlOptimizer.c -o nlOptimizer.o
2625gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG     -fvisibility=hidden -fpic  -g -O2   -c nlme.c -o nlme.o
2626gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG     -fvisibility=hidden -fpic  -g -O2   -c nlmefit.c -o nlmefit.o
2627gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG     -fvisibility=hidden -fpic  -g -O2   -c pdMat.c -o pdMat.o
2628gfortran   -fpic  -g -O2  -c rs.f -o rs.o
2629gcc -shared -L/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/lib -L/usr/local/sage-7/local/lib -Wl,-rpath,/usr/local/sage-7/local/lib -o nlme.so chol.o corStruct.o gnls.o init.o matrix.o nlOptimizer.o nlme.o nlmefit.o pdMat.o rs.o -lgfortran -lm -lquadmath -L/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/lib -lR
2630make[6]: Leaving directory '/tmp/RtmpADlxGD/R.INSTALL71f7330e1954/nlme/src'
2631installing to /usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/library/nlme/libs
2632** R
2633** data
2634*** moving datasets to lazyload DB
2635** inst
2636** byte-compile and prepare package for lazy loading
2637** help
2638*** installing help indices
2639** building package indices
2640** testing if installed package can be loaded
2641* DONE (nlme)
2642* installing *source* package 'Matrix' ...
2643** package 'Matrix' successfully unpacked and MD5 sums checked
2644** libs
2645make[6]: Entering directory '/tmp/Rtmp04a3UD/R.INSTALL71f9552cf55c/Matrix/src'
2646gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG -DNTIMER -I./SuiteSparse_config     -fpic  -g -O2   -c CHMfactor.c -o CHMfactor.o
2647gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG -DNTIMER -I./SuiteSparse_config     -fpic  -g -O2   -c Csparse.c -o Csparse.o
2648gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG -DNTIMER -I./SuiteSparse_config     -fpic  -g -O2   -c TMatrix_as.c -o TMatrix_as.o
2649gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG -DNTIMER -I./SuiteSparse_config     -fpic  -g -O2   -c Tsparse.c -o Tsparse.o
2650gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG -DNTIMER -I./SuiteSparse_config     -fpic  -g -O2   -c init.c -o init.o
2651gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG -DNTIMER -I./SuiteSparse_config     -fpic  -g -O2   -c Mutils.c -o Mutils.o
2652gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG -DNTIMER -I./SuiteSparse_config     -fpic  -g -O2   -c chm_common.c -o chm_common.o
2653gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG -DNTIMER -I./SuiteSparse_config     -fpic  -g -O2   -c cs.c -o cs.o
2654gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG -DNTIMER -I./SuiteSparse_config     -fpic  -g -O2   -c cs_utils.c -o cs_utils.o
2655gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG -DNTIMER -I./SuiteSparse_config     -fpic  -g -O2   -c dense.c -o dense.o
2656gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG -DNTIMER -I./SuiteSparse_config     -fpic  -g -O2   -c dgCMatrix.c -o dgCMatrix.o
2657gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG -DNTIMER -I./SuiteSparse_config     -fpic  -g -O2   -c dgTMatrix.c -o dgTMatrix.o
2658gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG -DNTIMER -I./SuiteSparse_config     -fpic  -g -O2   -c dgeMatrix.c -o dgeMatrix.o
2659gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG -DNTIMER -I./SuiteSparse_config     -fpic  -g -O2   -c dpoMatrix.c -o dpoMatrix.o
2660gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG -DNTIMER -I./SuiteSparse_config     -fpic  -g -O2   -c dppMatrix.c -o dppMatrix.o
2661gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG -DNTIMER -I./SuiteSparse_config     -fpic  -g -O2   -c dsCMatrix.c -o dsCMatrix.o
2662gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG -DNTIMER -I./SuiteSparse_config     -fpic  -g -O2   -c dsyMatrix.c -o dsyMatrix.o
2663gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG -DNTIMER -I./SuiteSparse_config     -fpic  -g -O2   -c dspMatrix.c -o dspMatrix.o
2664gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG -DNTIMER -I./SuiteSparse_config     -fpic  -g -O2   -c dtCMatrix.c -o dtCMatrix.o
2665gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG -DNTIMER -I./SuiteSparse_config     -fpic  -g -O2   -c dtTMatrix.c -o dtTMatrix.o
2666gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG -DNTIMER -I./SuiteSparse_config     -fpic  -g -O2   -c dtrMatrix.c -o dtrMatrix.o
2667gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG -DNTIMER -I./SuiteSparse_config     -fpic  -g -O2   -c dtpMatrix.c -o dtpMatrix.o
2668gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG -DNTIMER -I./SuiteSparse_config     -fpic  -g -O2   -c factorizations.c -o factorizations.o
2669gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG -DNTIMER -I./SuiteSparse_config     -fpic  -g -O2   -c ldense.c -o ldense.o
2670gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG -DNTIMER -I./SuiteSparse_config     -fpic  -g -O2   -c lgCMatrix.c -o lgCMatrix.o
2671gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG -DNTIMER -I./SuiteSparse_config     -fpic  -g -O2   -c sparseQR.c -o sparseQR.o
2672gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG -DNTIMER -I./SuiteSparse_config     -fpic  -g -O2   -c abIndex.c -o abIndex.o
2673make[7]: Entering directory '/tmp/Rtmp04a3UD/R.INSTALL71f9552cf55c/Matrix/src/CHOLMOD'
2674( cd Lib ; make clean )
2675make[8]: Entering directory '/tmp/Rtmp04a3UD/R.INSTALL71f9552cf55c/Matrix/src/CHOLMOD/Lib'
2676make[8]: Leaving directory '/tmp/Rtmp04a3UD/R.INSTALL71f9552cf55c/Matrix/src/CHOLMOD/Lib'
2677make[7]: Leaving directory '/tmp/Rtmp04a3UD/R.INSTALL71f9552cf55c/Matrix/src/CHOLMOD'
2678make[7]: Entering directory '/tmp/Rtmp04a3UD/R.INSTALL71f9552cf55c/Matrix/src/COLAMD'
