Ticket #12173: flint-2.3.diff

File flint-2.3.diff, 29.6 KB (added by jdemeyer, 9 years ago)

Spkg diff, for review only.

  • SPKG.txt 

    # HG changeset patch
# User Jean-Pierre Flori <jean-pierre.flor@ssi.gouv.fr>
# Date 1364403626 -3600
# Node ID 63675866eb180215e180bb6d5732ecdb5edf2c4f
# Parent  219b9de5052506548e4ec0a6658af61219a4143c
#12173: Update FLINT to version 2.3

diff --git a/SPKG.txt b/SPKG.txt
    a b  
    22
    33== Description ==
    44
    5 FLINT is a C library for doing number theory, written by William Hart and David Harvey.
     5FLINT is a C library for doing number theory, maintained by William Hart.
    66
    77Website: www.flintlib.org
    88
    99== License ==
    1010
    11 GPL V2+
     11FLINT is licensed GPL v2+.
    1212
    1313== SPKG Maintainers ==
    1414
    15  * Burcin Erocal
    16  * Mike Hansen
    17  * William Stein
     15 * Fredrik Johansson
     16 * Jean-Pierre Flori
    1817
    1918== Upstream Contact ==
    2019
    21  * Bill Hart
    22  * Development list for FLINT <flint-devel@lists.sourceforge.net> (moderated)
     20 * flint-devel Gougle Group (http://groups.google.co.uk/group/flint-devel)
     21 * William Hart
    2322
    2423== Dependencies ==
    2524
    26  * gmp
     25 * MPIR
     26 * MPFR
    2727 * NTL
    2828
    29 == Special Update/Build Instructions ==
     29== Patches ==
    3030
    31  * We patch the makefile slightly to add 64 bit OSX build support and also change
    32    LIBS such that the NTL interface is linked into the flint library.
    33    This is not an officially supported option because flint is pure C
    34    and the NTL interface requires C++.
    35  * Remove the '.svn' directories from upstream ('src/') if present.
    36  * Remove the 'src/zn_poly/demo/bernoulli/.DS_Store' file
     31 * dylib.patch: patch configure so that the shared library is called
     32   libflint.dylib on Darwin.
    3733
    3834== Changelog ==
    3935
     36=== flint-2.3.p0 (Jean-Pierre Flori, 26 March 2013) ===
     37  * Trac #12173: add dylib.patch to make sure the shared library is called
     38    libflint.dylib on Darwin
     39
     40=== flint-2.3 (Mike Hansen, Fredrik Johansson, Jean-Pierre Flori, May 2012-March 2013) ===
     41  * Trac #12173: Update FLINT to version 2.3.
     42  * Removed obsolete patches.
     43  * Cleanup spkg-install and spkg-check scripts.
     44  * Removed Cygwin hack for libntl.a made useless by #9050.
     45  * Removed now useless patch --binary flag on Cygwin.
     46  * Only build shared library on Cygwin.
     47
    4048=== flint-1.5.2.p3 (Timo Kluck, 7 March 2013) ===
    4149  * #14241: Fix double // path separators in longlong.patch
    4250
    … …  
    8694 * #9277 Add -m64 flag when building the Flint test suite
    8795   if SAGE64 is set to "yes". Otherwise it builds 32-bit
    8896   objects and so the test files are not built, but instead
    89    generating the usual "WRONG ELF CLASS" error. 
    90  * Remove a couple of lines which call spkg-check from 
    91    spkg-install if SAGE_CHECK is set to "yes". Otherwise, 
    92    spkg-check gets called twice, which is a waste of time. 
     97   generating the usual "WRONG ELF CLASS" error.
     98 * Remove a couple of lines which call spkg-check from
     99   spkg-install if SAGE_CHECK is set to "yes". Otherwise,
     100   spkg-check gets called twice, which is a waste of time.
    93101   I'm afraid to say it was probably me that put those couple
    94    of lines in a year or two ago, before I realised how 
    95    spkg-check was supposed to be called. 
     102   of lines in a year or two ago, before I realised how
     103   spkg-check was supposed to be called.
    96104
    97105=== flint-1.5.0.p4 (Jaap Spies, Feb 23th, 2010) ===
    98106 * #8112 Pass CFLAG64 to FLINT_TUNE if set for a 64 bit build.
    99107
    100108=== flint-1.5.0.p3 (David Kirkby, January  2nd, 2010) ===
    101  * #7815 Changed makes and spkg-install so that the flag -m64 got 
    102    added with a 64-bit build. 
     109 * #7815 Changed makes and spkg-install so that the flag -m64 got
     110   added with a 64-bit build.
    103111
    104112=== flint-1.5.0.p1 (William Stein, September 25th, 2009) ===
    105113 * Included a cygwin fix that involves naming the library .dll instead of .so.
    … …  
    109117
    110118=== flint-1.3.0p3 (Ondrej Certik, September 20th, 2009) ===
    111119 *  Move libntl.a out of the way temporarily on CYGWIN (this makes the package
    112     built, because it will link to the .so lib instead) 
     120    built, because it will link to the .so lib instead)
    113121
    114122=== flint-1.3.0p2 (David Kirkby, June 30th, 2009) ===
    115123 *  Change '-a' to '-p' option spkg-install so flint installs
    116124    on Solaris too. The usual GNUism. Only one byte is changed!
    117  
     125
    118126=== flint-1.3.0 (Nick Alexander, June 9th, 2009) ===
    119127 * Update to latest upstream FLINT, 1.3.0.
    120128
    … …  
    165173
    166174=== flint-1.0.20 (Michael Abshoff, December 23rd, 2008) ===
    167175 * Upgrade to latest upstream (#4861)
    168  * clean up SPKG.txt 
     176 * clean up SPKG.txt
    169177
    170178=== flint-1.0.13.p0 (Michael Abshoff, August 18th, 2008) ===
    171179 * Add 64 bit OSX support
    … …  
    185193 * Only check major and minor gcc release number, not tiny (fixes #3528)
    186194
    187195=== flint-1.010 (William Stein and Craig Citro, June 30, 2008) ===
    188  * upgrade to version 1.0.10 
     196 * upgrade to version 1.0.10
    189197
    190198=== flint-1.06.p3 (Michael Abshoff, April 1st, 2008) ===
    191199 * import shared library versioning for flint (Tim Abbott, #3259)

