| 1 | Found local metadata for r-3.2.4-revised.p0 |
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| 2 | Using cached file /usr/local/sage-7/upstream/R-3.2.4-revised.tar.gz |
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| 3 | r-3.2.4-revised.p0 |
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| 4 | ==================================================== |
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| 5 | Setting up build directory for r-3.2.4-revised.p0 |
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| 6 | mv: cannot stat 'R-3.2.4-revised*': No such file or directory |
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| 7 | Finished set up |
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| 8 | **************************************************** |
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| 9 | Host system: |
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| 10 | Linux SAP5057241 4.4.0-1-amd64 #1 SMP Debian 4.4.6-1 (2016-03-17) x86_64 GNU/Linux |
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| 11 | **************************************************** |
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| 12 | C compiler: gcc |
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| 13 | C compiler version: |
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| 14 | Using built-in specs. |
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| 15 | COLLECT_GCC=gcc |
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| 16 | COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/5/lto-wrapper |
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| 17 | Target: x86_64-linux-gnu |
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| 18 | Configured with: ../src/configure -v --with-pkgversion='Debian 5.3.1-12' --with-bugurl=file:///usr/share/doc/gcc-5/README.Bugs --enable-languages=c,ada,c++,java,go,d,fortran,objc,obj-c++ --prefix=/usr --program-suffix=-5 --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --with-sysroot=/ --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-vtable-verify --enable-libmpx --enable-plugin --with-system-zlib --disable-browser-plugin --enable-java-awt=gtk --enable-gtk-cairo --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-5-amd64/jre --enable-java-home --with-jvm-root-dir=/usr/lib/jvm/java-1.5.0-gcj-5-amd64 --with-jvm-jar-dir=/usr/lib/jvm-exports/java-1.5.0-gcj-5-amd64 --with-arch-directory=amd64 --with-ecj-jar=/usr/share/java/eclipse-ecj.jar --enable-objc-gc --enable-multiarch --with-arch-32=i586 --with-abi=m64 --with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu |
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| 19 | Thread model: posix |
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| 20 | gcc version 5.3.1 20160316 (Debian 5.3.1-12) |
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| 21 | **************************************************** |
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| 22 | R_CONFIGURE_BLAS=--with-blas=-L/usr/local/sage-7/local/lib -lf77blas -latlas |
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| 23 | R_CONFIGURE_LAPACK=--with-lapack=-L/usr/local/sage-7/local/lib -llapack -lf77blas -lcblas -latlas |
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| 24 | ./spkg-install: line 108: cd: src: No such file or directory |
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| 25 | ./spkg-install: line 134: ./configure: No such file or directory |
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| 26 | Configuring R without X11 |
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| 27 | ./spkg-install: line 134: ./configure: No such file or directory |
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| 28 | Error configuring R. |
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| 29 | |
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| 30 | real 0m0.014s |
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| 31 | user 0m0.000s |
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| 32 | sys 0m0.000s |
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| 33 | ************************************************************************ |
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| 34 | Error installing package r-3.2.4-revised.p0 |
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| 35 | ************************************************************************ |
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| 36 | Please email sage-devel (http://groups.google.com/group/sage-devel) |
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| 37 | explaining the problem and including the relevant part of the log file |
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| 38 | /usr/local/sage-7/logs/pkgs/r-3.2.4-revised.p0.log |
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| 39 | Describe your computer, operating system, etc. |
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| 40 | If you want to try to fix the problem yourself, *don't* just cd to |
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| 41 | /usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4-revised.p0 and type 'make' or whatever is appropriate. |
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| 42 | Instead, the following commands setup all environment variables |
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| 43 | correctly and load a subshell for you to debug the error: |
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| 44 | (cd '/usr/local/sage-7/local/var/tmp/sage/build/r-3.2.4-revised.p0' && '/usr/local/sage-7/sage' --sh) |
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| 45 | When you are done debugging, you can type "exit" to leave the subshell. |
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| 46 | ************************************************************************ |
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