2679( cd Source ; make clean )
2680make[8]: Entering directory '/tmp/Rtmp04a3UD/R.INSTALL71f9552cf55c/Matrix/src/COLAMD/Source'
2681make[8]: Leaving directory '/tmp/Rtmp04a3UD/R.INSTALL71f9552cf55c/Matrix/src/COLAMD/Source'
2682make[7]: Leaving directory '/tmp/Rtmp04a3UD/R.INSTALL71f9552cf55c/Matrix/src/COLAMD'
2683make[7]: Entering directory '/tmp/Rtmp04a3UD/R.INSTALL71f9552cf55c/Matrix/src/AMD'
2684( cd Source ; make clean )
2685make[8]: Entering directory '/tmp/Rtmp04a3UD/R.INSTALL71f9552cf55c/Matrix/src/AMD/Source'
2686make[8]: Leaving directory '/tmp/Rtmp04a3UD/R.INSTALL71f9552cf55c/Matrix/src/AMD/Source'
2687make[7]: Leaving directory '/tmp/Rtmp04a3UD/R.INSTALL71f9552cf55c/Matrix/src/AMD'
2688make[7]: Entering directory '/tmp/Rtmp04a3UD/R.INSTALL71f9552cf55c/Matrix/src/SuiteSparse_config'
2689make[7]: Leaving directory '/tmp/Rtmp04a3UD/R.INSTALL71f9552cf55c/Matrix/src/SuiteSparse_config'
2690make[7]: Entering directory '/tmp/Rtmp04a3UD/R.INSTALL71f9552cf55c/Matrix/src/CHOLMOD'
2691( cd Lib ; make )
2692make[8]: Entering directory '/tmp/Rtmp04a3UD/R.INSTALL71f9552cf55c/Matrix/src/CHOLMOD/Lib'
2693gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT     -fpic  -g -O2   -c ../Core/cholmod_aat.c -o cholmod_aat.o
2694gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT     -fpic  -g -O2   -c ../Core/cholmod_add.c -o cholmod_add.o
2695gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT     -fpic  -g -O2   -c ../Core/cholmod_band.c -o cholmod_band.o
2696gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT     -fpic  -g -O2   -c ../Core/cholmod_change_factor.c -o cholmod_change_factor.o
2697gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT     -fpic  -g -O2   -c ../Core/cholmod_common.c -o cholmod_common.o
2698gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT     -fpic  -g -O2   -c ../Core/cholmod_complex.c -o cholmod_complex.o
2699gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT     -fpic  -g -O2   -c ../Core/cholmod_copy.c -o cholmod_copy.o
2700gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT     -fpic  -g -O2   -c ../Core/cholmod_dense.c -o cholmod_dense.o
2701gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT     -fpic  -g -O2   -c ../Core/cholmod_error.c -o cholmod_error.o
2702gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT     -fpic  -g -O2   -c ../Core/cholmod_factor.c -o cholmod_factor.o
2703gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT     -fpic  -g -O2   -c ../Core/cholmod_memory.c -o cholmod_memory.o
2704gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT     -fpic  -g -O2   -c ../Core/cholmod_sparse.c -o cholmod_sparse.o
2705gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT     -fpic  -g -O2   -c ../Core/cholmod_transpose.c -o cholmod_transpose.o
2706gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT     -fpic  -g -O2   -c ../Core/cholmod_triplet.c -o cholmod_triplet.o
2707gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT     -fpic  -g -O2   -c ../Core/cholmod_version.c -o cholmod_version.o
2708gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT     -fpic  -g -O2   -c ../Check/cholmod_check.c -o cholmod_check.o
2709gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT     -fpic  -g -O2   -c ../Check/cholmod_read.c -o cholmod_read.o
2710gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT     -fpic  -g -O2   -c ../Check/cholmod_write.c -o cholmod_write.o
2711gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT     -fpic  -g -O2   -c ../Cholesky/cholmod_amd.c -o cholmod_amd.o
2712gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT     -fpic  -g -O2   -c ../Cholesky/cholmod_analyze.c -o cholmod_analyze.o
2713gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT     -fpic  -g -O2   -c ../Cholesky/cholmod_colamd.c -o cholmod_colamd.o
2714gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT     -fpic  -g -O2   -c ../Cholesky/cholmod_etree.c -o cholmod_etree.o
2715gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT     -fpic  -g -O2   -c ../Cholesky/cholmod_factorize.c -o cholmod_factorize.o
2716gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT     -fpic  -g -O2   -c ../Cholesky/cholmod_postorder.c -o cholmod_postorder.o
2717gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT     -fpic  -g -O2   -c ../Cholesky/cholmod_rcond.c -o cholmod_rcond.o
2718gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT     -fpic  -g -O2   -c ../Cholesky/cholmod_resymbol.c -o cholmod_resymbol.o
2719gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT     -fpic  -g -O2   -c ../Cholesky/cholmod_rowcolcounts.c -o cholmod_rowcolcounts.o
2720gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT     -fpic  -g -O2   -c ../Cholesky/cholmod_rowfac.c -o cholmod_rowfac.o
2721gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT     -fpic  -g -O2   -c ../Cholesky/cholmod_solve.c -o cholmod_solve.o
2722gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT     -fpic  -g -O2   -c ../Cholesky/cholmod_spsolve.c -o cholmod_spsolve.o
2723gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT     -fpic  -g -O2   -c ../MatrixOps/cholmod_drop.c -o cholmod_drop.o
2724gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT     -fpic  -g -O2   -c ../MatrixOps/cholmod_horzcat.c -o cholmod_horzcat.o
2725gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT     -fpic  -g -O2   -c ../MatrixOps/cholmod_norm.c -o cholmod_norm.o
2726gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT     -fpic  -g -O2   -c ../MatrixOps/cholmod_scale.c -o cholmod_scale.o
2727gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT     -fpic  -g -O2   -c ../MatrixOps/cholmod_sdmult.c -o cholmod_sdmult.o