  • deleted file patches/ZmodF_mul.c.patch 

    diff --git a/patches/ZmodF_mul.c.patch b/patches/ZmodF_mul.c.patch
deleted file mode 100644
    + -  
    1 --- src/ZmodF_mul.c     2009-09-23 18:03:27.000000000 +0800
    2 +++ patches/ZmodF_mul.c 2011-04-25 22:32:40.000000000 +0800
    3 @@ -30,7 +30,6 @@
    4  ******************************************************************************/
    5  
    6  #include <math.h>
    7 -#include "ZmodF.h"
    8  #include "ZmodF_poly.h"
    9  #include "ZmodF_mul.h"
    10  #include "mpn_extras.h"

  • deleted file patches/ZmodF_poly.c.patch 

    diff --git a/patches/ZmodF_poly.c.patch b/patches/ZmodF_poly.c.patch
deleted file mode 100644
    + -  
    1 --- src/ZmodF_poly.c    2009-09-23 18:03:27.000000000 +0800
    2 +++ patches/ZmodF_poly.c        2011-04-25 22:37:17.000000000 +0800
    3 @@ -29,8 +29,6 @@
    4  
    5  *****************************************************************************/
    6  
    7 -#include "flint.h"
    8 -#include "memory-manager.h"
    9  #include "ZmodF_poly.h"
    10  #include "ZmodF_mul.h"
    11  #include "fmpz_poly.h"

  • new file patches/dylib.patch 

    diff --git a/patches/dylib.patch b/patches/dylib.patch
new file mode 100644
    - +  
     1diff -druN src.orig/configure src/configure
     2--- src.orig/configure  2012-11-09 21:42:47.000000000 +0100
     3+++ src/configure       2013-03-06 18:21:03.644037750 +0100
     4@@ -225,12 +225,7 @@
     5 if [ -z "$FLINT_LIB" ]; then
     6    case $OS in
     7       Darwin)
     8-         case $MACHINE in
     9-            *64)
     10-               FLINT_LIB="libflint.dylib64";;
     11-            *)
     12-               FLINT_LIB="libflint.dylib";;
     13-         esac;;
     14+         FLINT_LIB="libflint.dylib";;
     15       CYGWIN | MINGW*)
     16          FLINT_LIB="libflint.dll";;
     17       *)

  • deleted file patches/longlong.patch 

    diff --git a/patches/longlong.patch b/patches/longlong.patch
deleted file mode 100644
    + -  
    1 diff -ur flint-1.5.2.orig/longlong.h flint-1.5.2/longlong.h
    2 --- flint-1.5.2.orig/longlong.h 2009-09-23 12:03:27.000000000 +0200
    3 +++ flint-1.5.2/longlong.h      2010-11-25 07:00:41.000000000 +0100
    4 @@ -411,46 +411,6 @@
    5    __asm__ ("adds\t%1, %4, %5\n\tadc\t%0, %2, %3"                       \
    6            : "=r" (sh), "=&r" (sl)                                      \
    7            : "r" (ah), "rI" (bh), "%r" (al), "rI" (bl) __CLOBBER_CC)
    8 -#define sub_ddmmss(sh, sl, ah, al, bh, bl) \
    9 -  do {                                                                 \
    10 -    if (__builtin_constant_p (al))                                     \
    11 -      {                                                                        \
    12 -       if (__builtin_constant_p (ah))                                  \
    13 -         __asm__ ("rsbs\t%1, %5, %4\n\trsc\t%0, %3, %2"                \
    14 -                  : "=r" (sh), "=&r" (sl)                              \
    15 -                  : "rI" (ah), "r" (bh), "rI" (al), "r" (bl) __CLOBBER_CC); \
    16 -       else                                                            \
    17 -         __asm__ ("rsbs\t%1, %5, %4\n\tsbc\t%0, %2, %3"                \
    18 -                  : "=r" (sh), "=&r" (sl)                              \
    19 -                  : "r" (ah), "rI" (bh), "rI" (al), "r" (bl) __CLOBBER_CC); \
    20 -      }                                                                        \
    21 -    else if (__builtin_constant_p (ah))                                        \
    22 -      {                                                                        \
    23 -       if (__builtin_constant_p (bl))                                  \
    24 -         __asm__ ("subs\t%1, %4, %5\n\trsc\t%0, %3, %2"                \
    25 -                  : "=r" (sh), "=&r" (sl)                              \
    26 -                  : "rI" (ah), "r" (bh), "r" (al), "rI" (bl) __CLOBBER_CC); \
    27 -       else                                                            \
    28 -         __asm__ ("rsbs\t%1, %5, %4\n\trsc\t%0, %3, %2"                \
    29 -                  : "=r" (sh), "=&r" (sl)                              \
    30 -                  : "rI" (ah), "r" (bh), "rI" (al), "r" (bl) __CLOBBER_CC); \
    31 -      }                                                                        \
    32 -    else if (__builtin_constant_p (bl))                                        \
    33 -      {                                                                        \
    34 -       if (__builtin_constant_p (bh))                                  \
    35 -         __asm__ ("subs\t%1, %4, %5\n\tsbc\t%0, %2, %3"                \
    36 -                  : "=r" (sh), "=&r" (sl)                              \
    37 -                  : "r" (ah), "rI" (bh), "r" (al), "rI" (bl) __CLOBBER_CC); \
    38 -       else                                                            \
    39 -         __asm__ ("subs\t%1, %4, %5\n\trsc\t%0, %3, %2"                \
    40 -                  : "=r" (sh), "=&r" (sl)                              \
    41 -                  : "rI" (ah), "r" (bh), "r" (al), "rI" (bl) __CLOBBER_CC); \
    42 -      }                                                                        \
    43 -    else /* only bh might be a constant */                             \
    44 -      __asm__ ("subs\t%1, %4, %5\n\tsbc\t%0, %2, %3"                   \
    45 -              : "=r" (sh), "=&r" (sl)                                  \
    46 -              : "r" (ah), "rI" (bh), "r" (al), "rI" (bl) __CLOBBER_CC);\
    47 -    } while (0)
    48  #if 1 || defined (__arm_m__)   /* `M' series has widening multiply support */
    49  #define umul_ppmm(xh, xl, a, b) \
    50    __asm__ ("umull %0,%1,%2,%3" : "=&r" (xl), "=&r" (xh) : "r" (a), "r" (b))