2728gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT     -fpic  -g -O2   -c ../MatrixOps/cholmod_ssmult.c -o cholmod_ssmult.o
2729gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT     -fpic  -g -O2   -c ../MatrixOps/cholmod_submatrix.c -o cholmod_submatrix.o
2730gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT     -fpic  -g -O2   -c ../MatrixOps/cholmod_vertcat.c -o cholmod_vertcat.o
2731gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT     -fpic  -g -O2   -c ../MatrixOps/cholmod_symmetry.c -o cholmod_symmetry.o
2732gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT     -fpic  -g -O2   -c ../Modify/cholmod_rowadd.c -o cholmod_rowadd.o
2733gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT     -fpic  -g -O2   -c ../Modify/cholmod_rowdel.c -o cholmod_rowdel.o
2734gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT     -fpic  -g -O2   -c ../Modify/cholmod_updown.c -o cholmod_updown.o
2735gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT     -fpic  -g -O2   -c ../Supernodal/cholmod_super_numeric.c -o cholmod_super_numeric.o
2736gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT     -fpic  -g -O2   -c ../Supernodal/cholmod_super_solve.c -o cholmod_super_solve.o
2737gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT     -fpic  -g -O2   -c ../Supernodal/cholmod_super_symbolic.c -o cholmod_super_symbolic.o
2738gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT     -fpic  -g -O2   -DDLONG -c  ../Core/cholmod_aat.c -o cholmod_l_aat.o
2739gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT     -fpic  -g -O2   -DDLONG -c  ../Core/cholmod_add.c -o cholmod_l_add.o
2740gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT     -fpic  -g -O2   -DDLONG -c  ../Core/cholmod_band.c -o cholmod_l_band.o
2741gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT     -fpic  -g -O2   -DDLONG -c  ../Core/cholmod_change_factor.c -o cholmod_l_change_factor.o
2742gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT     -fpic  -g -O2   -DDLONG -c  ../Core/cholmod_common.c -o cholmod_l_common.o
2743gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT     -fpic  -g -O2   -DDLONG -c  ../Core/cholmod_complex.c -o cholmod_l_complex.o
2744gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT     -fpic  -g -O2   -DDLONG -c  ../Core/cholmod_copy.c -o cholmod_l_copy.o
2745gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT     -fpic  -g -O2   -DDLONG -c  ../Core/cholmod_dense.c -o cholmod_l_dense.o
2746gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT     -fpic  -g -O2   -DDLONG -c  ../Core/cholmod_error.c -o cholmod_l_error.o
2747gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT     -fpic  -g -O2   -DDLONG -c  ../Core/cholmod_factor.c -o cholmod_l_factor.o
2748gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT     -fpic  -g -O2   -DDLONG -c  ../Core/cholmod_memory.c -o cholmod_l_memory.o
2749gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT     -fpic  -g -O2   -DDLONG -c  ../Core/cholmod_sparse.c -o cholmod_l_sparse.o
2750gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT     -fpic  -g -O2   -DDLONG -c  ../Core/cholmod_transpose.c -o cholmod_l_transpose.o
2751gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT     -fpic  -g -O2   -DDLONG -c  ../Core/cholmod_triplet.c -o cholmod_l_triplet.o
2752gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT     -fpic  -g -O2   -DDLONG -c  ../Core/cholmod_version.c -o cholmod_l_version.o
2753gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT     -fpic  -g -O2   -DDLONG -c  ../Check/cholmod_check.c -o cholmod_l_check.o
2754gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT     -fpic  -g -O2   -DDLONG -c  ../Check/cholmod_read.c -o cholmod_l_read.o
2755gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT     -fpic  -g -O2   -DDLONG -c  ../Check/cholmod_write.c -o cholmod_l_write.o
2756gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT     -fpic  -g -O2   -DDLONG -c  ../Cholesky/cholmod_amd.c -o cholmod_l_amd.o
2757gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT     -fpic  -g -O2   -DDLONG -c  ../Cholesky/cholmod_analyze.c -o cholmod_l_analyze.o
2758gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT     -fpic  -g -O2   -DDLONG -c  ../Cholesky/cholmod_colamd.c -o cholmod_l_colamd.o
2759gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT     -fpic  -g -O2   -DDLONG -c  ../Cholesky/cholmod_etree.c -o cholmod_l_etree.o
2760gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT     -fpic  -g -O2   -DDLONG -c  ../Cholesky/cholmod_factorize.c -o cholmod_l_factorize.o
2761gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT     -fpic  -g -O2   -DDLONG -c  ../Cholesky/cholmod_postorder.c -o cholmod_l_postorder.o
2762gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT     -fpic  -g -O2   -DDLONG -c  ../Cholesky/cholmod_rcond.c -o cholmod_l_rcond.o
2763gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT     -fpic  -g -O2   -DDLONG -c  ../Cholesky/cholmod_resymbol.c -o cholmod_l_resymbol.o
2764gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT     -fpic  -g -O2   -DDLONG -c  ../Cholesky/cholmod_rowcolcounts.c -o cholmod_l_rowcolcounts.o
2765gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT     -fpic  -g -O2   -DDLONG -c  ../Cholesky/cholmod_rowfac.c -o cholmod_l_rowfac.o
2766gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT     -fpic  -g -O2   -DDLONG -c  ../Cholesky/cholmod_solve.c -o cholmod_l_solve.o
2767gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT     -fpic  -g -O2   -DDLONG -c  ../Cholesky/cholmod_spsolve.c -o cholmod_l_spsolve.o