  • deleted file patches/makefile.patch 

    diff --git a/patches/makefile.patch b/patches/makefile.patch
deleted file mode 100644
    + -  
    1 --- src/makefile        2009-09-23 12:03:27.000000000 +0200
    2 +++ patches/makefile    2010-01-02 07:00:32.000000000 +0100
    3 @@ -1,3 +1,5 @@
    4 +# sage depends on the NTL interface, so we include it in the flint library
    5 +
    6  LIBDIR=$(PREFIX)/lib
    7  INCLUDEDIR=$(PREFIX)/include
    8  DOCDIR=$(PREFIX)/doc
    9 @@ -22,7 +24,8 @@
    10  
    11  CPP = $(FLINT_CPP)
    12  
    13 -LIBS = -L$(FLINT_GMP_LIB_DIR) $(FLINT_LINK_OPTIONS) -lgmp -lpthread -lm
    14 +# add NTL options so that NTL interface links properly
    15 +LIBS = -L$(FLINT_GMP_LIB_DIR) -L$(FLINT_NTL_LIB_DIR) $(FLINT_LINK_OPTIONS) -lgmp -lpthread -lntl -lm
    16  
    17  LIBS2 = -L$(FLINT_GMP_LIB_DIR) -L$(FLINT_NTL_LIB_DIR) $(FLINT_LINK_OPTIONS) -lgmp -lpthread -lntl -lm
    18  
    19 @@ -66,7 +69,8 @@
    20         theta.h \
    21         zmod_mat.h \
    22         F_mpz.h \
    23 -       QS/tinyQS.h
    24 +       QS/tinyQS.h \
    25 +       NTL-interface.h
    26  
    27  ####### library object files
    28  
    29 @@ -109,13 +113,14 @@
    30         poly.o \
    31         sieve.o \
    32         linear_algebra.o \
    33 -       block_lanczos.o
    34 +       block_lanczos.o \
    35 +       NTL-interface.o
    36  
    37  QS: mpQS
    38  
    39  tune: ZmodF_mul-tune mpz_poly-tune
    40  
    41 -test: F_mpz-test mpn_extras-test fmpz_poly-test fmpz-test ZmodF-test ZmodF_poly-test mpz_poly-test ZmodF_mul-test long_extras-test zmod_poly-test zmod_mat-test
    42 +test: F_mpz-test mpn_extras-test fmpz_poly-test fmpz-test ZmodF-test ZmodF_poly-test mpz_poly-test ZmodF_mul-test long_extras-test zmod_poly-test zmod_mat-test NTL-interface-test
    43  
    44  check: test
    45         ./F_mpz-test
    46 @@ -139,16 +144,20 @@
    47  library: $(FLINT_LIB)
    48  
    49  libflint.dylib: $(FLINTOBJ)
    50 -       $(CC) -single_module -fPIC -dynamiclib -o libflint.dylib $(FLINTOBJ) $(LIBS)
    51 +       $(CPP) -single_module -fPIC -dynamiclib -o libflint.dylib $(FLINTOBJ) $(LIBS)
    52  
    53  libflint.dylib64: $(FLINTOBJ)
    54 -       $(CC) -m64 -single_module -fPIC -dynamiclib -o libflint.dylib $(FLINTOBJ) $(LIBS)
    55 +       $(CPP) -m64 -single_module -fPIC -dynamiclib -o libflint.dylib $(FLINTOBJ) $(LIBS)
    56  
    57  libflint.dll: $(FLINTOBJ)
    58 -       $(CC) -fPIC -shared -o libflint.dll $(FLINTOBJ) $(LIBS)
    59 +       $(CPP) -fPIC -shared -o libflint.dll $(FLINTOBJ) $(LIBS)
    60 +
    61 +# Since this code uses the C++ compiler as a linker to produce
    62 +# a library, the -m64 (or equivalent) option must be provided, as it
    63 +# it is in the line above where the target is libflint.dylib64
    64  
    65  libflint.so: $(FLINTOBJ)
    66 -       $(CC) -fPIC -shared -o libflint.so $(FLINTOBJ) $(LIBS)
    67 +       $(CPP) $(CXXFLAG64) -fPIC -shared -o libflint.so $(FLINTOBJ) $(LIBS)
    68  
    69  ##### zn_poly object files
    70  
    71 @@ -345,55 +354,56 @@
    72  ####### test program targets
    73  
    74  mpn_extras-test: mpn_extras-test.o test-support.o $(FLINTOBJ) $(HEADERS)
    75 -       $(CC) $(CFLAGS) mpn_extras-test.o test-support.o -o mpn_extras-test $(FLINTOBJ) $(LIBS)
    76 +       $(CPP) $(CFLAGS) mpn_extras-test.o test-support.o -o mpn_extras-test $(FLINTOBJ) $(LIBS)
    77  
    78  fmpz_poly-test: fmpz_poly-test.o test-support.o $(FLINTOBJ) $(HEADERS)
    79 -       $(CC) $(CFLAGS) fmpz_poly-test.o test-support.o -o fmpz_poly-test $(FLINTOBJ) $(LIBS)
    80 +       $(CPP) $(CFLAGS) fmpz_poly-test.o test-support.o -o fmpz_poly-test $(FLINTOBJ) $(LIBS)
    81  
    82  fmpz-test: fmpz-test.o test-support.o $(FLINTOBJ) $(HEADERS)
    83 -       $(CC) $(CFLAGS) fmpz-test.o test-support.o -o fmpz-test $(FLINTOBJ) $(LIBS)
    84 +       $(CPP) $(CFLAGS) fmpz-test.o test-support.o -o fmpz-test $(FLINTOBJ) $(LIBS)
    85  
    86  F_mpz-test: F_mpz-test.o test-support.o $(FLINTOBJ) $(HEADERS)
    87 -       $(CC) $(CFLAGS) F_mpz-test.o test-support.o -o F_mpz-test $(FLINTOBJ) $(LIBS)
    88 +       $(CPP) $(CFLAGS) F_mpz-test.o test-support.o -o F_mpz-test $(FLINTOBJ) $(LIBS)
    89  
    90  ZmodF-test: ZmodF-test.o test-support.o $(FLINTOBJ) $(HEADERS)
    91 -       $(CC) $(CFLAGS) ZmodF-test.o test-support.o -o ZmodF-test $(FLINTOBJ) $(LIBS)
    92 +       $(CPP) $(CFLAGS) ZmodF-test.o test-support.o -o ZmodF-test $(FLINTOBJ) $(LIBS)
    93  
    94  ZmodF_poly-test: ZmodF_poly-test.o test-support.o $(FLINTOBJ) $(HEADERS)
    95 -       $(CC) $(CFLAGS) ZmodF_poly-test.o test-support.o -o ZmodF_poly-test $(FLINTOBJ) $(LIBS)
    96 +       $(CPP) $(CFLAGS) ZmodF_poly-test.o test-support.o -o ZmodF_poly-test $(FLINTOBJ) $(LIBS)
    97  
    98  mpz_poly-test: mpz_poly-test.o test-support.o $(FLINTOBJ) $(HEADERS)
    99 -       $(CC) $(CFLAGS) mpz_poly-test.o test-support.o -o mpz_poly-test $(FLINTOBJ) $(LIBS)
    100 +       $(CPP) $(CFLAGS) mpz_poly-test.o test-support.o -o mpz_poly-test $(FLINTOBJ) $(LIBS)
    101  
    102  F_mpz_mat-test: F_mpz_mat-test.o test-support.o $(FLINTOBJ) $(HEADERS)
    103 -       $(CC) $(CFLAGS) F_mpz_mat-test.o test-support.o -o F_mpz_mat-test $(FLINTOBJ) $(LIBS)
    104 +       $(CPP) $(CFLAGS) F_mpz_mat-test.o test-support.o -o F_mpz_mat-test $(FLINTOBJ) $(LIBS)
    105  
    106  F_mpz_LLL_fast_d-test: F_mpz_LLL_fast_d-test.o test-support.o $(FLINTOBJ) $(HEADERS)
    107 -       $(CC) $(CFLAGS) F_mpz_LLL_fast_d-test.o test-support.o -o F_mpz_LLL_fast_d-test $(FLINTOBJ) $(LIBS)
    108 +       $(CPP) $(CFLAGS) F_mpz_LLL_fast_d-test.o test-support.o -o F_mpz_LLL_fast_d-test $(FLINTOBJ) $(LIBS)
    109        
    110  ZmodF_mul-test: ZmodF_mul-test.o test-support.o $(FLINTOBJ) $(HEADERS)
    111 -       $(CC) $(CFLAGS) ZmodF_mul-test.o test-support.o -o ZmodF_mul-test $(FLINTOBJ) $(LIBS)
    112 +       $(CPP) $(CFLAGS) ZmodF_mul-test.o test-support.o -o ZmodF_mul-test $(FLINTOBJ) $(LIBS)
    113  
    114  long_extras-test: long_extras-test.o test-support.o $(FLINTOBJ)
    115 -       $(CC) $(CFLAGS) long_extras-test.o test-support.o -o long_extras-test $(FLINTOBJ) $(LIBS)
    116 +       $(CPP) $(CFLAGS) long_extras-test.o test-support.o -o long_extras-test $(FLINTOBJ) $(LIBS)
    117  
    118  packed_vec-test: packed_vec-test.o test-support.o $(FLINTOBJ) $(HEADERS)
    119 -       $(CC) $(CFLAGS) packed_vec-test.o test-support.o -o packed_vec-test $(FLINTOBJ) $(LIBS)
    120 +       $(CPP) $(CFLAGS) packed_vec-test.o test-support.o -o packed_vec-test $(FLINTOBJ) $(LIBS)
    121  
    122  zmod_poly-test: zmod_poly-test.o test-support.o $(FLINTOBJ) $(HEADERS)
    123 -       $(CC) $(CFLAGS) zmod_poly-test.o test-support.o -o zmod_poly-test $(FLINTOBJ) $(LIBS)
    124 +       $(CPP) $(CFLAGS) zmod_poly-test.o test-support.o -o zmod_poly-test $(FLINTOBJ) $(LIBS)
    125  
    126  zmod_mat-test: zmod_mat-test.o test-support.o $(FLINTOBJ) $(HEADERS)
    127 -       $(CC) $(CFLAGS) zmod_mat-test.o test-support.o -o zmod_mat-test $(FLINTOBJ) $(LIBS)
    128 +       $(CPP) $(CFLAGS) zmod_mat-test.o test-support.o -o zmod_mat-test $(FLINTOBJ) $(LIBS)
    129  
    130  F_zmod_mat-test: F_zmod_mat-test.o test-support.o $(FLINTOBJ) $(HEADERS)
    131 -       $(CC) $(CFLAGS) F_zmod_mat-test.o test-support.o -o F_zmod_mat-test $(FLINTOBJ) $(LIBS)
    132 +       $(CPP) $(CFLAGS) F_zmod_mat-test.o test-support.o -o F_zmod_mat-test $(FLINTOBJ) $(LIBS)
    133  
    134  F_mpz_poly-test: F_mpz_poly-test.o test-support.o $(FLINTOBJ) $(HEADERS)
    135 -       $(CC) $(CFLAGS) F_mpz_poly-test.o test-support.o -o F_mpz_poly-test $(FLINTOBJ) $(LIBS)