2768gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT     -fpic  -g -O2   -DDLONG -c  ../MatrixOps/cholmod_drop.c -o cholmod_l_drop.o
2769gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT     -fpic  -g -O2   -DDLONG -c  ../MatrixOps/cholmod_horzcat.c -o cholmod_l_horzcat.o
2770gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT     -fpic  -g -O2   -DDLONG -c  ../MatrixOps/cholmod_norm.c -o cholmod_l_norm.o
2771gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT     -fpic  -g -O2   -DDLONG -c  ../MatrixOps/cholmod_scale.c -o cholmod_l_scale.o
2772gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT     -fpic  -g -O2   -DDLONG -c  ../MatrixOps/cholmod_sdmult.c -o cholmod_l_sdmult.o
2773gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT     -fpic  -g -O2   -DDLONG -c  ../MatrixOps/cholmod_ssmult.c -o cholmod_l_ssmult.o
2774gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT     -fpic  -g -O2   -DDLONG -c  ../MatrixOps/cholmod_submatrix.c -o cholmod_l_submatrix.o
2775gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT     -fpic  -g -O2   -DDLONG -c  ../MatrixOps/cholmod_vertcat.c -o cholmod_l_vertcat.o
2776gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT     -fpic  -g -O2   -DDLONG -c  ../MatrixOps/cholmod_symmetry.c -o cholmod_l_symmetry.o
2777gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT     -fpic  -g -O2   -DDLONG -c  ../Modify/cholmod_rowadd.c -o cholmod_l_rowadd.o
2778gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT     -fpic  -g -O2   -DDLONG -c  ../Modify/cholmod_rowdel.c -o cholmod_l_rowdel.o
2779gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT     -fpic  -g -O2   -DDLONG -c  ../Modify/cholmod_updown.c -o cholmod_l_updown.o
2780gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT     -fpic  -g -O2   -DDLONG -c  ../Supernodal/cholmod_super_numeric.c -o cholmod_l_super_numeric.o
2781gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT     -fpic  -g -O2   -DDLONG -c  ../Supernodal/cholmod_super_solve.c -o cholmod_l_super_solve.o
2782gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT     -fpic  -g -O2   -DDLONG -c  ../Supernodal/cholmod_super_symbolic.c -o cholmod_l_super_symbolic.o
2783ar -rucs ../../CHOLMOD.a cholmod_aat.o cholmod_add.o cholmod_band.o cholmod_change_factor.o cholmod_common.o cholmod_complex.o cholmod_copy.o cholmod_dense.o cholmod_error.o cholmod_factor.o cholmod_memory.o cholmod_sparse.o cholmod_transpose.o cholmod_triplet.o cholmod_version.o cholmod_check.o cholmod_read.o cholmod_write.o cholmod_amd.o cholmod_analyze.o cholmod_colamd.o cholmod_etree.o cholmod_factorize.o cholmod_postorder.o cholmod_rcond.o cholmod_resymbol.o cholmod_rowcolcounts.o cholmod_rowfac.o cholmod_solve.o cholmod_spsolve.o cholmod_drop.o cholmod_horzcat.o cholmod_norm.o cholmod_scale.o cholmod_sdmult.o cholmod_ssmult.o cholmod_submatrix.o cholmod_vertcat.o cholmod_symmetry.o cholmod_rowadd.o cholmod_rowdel.o cholmod_updown.o cholmod_super_numeric.o cholmod_super_solve.o cholmod_super_symbolic.o  cholmod_l_aat.o cholmod_l_add.o cholmod_l_band.o cholmod_l_change_factor.o cholmod_l_common.o cholmod_l_complex.o cholmod_l_copy.o cholmod_l_dense.o cholmod_l_error.o cholmod_l_factor.o cholmod_l_memory.o cholmod_l_sparse.o cholmod_l_transpose.o cholmod_l_triplet.o cholmod_l_version.o cholmod_l_check.o cholmod_l_read.o cholmod_l_write.o cholmod_l_amd.o cholmod_l_analyze.o cholmod_l_colamd.o cholmod_l_etree.o cholmod_l_factorize.o cholmod_l_postorder.o cholmod_l_rcond.o cholmod_l_resymbol.o cholmod_l_rowcolcounts.o cholmod_l_rowfac.o cholmod_l_solve.o cholmod_l_spsolve.o cholmod_l_drop.o cholmod_l_horzcat.o cholmod_l_norm.o cholmod_l_scale.o cholmod_l_sdmult.o cholmod_l_ssmult.o cholmod_l_submatrix.o cholmod_l_vertcat.o cholmod_l_symmetry.o cholmod_l_rowadd.o cholmod_l_rowdel.o cholmod_l_updown.o cholmod_l_super_numeric.o cholmod_l_super_solve.o cholmod_l_super_symbolic.o
2784ar: `u' modifier ignored since `D' is the default (see `U')
2785make[8]: Leaving directory '/tmp/Rtmp04a3UD/R.INSTALL71f9552cf55c/Matrix/src/CHOLMOD/Lib'
2786make[7]: Leaving directory '/tmp/Rtmp04a3UD/R.INSTALL71f9552cf55c/Matrix/src/CHOLMOD'
2787make[7]: Entering directory '/tmp/Rtmp04a3UD/R.INSTALL71f9552cf55c/Matrix/src/COLAMD'
2788( cd Source ; make lib )
2789make[8]: Entering directory '/tmp/Rtmp04a3UD/R.INSTALL71f9552cf55c/Matrix/src/COLAMD/Source'
2790gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG -I../Include -I../../SuiteSparse_config     -fpic  -g -O2   -c colamd_global.c -o colamd_global.o
2791gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG -I../Include -I../../SuiteSparse_config     -fpic  -g -O2   -c colamd.c -o colamd.o
2792gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG -I../Include -I../../SuiteSparse_config     -fpic  -g -O2   -I../Include -DDLONG -c colamd.c -o colamd_l.o
2793ar -rucs ../../COLAMD.a colamd_global.o colamd.o colamd_l.o
2794ar: `u' modifier ignored since `D' is the default (see `U')
2795make[8]: Leaving directory '/tmp/Rtmp04a3UD/R.INSTALL71f9552cf55c/Matrix/src/COLAMD/Source'
2796make[7]: Leaving directory '/tmp/Rtmp04a3UD/R.INSTALL71f9552cf55c/Matrix/src/COLAMD'
2797make[7]: Entering directory '/tmp/Rtmp04a3UD/R.INSTALL71f9552cf55c/Matrix/src/AMD'
2798( cd Source ; make lib )
2799make[8]: Entering directory '/tmp/Rtmp04a3UD/R.INSTALL71f9552cf55c/Matrix/src/AMD/Source'
2800gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG -I../Include -I../../SuiteSparse_config     -fpic  -g -O2   -I../Include -DDINT -c amd_aat.c -o amd_i_aat.o
2801gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG -I../Include -I../../SuiteSparse_config     -fpic  -g -O2   -I../Include -DDLONG -c amd_aat.c -o amd_l_aat.o