    136 +       $(CPP) $(CFLAGS) F_mpz_poly-test.o test-support.o -o F_mpz_poly-test $(FLINTOBJ) $(LIBS)
    137  
    138 +# NTL interface is linked in the library
    139  NTL-interface-test: NTL-interface.o NTL-interface-test.o test-support.o $(FLINTOBJ) $(HEADERS)
    140 -       $(CPP) $(CFLAGS) NTL-interface-test.o NTL-interface.o test-support.o $(FLINTOBJ) -o NTL-interface-test $(LIBS2)
    141 +       $(CPP) $(CFLAGS) NTL-interface-test.o test-support.o $(FLINTOBJ) -o NTL-interface-test $(LIBS2)
    142  
    143  ####### tuning program object files
    144  
    145 @@ -489,70 +499,70 @@
    146  PROFOBJ = $(FLINTOBJ) profiler.o profiler-main.o
    147  
    148  fmpz_poly-profile: fmpz_poly-profile.o fmpz_poly-profile-tables.o test-support.o $(PROFOBJ)
    149 -       $(CC) $(CFLAGS) -o fmpz_poly-profile fmpz_poly-profile.o fmpz_poly-profile-tables.o test-support.o $(PROFOBJ) $(LIBS)
    150 +       $(CPP) $(CFLAGS) -o fmpz_poly-profile fmpz_poly-profile.o fmpz_poly-profile-tables.o test-support.o $(PROFOBJ) $(LIBS)
    151  
    152  F_mpz_poly-profile: F_mpz_poly-profile.o F_mpz_poly-profile-tables.o test-support.o $(PROFOBJ)
    153 -       $(CC) $(CFLAGS) -o F_mpz_poly-profile F_mpz_poly-profile.o F_mpz_poly-profile-tables.o test-support.o $(PROFOBJ) $(LIBS)
    154 +       $(CPP) $(CFLAGS) -o F_mpz_poly-profile F_mpz_poly-profile.o F_mpz_poly-profile-tables.o test-support.o $(PROFOBJ) $(LIBS)
    155  
    156  mpz_poly-profile: mpz_poly-profile.o mpz_poly-profile-tables.o test-support.o $(PROFOBJ)
    157 -       $(CC) $(CFLAGS) -o mpz_poly-profile mpz_poly-profile.o mpz_poly-profile-tables.o test-support.o $(PROFOBJ) $(LIBS)
    158 +       $(CPP) $(CFLAGS) -o mpz_poly-profile mpz_poly-profile.o mpz_poly-profile-tables.o test-support.o $(PROFOBJ) $(LIBS)
    159  
    160  ZmodF_mul-profile: ZmodF_mul-profile.o ZmodF_mul-profile-tables.o $(PROFOBJ)
    161 -       $(CC) $(CFLAGS) -o ZmodF_mul-profile ZmodF_mul-profile.o ZmodF_mul-profile-tables.o $(PROFOBJ) $(LIBS)
    162 +       $(CPP) $(CFLAGS) -o ZmodF_mul-profile ZmodF_mul-profile.o ZmodF_mul-profile-tables.o $(PROFOBJ) $(LIBS)
    163  
    164  ZmodF_poly-profile: ZmodF_poly-profile.o ZmodF_poly-profile-tables.o $(PROFOBJ)
    165 -       $(CC) $(CFLAGS) -o ZmodF_poly-profile ZmodF_poly-profile.o ZmodF_poly-profile-tables.o $(PROFOBJ) $(LIBS)
    166 +       $(CPP) $(CFLAGS) -o ZmodF_poly-profile ZmodF_poly-profile.o ZmodF_poly-profile-tables.o $(PROFOBJ) $(LIBS)
    167  
    168  
    169  kara-profile: kara-profile.c profiler.o test-support.o $(FLINTOBJ)
    170 -       $(CC) $(CFLAGS) -o kara-profile kara-profile.c profiler.o test-support.o $(FLINTOBJ) $(LIBS)
    171 +       $(CPP) $(CFLAGS) -o kara-profile kara-profile.c profiler.o test-support.o $(FLINTOBJ) $(LIBS)
    172  
    173  NTL-profile: NTL-profile.c test-support.o NTL-profile-tables.o $(PROFOBJ)
    174         $(CPP) $(CFLAGS) -o NTL-profile NTL-profile.c NTL-profile-tables.o test-support.o $(PROFOBJ) $(LIB) -lntl
    175  
    176  zmod_poly-profile: zmod_poly-profile.o zmod_poly-profile-tables.o $(PROFOBJ)
    177 -       $(CC) $(CFLAGS) -o zmod_poly-profile zmod_poly.o zmod_poly-profile.o zmod_poly-profile-tables.o $(PROFOBJ) $(LIBS)
    178 +       $(CPP) $(CFLAGS) -o zmod_poly-profile zmod_poly.o zmod_poly-profile.o zmod_poly-profile-tables.o $(PROFOBJ) $(LIBS)
    179  
    180  bernoulli-profile: bernoulli-profile.o bernoulli-profile-tables.o $(PROFOBJ)
    181 -       $(CC) $(CFLAGS) -o bernoulli-profile zmod_poly.o bernoulli-profile.o bernoulli-profile-tables.o $(PROFOBJ) $(LIBS)
    182 +       $(CPP) $(CFLAGS) -o bernoulli-profile zmod_poly.o bernoulli-profile.o bernoulli-profile-tables.o $(PROFOBJ) $(LIBS)
    183  
    184  ####### example programs
    185  
    186  delta_qexp.o: delta_qexp.c $(HEADERS)
    187 -       $(CC) $(CFLAGS) -c delta_qexp.c -o delta_qexp.o
    188 +       $(CPP) $(CFLAGS) -c delta_qexp.c -o delta_qexp.o
    189  
    190  delta_qexp: delta_qexp.o $(FLINTOBJ)
    191 -       $(CC) $(CFLAGS) -o delta_qexp delta_qexp.o $(FLINTOBJ) $(LIBS)
    192 +       $(CPP) $(CFLAGS) -o delta_qexp delta_qexp.o $(FLINTOBJ) $(LIBS)
    193  
    194  expmod: expmod.c $(FLINTOBJ)
    195 -       $(CC) $(CFLAGS) -o expmod expmod.c $(FLINTOBJ) $(LIBS)
    196 +       $(CPP) $(CFLAGS) -o expmod expmod.c $(FLINTOBJ) $(LIBS)
    197  
    198  BPTJCubes: BPTJCubes.c $(FLINTOBJ)
    199 -       $(CC) $(CFLAGS) -o BPTJCubes BPTJCubes.c $(FLINTOBJ) $(LIBS)
    200 +       $(CPP) $(CFLAGS) -o BPTJCubes BPTJCubes.c $(FLINTOBJ) $(LIBS)
    201  
    202  bernoulli.o: bernoulli.c $(HEADERS)
    203 -       $(CC) $(CFLAGS) -c bernoulli.c -o bernoulli.o
    204 +       $(CPP) $(CFLAGS) -c bernoulli.c -o bernoulli.o
    205  
    206  bernoulli: bernoulli.o $(FLINTOBJ)
    207 -       $(CC) $(CFLAGS) -o bernoulli bernoulli.o $(FLINTOBJ) $(LIBS)
    208 +       $(CPP) $(CFLAGS) -o bernoulli bernoulli.o $(FLINTOBJ) $(LIBS)
    209  
    210  bernoulli_fmpz.o: bernoulli_fmpz.c $(HEADERS)
    211 -       $(CC) $(CFLAGS) -c bernoulli_fmpz.c -o bernoulli_fmpz.o
    212 +       $(CPP) $(CFLAGS) -c bernoulli_fmpz.c -o bernoulli_fmpz.o
    213  
    214  bernoulli_fmpz: bernoulli_fmpz.o $(FLINTOBJ)
    215 -       $(CC) $(CFLAGS) -o bernoulli_fmpz bernoulli_fmpz.o $(FLINTOBJ) $(LIBS)
    216 +       $(CPP) $(CFLAGS) -o bernoulli_fmpz bernoulli_fmpz.o $(FLINTOBJ) $(LIBS)
    217  
    218  bernoulli_zmod.o: bernoulli_zmod.c $(HEADERS)
    219 -       $(CC) $(CFLAGS) -c bernoulli_zmod.c -o bernoulli_zmod.o
    220 +       $(CPP) $(CFLAGS) -c bernoulli_zmod.c -o bernoulli_zmod.o
    221  
    222  bernoulli_zmod: bernoulli_zmod.o $(FLINTOBJ)
    223 -       $(CC) $(CFLAGS) -o bernoulli_zmod bernoulli_zmod.o $(FLINTOBJ) $(LIBS)
    224 +       $(CPP) $(CFLAGS) -o bernoulli_zmod bernoulli_zmod.o $(FLINTOBJ) $(LIBS)
    225  
    226  thetaproduct.o: thetaproduct.c $(HEADERS)
    227 -       $(CC) $(CFLAGS2) $(WITH_ZNPOLY) -c thetaproduct.c -o thetaproduct.o
    228 +       $(CPP) $(CFLAGS2) $(WITH_ZNPOLY) -c thetaproduct.c -o thetaproduct.o
    229  
    230  thetaproduct: thetaproduct.o $(FLINTOBJ)
    231 -       $(CC) $(CFLAGS2) -o thetaproduct thetaproduct.o $(FLINTOBJ) $(LIBS)
    232 +       $(CPP) $(CFLAGS2) -o thetaproduct thetaproduct.o $(FLINTOBJ) $(LIBS)
    233  
    234  ####### Quadratic sieve
    235  
    236 @@ -590,12 +600,12 @@
    237         $(CC) $(CFLAGS) -c QS/mp_factor_base.c -o mp_factor_base.o
    238  
    239  mpQS: QS/mpQS.c QS/mpQS.h QS/tinyQS.h mp_factor_base.o mp_poly.o mp_sieve.o mp_linear_algebra.o mp_lprels.o $(FLINTOBJ)
    240 -       $(CC) $(CFLAGS) -o mpQS QS/mpQS.c mp_factor_base.o mp_poly.o mp_sieve.o mp_linear_algebra.o mp_lprels.o $(FLINTOBJ) $(LIBS)
    241 +       $(CPP) $(CFLAGS) -o mpQS QS/mpQS.c mp_factor_base.o mp_poly.o mp_sieve.o mp_linear_algebra.o mp_lprels.o $(FLINTOBJ) $(LIBS)
    242  
    243  ####### Integer multiplication timing
    244  
    245  ZMULOBJ = zn_mod.o misc.o mul_ks.o pack.o mul.o mulmid.o mulmid_ks.o ks_support.o mpn_mulmid.o nuss.o pmf.o pmfvec_fft.o tuning.o mul_fft.o mul_fft_dft.o array.o invert.o zmod_mat.o zmod_poly.o memory-manager.o fmpz.o ZmodF_mul-tuning.o mpz_poly.o mpz_poly-tuning.o fmpz_poly.o ZmodF_poly.o mpz_extras.o profiler.o ZmodF_mul.o ZmodF.o mpn_extras.o F_mpz_mul-timing.o long_extras.o factor_base.o poly.o sieve.o linear_algebra.o block_lanczos.o
    246  
    247  F_mpz_mul-timing: $(FLINTOBJ)
    248 -       $(CC) $(CFLAGS) F_mpz_mul-timing.c profiler.o -o Zmul $(FLINTOBJ) $(LIBS)
    249 +       $(CPP) $(CFLAGS) F_mpz_mul-timing.c profiler.o -o Zmul $(FLINTOBJ) $(LIBS)
    250  