2802gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG -I../Include -I../../SuiteSparse_config     -fpic  -g -O2   -I../Include -DDINT -c amd_1.c -o amd_i_1.o
2803gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG -I../Include -I../../SuiteSparse_config     -fpic  -g -O2   -I../Include -DDLONG -c amd_1.c -o amd_l_1.o
2804gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG -I../Include -I../../SuiteSparse_config     -fpic  -g -O2   -I../Include -DDINT -c amd_2.c -o amd_i_2.o
2805gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG -I../Include -I../../SuiteSparse_config     -fpic  -g -O2   -I../Include -DDLONG -c amd_2.c -o amd_l_2.o
2806gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG -I../Include -I../../SuiteSparse_config     -fpic  -g -O2   -I../Include -DDINT -c amd_postorder.c -o amd_i_postorder.o
2807gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG -I../Include -I../../SuiteSparse_config     -fpic  -g -O2   -I../Include -DDLONG -c amd_postorder.c -o amd_l_postorder.o
2808gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG -I../Include -I../../SuiteSparse_config     -fpic  -g -O2   -I../Include -DDINT -c amd_post_tree.c -o amd_i_post_tree.o
2809gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG -I../Include -I../../SuiteSparse_config     -fpic  -g -O2   -I../Include -DDLONG -c amd_post_tree.c -o amd_l_post_tree.o
2810gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG -I../Include -I../../SuiteSparse_config     -fpic  -g -O2   -I../Include -DDINT -c amd_defaults.c -o amd_i_defaults.o
2811gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG -I../Include -I../../SuiteSparse_config     -fpic  -g -O2   -I../Include -DDLONG -c amd_defaults.c -o amd_l_defaults.o
2812gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG -I../Include -I../../SuiteSparse_config     -fpic  -g -O2   -I../Include -DDINT -c amd_order.c -o amd_i_order.o
2813gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG -I../Include -I../../SuiteSparse_config     -fpic  -g -O2   -I../Include -DDLONG -c amd_order.c -o amd_l_order.o
2814gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG -I../Include -I../../SuiteSparse_config     -fpic  -g -O2   -I../Include -DDINT -c amd_control.c -o amd_i_control.o
2815gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG -I../Include -I../../SuiteSparse_config     -fpic  -g -O2   -I../Include -DDLONG -c amd_control.c -o amd_l_control.o
2816gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG -I../Include -I../../SuiteSparse_config     -fpic  -g -O2   -I../Include -DDINT -c amd_info.c -o amd_i_info.o
2817gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG -I../Include -I../../SuiteSparse_config     -fpic  -g -O2   -I../Include -DDLONG -c amd_info.c -o amd_l_info.o
2818gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG -I../Include -I../../SuiteSparse_config     -fpic  -g -O2   -I../Include -DDINT -c amd_valid.c -o amd_i_valid.o
2819gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG -I../Include -I../../SuiteSparse_config     -fpic  -g -O2   -I../Include -DDLONG -c amd_valid.c -o amd_l_valid.o
2820gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG -I../Include -I../../SuiteSparse_config     -fpic  -g -O2   -I../Include -DDINT -c amd_preprocess.c -o amd_i_preprocess.o
2821gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG -I../Include -I../../SuiteSparse_config     -fpic  -g -O2   -I../Include -DDLONG -c amd_preprocess.c -o amd_l_preprocess.o
2822gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG -I../Include -I../../SuiteSparse_config     -fpic  -g -O2   -I../Include -DDINT -c amd_dump.c -o amd_i_dump.o
2823gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG -I../Include -I../../SuiteSparse_config     -fpic  -g -O2   -I../Include -DDLONG -c amd_dump.c -o amd_l_dump.o
2824gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG -I../Include -I../../SuiteSparse_config     -fpic  -g -O2   -I../Include -DDINT -c amd_global.c -o amd_i_global.o
2825gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG -I../Include -I../../SuiteSparse_config     -fpic  -g -O2   -I../Include -DDLONG -c amd_global.c -o amd_l_global.o
2826ar -rucs ../../AMD.a amd_i_aat.o amd_l_aat.o amd_i_1.o amd_l_1.o amd_i_2.o amd_l_2.o amd_i_postorder.o amd_l_postorder.o amd_i_post_tree.o amd_l_post_tree.o amd_i_defaults.o amd_l_defaults.o amd_i_order.o amd_l_order.o amd_i_control.o amd_l_control.o amd_i_info.o amd_l_info.o amd_i_valid.o amd_l_valid.o amd_i_preprocess.o amd_l_preprocess.o amd_i_dump.o amd_l_dump.o amd_i_global.o amd_l_global.o
2827ar: `u' modifier ignored since `D' is the default (see `U')
2828make[8]: Leaving directory '/tmp/Rtmp04a3UD/R.INSTALL71f9552cf55c/Matrix/src/AMD/Source'
2829make[7]: Leaving directory '/tmp/Rtmp04a3UD/R.INSTALL71f9552cf55c/Matrix/src/AMD'
2830make[7]: Entering directory '/tmp/Rtmp04a3UD/R.INSTALL71f9552cf55c/Matrix/src/SuiteSparse_config'
2831gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG -DNTIMER     -fpic  -g -O2   -c SuiteSparse_config.c -o SuiteSparse_config.o
2832ar -rucs ../SuiteSparse_config.a SuiteSparse_config.o
2833ar: `u' modifier ignored since `D' is the default (see `U')
2834make[7]: Leaving directory '/tmp/Rtmp04a3UD/R.INSTALL71f9552cf55c/Matrix/src/SuiteSparse_config'
2835gcc -shared -L/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/lib -L/usr/local/sage-7/local/lib -Wl,-rpath,/usr/local/sage-7/local/lib -o Matrix.so CHMfactor.o Csparse.o TMatrix_as.o Tsparse.o init.o Mutils.o chm_common.o cs.o cs_utils.o dense.o dgCMatrix.o dgTMatrix.o dgeMatrix.o dpoMatrix.o dppMatrix.o dsCMatrix.o dsyMatrix.o dspMatrix.o dtCMatrix.o dtTMatrix.o dtrMatrix.o dtpMatrix.o factorizations.o ldense.o lgCMatrix.o sparseQR.o abIndex.o CHOLMOD.a COLAMD.a AMD.a SuiteSparse_config.a -L/usr/local/sage-7/local/lib -llapack -lf77blas -lcblas -latlas -L/usr/local/sage-7/local/lib -lf77blas -latlas -lgfortran -lm -lquadmath -L/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/lib -lR