  • deleted file patches/mpn_extras.h.patch 

    diff --git a/patches/mpn_extras.h.patch b/patches/mpn_extras.h.patch
deleted file mode 100644
    + -  
    1 --- src/mpn_extras.h    2009-09-23 03:03:27.000000000 -0700
    2 +++ patches/mpn_extras.h        2011-12-20 15:47:18.495311148 -0800
    3 @@ -22,7 +22,6 @@
    4  #ifndef MPN_EXTRAS_H
    5  #define MPN_EXTRAS_H
    6  
    7 -#include "flint.h"
    8  #include "ZmodF_poly.h"
    9  
    10  #include "longlong_wrapper.h"

  • spkg-check 

    diff --git a/spkg-check b/spkg-check
    a b  
    11#!/usr/bin/env bash
    22
    3 echo "*************************************************"
    4 echo "Running test suite. This should take 6-20 minutes"
    5 echo "   Please report all failures to sage-devel      "
    6 echo "*************************************************"
     3###############################################################################
     4#
     5# FLINT Sage check script
     6#
     7###############################################################################
    78
    8 if [ "`uname`" = "Linux" -a "`uname -m`" = "x86_64" ]; then
    9    FLINT_TUNE="-mtune=opteron -march=opteron -fPIC -funroll-loops "
    10 elif [ "`uname`" = "Darwin" -a "`uname -m`" = "Power Macintosh" ]; then
    11    FLINT_TUNE=" -fPIC -funroll-loops "
    12 elif [ "`uname -m`" = "ia64" ]; then
    13    # -funroll-loops crashes the build on itanium under GCC-4.2.1, as reported by
    14    # Kate Minola.
    15    FLINT_TUNE=" -fPIC "
    16 else
    17    FLINT_TUNE=" -fPIC -funroll-loops  "
     9if [ "$SAGE_LOCAL" = "" ]; then
     10   echo >&2 "Error: SAGE_LOCAL undefined - exiting..."
     11   echo >&2 "Maybe run 'sage -sh'?"
     12   exit 1
    1813fi
    1914
    20 export FLINT_TUNE
     15cd src
     16$MAKE check
    2117
    22 if [ "x$SAGE64" = xyes ]; then
    23    echo "Building a 64-bit version of the Flint test suite"
    24    FLINT_TUNE=" -fPIC -m64 -funroll-loops"
    25 fi
    26 
    27 FLINT_GMP_INCLUDE_DIR="$SAGE_LOCAL"/include/
    28 FLINT_GMP_LIB_DIR="$SAGE_LOCAL"/lib/
    29 
    30 FLINT_NTL_INCLUDE_DIR="$SAGE_LOCAL"/include
    31 FLINT_NTL_LIB_DIR="$SAGE_LOCAL"/lib/
    32 
    33 # What is QD??
    34 FLINT_QD_LIB_DIR="$SAGE_LOCAL"/include
    35 FLINT_QD_INCLUDE_DIR="$SAGE_LOCAL"/include
    36 
    37 export FLINT_GMP_INCLUDE_DIR
    38 export FLINT_GMP_LIB_DIR
    39 export FLINT_QD_INCLUDE_DIR
    40 export FLINT_QD_LIB_DIR
    41 export FLINT_NTL_INCLUDE_DIR
    42 export FLINT_NTL_LIB_DIR
    43 
    44 ###
    45 FLINT_LINK_OPTIONS=""
    46 export FLINT_LINK_OPTIONS
    47 
    48 cd src
    49 
    50 make test
    5118if [ $? -ne 0 ]; then
    52     echo "Error building the test suite for FLINT"
     19    echo >&2 "Error: FLINT failed to pass its test suite."
    5320    exit 1
    5421fi
    55 