2836make[6]: Leaving directory '/tmp/Rtmp04a3UD/R.INSTALL71f9552cf55c/Matrix/src'
2837installing to /usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/library/Matrix/libs
2838** R
2839** data
2840** inst
2841** byte-compile and prepare package for lazy loading
2842Creating a generic function for 'image' from package 'graphics' in package 'Matrix'
2843Creating a generic function for 'solve' from package 'base' in package 'Matrix'
2844Creating a generic function for 'chol2inv' from 'base' in package 'Matrix'
2845    (from the saved implicit definition)
2846Creating a generic function for 'chol2inv' from package 'base' in package 'Matrix'
2847Creating a generic function for 'determinant' from package 'base' in package 'Matrix'
2848Creating a generic function for 'update' from package 'stats' in package 'Matrix'
2849Creating a generic function for 'as.vector' from package 'base' in package 'Matrix'
2850Creating a generic function for 't' from package 'base' in package 'Matrix'
2851Creating a generic function for 'diag' from package 'base' in package 'Matrix'
2852Creating a generic function for 'as.matrix' from package 'base' in package 'Matrix'
2853Creating a generic function for 'as.array' from package 'base' in package 'Matrix'
2854Creating a generic function for 'head' from package 'utils' in package 'Matrix'
2855Creating a generic function for 'tail' from package 'utils' in package 'Matrix'
2856Creating a generic function for 'drop' from package 'base' in package 'Matrix'
2857Creating a generic function for 'mean' from package 'base' in package 'Matrix'
2858Creating a generic function for 'cov2cor' from package 'stats' in package 'Matrix'
2859Creating a generic function for 'isSymmetric' from package 'base' in package 'Matrix'
2860Creating a generic function for 'unname' from package 'base' in package 'Matrix'
2861Creating a generic function for 'chol' from package 'base' in package 'Matrix'
2862Creating a generic function for 'norm' from package 'base' in package 'Matrix'
2863Creating a generic function for 'rcond' from 'base' in package 'Matrix'
2864    (from the saved implicit definition)
2865Creating a generic function for 'rcond' from package 'base' in package 'Matrix'
2866Creating a generic function for 'all.equal' from package 'base' in package 'Matrix'
2867Creating a generic function for 'diff' from package 'base' in package 'Matrix'
2868in method for 'coerce' with signature '"matrix.csr","dgRMatrix"': no definition for class "matrix.csr"
2869in method for 'coerce' with signature '"dgRMatrix","matrix.csr"': no definition for class "matrix.csr"
2870in method for 'coerce' with signature '"matrix.csc","dgCMatrix"': no definition for class "matrix.csc"
2871in method for 'coerce' with signature '"dgCMatrix","matrix.csc"': no definition for class "matrix.csc"
2872in method for 'coerce' with signature '"matrix.coo","dgTMatrix"': no definition for class "matrix.coo"
2873in method for 'coerce' with signature '"dgTMatrix","matrix.coo"': no definition for class "matrix.coo"
2874in method for 'coerce' with signature '"dsparseMatrix","matrix.csr"': no definition for class "matrix.csr"
2875in method for 'coerce' with signature '"matrix.csr","dgCMatrix"': no definition for class "matrix.csr"
2876in method for 'coerce' with signature '"matrix.coo","dgCMatrix"': no definition for class "matrix.coo"
2877in method for 'coerce' with signature '"matrix.csr","RsparseMatrix"': no definition for class "matrix.csr"
2878in method for 'coerce' with signature '"matrix.csc","CsparseMatrix"': no definition for class "matrix.csc"
2879in method for 'coerce' with signature '"matrix.coo","TsparseMatrix"': no definition for class "matrix.coo"
2880in method for 'coerce' with signature '"matrix.csr","CsparseMatrix"': no definition for class "matrix.csr"
2881in method for 'coerce' with signature '"matrix.coo","CsparseMatrix"': no definition for class "matrix.coo"
2882in method for 'coerce' with signature '"matrix.csc","TsparseMatrix"': no definition for class "matrix.csc"
2883in method for 'coerce' with signature '"matrix.csr","TsparseMatrix"': no definition for class "matrix.csr"
2884in method for 'coerce' with signature '"CsparseMatrix","matrix.csr"': no definition for class "matrix.csr"
2885in method for 'coerce' with signature '"CsparseMatrix","matrix.coo"': no definition for class "matrix.coo"
2886in method for 'coerce' with signature '"CsparseMatrix","matrix.csc"': no definition for class "matrix.csc"
2887in method for 'coerce' with signature '"matrix.csr","Matrix"': no definition for class "matrix.csr"
2888in method for 'coerce' with signature '"matrix.coo","Matrix"': no definition for class "matrix.coo"
2889in method for 'coerce' with signature '"matrix.csc","Matrix"': no definition for class "matrix.csc"
2890Creating a generic function for 'colSums' from package 'base' in package 'Matrix'
2891Creating a generic function for 'colMeans' from package 'base' in package 'Matrix'
2892Creating a generic function for 'rowSums' from package 'base' in package 'Matrix'
2893Creating a generic function for 'rowMeans' from package 'base' in package 'Matrix'
2894in method for 'colSums' with signature 'x="igCMatrix"': no definition for class "igCMatrix"
2895in method for 'rowSums' with signature 'x="igCMatrix"': no definition for class "igCMatrix"
2896in method for 'colMeans' with signature 'x="igCMatrix"': no definition for class "igCMatrix"
2897in method for 'rowMeans' with signature 'x="igCMatrix"': no definition for class "igCMatrix"
2898Creating a generic function for 'zapsmall' from package 'base' in package 'Matrix'
2899Creating a generic function for 'qr' from package 'base' in package 'Matrix'
2900Creating a generic function for 'diag<-' from package 'base' in package 'Matrix'
2901Creating a generic function for 'crossprod' from package 'base' in package 'Matrix'
2902Creating a generic function for 'tcrossprod' from package 'base' in package 'Matrix'
2903Creating a generic function for 'print' from package 'base' in package 'Matrix'
2904Creating a generic function for 'summary' from package 'base' in package 'Matrix'
2905Creating a generic function for 'which' from package 'base' in package 'Matrix'
2906in method for 'coerce' with signature '"graphAM","sparseMatrix"': no definition for class "graphAM"
2907in method for 'coerce' with signature '"graph","CsparseMatrix"': no definition for class "graph"
2908in method for 'coerce' with signature '"graph","Matrix"': no definition for class "graph"
2909in method for 'coerce' with signature '"graphNEL","CsparseMatrix"': no definition for class "graphNEL"
2910in method for 'coerce' with signature '"graphNEL","TsparseMatrix"': no definition for class "graphNEL"
2911in method for 'coerce' with signature '"sparseMatrix","graph"': no definition for class "graph"
2912in method for 'coerce' with signature '"sparseMatrix","graphNEL"': no definition for class "graphNEL"
2913in method for 'coerce' with signature '"TsparseMatrix","graphNEL"': no definition for class "graphNEL"
2914Creating a generic function for 'format' from package 'base' in package 'Matrix'
2915Creating a generic function for 'qr.R' from package 'base' in package 'Matrix'
2916Creating a generic function for 'qr.Q' from package 'base' in package 'Matrix'
2917Creating a generic function for 'qr.qy' from package 'base' in package 'Matrix'
2918Creating a generic function for 'qr.qty' from package 'base' in package 'Matrix'
2919Creating a generic function for 'qr.coef' from package 'base' in package 'Matrix'
2920Creating a generic function for 'qr.resid' from package 'base' in package 'Matrix'
2921Creating a generic function for 'qr.fitted' from package 'base' in package 'Matrix'
2922Creating a generic function for 'toeplitz' from package 'stats' in package 'Matrix'
2923** help
2924*** installing help indices
2925** building package indices
2926Loading required package: Matrix
2927** installing vignettes
2928** testing if installed package can be loaded
2929* DONE (Matrix)
2930begin installing recommended package mgcv
2931* installing *source* package 'mgcv' ...
2932** package 'mgcv' successfully unpacked and MD5 sums checked
2933** libs
2934make[6]: Entering directory '/tmp/RtmplD6F1E/R.INSTALL74656be632a7/mgcv/src'
2935gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG     -fopenmp -fpic  -g -O2   -c coxph.c -o coxph.o
2936gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG     -fopenmp -fpic  -g -O2   -c discrete.c -o discrete.o
2937gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG     -fopenmp -fpic  -g -O2   -c gdi.c -o gdi.o
2938gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG     -fopenmp -fpic  -g -O2   -c init.c -o init.o
2939gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG     -fopenmp -fpic  -g -O2   -c magic.c -o magic.o
2940gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG     -fopenmp -fpic  -g -O2   -c mat.c -o mat.o
2941gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG     -fopenmp -fpic  -g -O2   -c matrix.c -o matrix.o
2942gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG     -fopenmp -fpic  -g -O2   -c mgcv.c -o mgcv.o
2943gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG     -fopenmp -fpic  -g -O2   -c misc.c -o misc.o
2944gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG     -fopenmp -fpic  -g -O2   -c mvn.c -o mvn.o
2945gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG     -fopenmp -fpic  -g -O2   -c qp.c -o qp.o
2946gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG     -fopenmp -fpic  -g -O2   -c soap.c -o soap.o
2947gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG     -fopenmp -fpic  -g -O2   -c sparse-smooth.c -o sparse-smooth.o
2948gcc -I/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/include -DNDEBUG     -fopenmp -fpic  -g -O2   -c tprs.c -o tprs.o
2949gcc -shared -L/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/lib -L/usr/local/sage-7/local/lib -Wl,-rpath,/usr/local/sage-7/local/lib -o mgcv.so coxph.o discrete.o gdi.o init.o magic.o mat.o matrix.o mgcv.o misc.o mvn.o qp.o soap.o sparse-smooth.o tprs.o -L/usr/local/sage-7/local/lib -llapack -lf77blas -lcblas -latlas -L/usr/local/sage-7/local/lib -lf77blas -latlas -lgfortran -lm -lquadmath -fopenmp -L/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/lib -lR
2950make[6]: Leaving directory '/tmp/RtmplD6F1E/R.INSTALL74656be632a7/mgcv/src'
2951installing to /usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/library/mgcv/libs
2952** R
2953** data
2954** inst
2955** byte-compile and prepare package for lazy loading
2956** help
2957*** installing help indices
2958** building package indices
2959** testing if installed package can be loaded
2960* DONE (mgcv)
2961make[5]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/Recommended'
2962make[4]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library/Recommended'
2963make[4]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library'
2964building/updating vignettes for package 'grid' ...
2965building/updating vignettes for package 'parallel' ...
2966building/updating vignettes for package 'utils' ...
2967make[4]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library'
2968make[3]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src'
2969make[3]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src'
2970mkdir -p -- /usr/local/sage-7/local/lib/R
2971make[4]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/m4'
2972make[4]: Nothing to be done for 'install'.
2973make[4]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/m4'
2974make[4]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/tools'
2975make[4]: Nothing to be done for 'install'.
2976make[4]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/tools'
2977make[4]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/doc'
2978installing doc ...
2979mkdir -p -- /usr/local/sage-7/local/lib/R/doc
2980mkdir -p -- /usr/local/sage-7/local/lib/R/doc
2981make[5]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/doc/html'
2982installing doc/html ...
2983mkdir -p -- /usr/local/sage-7/local/lib/R/doc/html
2984make[5]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/doc/html'
2985make[5]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/doc/manual'
2986installing doc/manual ...
2987mkdir -p -- /usr/local/sage-7/local/lib/R/doc/manual
2988mkdir -p -- /usr/local/sage-7/local/lib/R/doc/manual/images
2989make[5]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/doc/manual'
2990make[4]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/doc'
2991make[4]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/etc'
2992mkdir -p -- /usr/local/sage-7/local/lib/R/etc
2993installing etc ...
2994make[4]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/etc'
2995make[4]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/share'
2996installing share ...
2997mkdir -p -- /usr/local/sage-7/local/lib/R/share
2998mkdir -p -- /usr/local/sage-7/local/lib/R/share/R
2999mkdir -p -- /usr/local/sage-7/local/lib/R/share/dictionaries
3000mkdir -p -- /usr/local/sage-7/local/lib/R/share/encodings
3001mkdir -p -- /usr/local/sage-7/local/lib/R/share/java
3002mkdir -p -- /usr/local/sage-7/local/lib/R/share/licenses
3003mkdir -p -- /usr/local/sage-7/local/lib/R/share/make
3004mkdir -p -- /usr/local/sage-7/local/lib/R/share/Rd
3005mkdir -p -- /usr/local/sage-7/local/lib/R/share/Rd/macros
3006mkdir -p -- /usr/local/sage-7/local/lib/R/share/sh
3007mkdir -p -- /usr/local/sage-7/local/lib/R/share/texmf
3008mkdir -p -- /usr/local/sage-7/local/lib/R/share/texmf/bibtex/bib
3009mkdir -p -- /usr/local/sage-7/local/lib/R/share/texmf/bibtex/bst
3010mkdir -p -- /usr/local/sage-7/local/lib/R/share/texmf/tex/latex
3011make[4]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/share'
3012make[4]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src'
3013make[5]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/scripts'
3014mkdir -p -- /usr/local/sage-7/local/lib/R/bin
3015make[5]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/scripts'
3016make[5]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/include'
3017mkdir -p -- /usr/local/sage-7/local/lib/R/include
3018make[6]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/include/R_ext'
3019mkdir -p -- /usr/local/sage-7/local/lib/R/include/R_ext
3020make[6]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/include/R_ext'
3021make[5]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/include'
3022make[5]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/extra'
3023make[6]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/extra/blas'
3024make[6]: Nothing to be done for 'install'.
3025make[6]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/extra/blas'
3026make[6]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/extra/bzip2'
3027make[6]: Nothing to be done for 'install'.
3028make[6]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/extra/bzip2'
3029make[6]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/extra/pcre'
3030make[6]: Nothing to be done for 'install'.
3031make[6]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/extra/pcre'
3032make[6]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/extra/tre'
3033make[6]: Nothing to be done for 'install'.
3034make[6]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/extra/tre'
3035make[6]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/extra/xdr'
3036make[6]: Nothing to be done for 'install'.
3037make[6]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/extra/xdr'
3038make[6]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/extra/xz'
3039make[6]: Nothing to be done for 'install'.
3040make[6]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/extra/xz'
3041make[6]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/extra/zlib'
3042make[6]: Nothing to be done for 'install'.
3043make[6]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/extra/zlib'
3044make[6]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/extra/intl'
3045make[6]: Nothing to be done for 'install'.
3046make[6]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/extra/intl'
3047make[5]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/extra'
3048make[5]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/appl'
3049make[5]: Nothing to be done for 'install'.
3050make[5]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/appl'
3051make[5]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/nmath'
3052make[5]: Nothing to be done for 'install'.
3053make[5]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/nmath'
3054make[5]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/unix'
3055gcc -I. -I../../src/include -I../../src/include   -DHAVE_CONFIG_H    -g -O2   -L/usr/local/sage-7/local/lib -Wl,-rpath,/usr/local/sage-7/local/lib  -DR_HOME='"/usr/local/sage-7/local/lib/R"' \
3056  -o Rscript ./Rscript.c
3057make[5]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/unix'
3058make[5]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/main'
3059mkdir -p -- /usr/local/sage-7/local/lib/R/bin/exec
3060make[6]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/main'
3061make[6]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/main'
3062make[6]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/main'
3063mkdir -p -- /usr/local/sage-7/local/lib/R/lib
3064make[6]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/main'
3065make[5]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/main'
3066make[5]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/modules'
3067make[6]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/modules/internet'
3068mkdir -p -- /usr/local/sage-7/local/lib/R/modules
3069make[6]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/modules/internet'
3070make[6]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/modules/lapack'
3071make[6]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/modules/lapack'
3072make[6]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/modules/X11'
3073make[6]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/modules/X11'
3074make[5]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/modules'
3075make[5]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library'
3076mkdir -p -- /usr/local/sage-7/local/lib/R/library
3077installing packages ...
3078  building HTML index ...
3079make[5]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src/library'
3080make[4]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/src'
3081make[4]: Entering directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/tests'
3082make[4]: Nothing to be done for 'install'.
3083make[4]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src/tests'
3084make[3]: Leaving directory '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0/src'
3085
3086real    3m28.000s
3087user    7m11.236s
3088sys     0m16.252s
3089Successfully installed r-3.2.4.p0
3090Deleting temporary build directory
3091/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4.p0
3092Finished installing r-3.2.4.p0.spkg