    56 for i in {mpn_extras-test,ZmodF-test,ZmodF_mul-test,ZmodF_poly-test,fmpz-test,fmpz_poly-test,mpz_poly-test,long_extras-test,zmod_poly-test,zmod_mat-test,NTL-interface-test}; do
    57         ./$i
    58         if [ $? -ne 0 ]; then
    59             echo "FLINT test failed: $i"
    60             exit 1
    61         fi
    62 done

  • spkg-install 

    diff --git a/spkg-install b/spkg-install
    a b  
    11#!/usr/bin/env bash
    22
     3###############################################################################
     4#
     5# FLINT Sage install script
     6#
     7###############################################################################
     8
    39if [ "$SAGE_LOCAL" = "" ]; then
    4    echo "SAGE_LOCAL undefined ... exiting";
    5    echo "Maybe run 'sage -sh'?"
     10   echo >&2 "Error: SAGE_LOCAL undefined - exiting..."
     11   echo >&2 "Maybe run 'sage -sh'?"
    612   exit 1
    713fi
    814
    9 if [ $UNAME = "CYGWIN" ]; then
    10    # we'll move the libntl.a temporarily out of the way and move it back at the
    11    # end of this spkg-install script
    12    mv $SAGE_LOCAL/lib/libntl.a $SAGE_LOCAL/lib/xxx_libntl.a
    13 fi
    14 
    15 if [ "`uname`" = "Linux" -a "`uname -m`" = "x86_64" ]; then
    16    # This line causes *MAJOR* Illegal Instruction problems on
    17    # 64-bit Pentium 4's.  Do *not* do that!!  Only enable the
    18    # opteron stuff with a surefire way of detecting that a
    19    # machine is really an opteron.
    20    #FLINT_TUNE="-mtune=opteron -march=opteron -fPIC -funroll-loops "
    21 
    22    FLINT_TUNE="-fPIC -funroll-loops "
    23 elif [ "`uname`" = "Darwin" -a "`uname -m`" = "Power Macintosh" ]; then
    24    FLINT_TUNE=" -fPIC -funroll-loops "
    25 elif [ "`uname -m`" = "ia64" ]; then 
    26    # -funroll-loops crashes the build on itanium under GCC-4.2.1, as reported by
    27    # Kate Minola.
    28    echo "Turning off loop unrolling on Linux/Itanium"
    29    FLINT_TUNE=" -fPIC "
    30 elif [ "`uname`" = "SunOS" -a "`uname -p`" = "sparc" ]; then
    31    # -funroll-loops crashes the build on an US IIIi under GCC-4.3.2, as reported by
    32    # Michael Abshoff
    33    echo "Turning off loop unrolling on Solaris/Sparc"
    34    FLINT_TUNE=" -fPIC "
    35 else
    36    FLINT_TUNE=" -fPIC -funroll-loops  "
     15if [ "$SAGE64" = "yes" ]; then
     16    echo "Building a 64-bit version of FLINT."
     17    ABI="64"; export ABI
    3718fi
    3819
    39 if [ -z "$CFLAG64" ] ; then
    40     CFLAG64=-m64
    41 fi
    42 
    43 if [ -z "$CXXFLAG64" ] ; then
    44     CXXFLAG64=-m64
     20if [ "$SAGE_DEBUG" = "yes" ]; then
     21    echo "Building a debug version of FLINT."
     22    CFLAGS="-O0 -g $CFLAGS"; export CFLAGS
     23    FLINT_TUNE=" $FLINT_TUNE"; export FLINT_TUNE
    4524fi
    4625
    47 
    48 if [ "x$SAGE64" = xyes ]; then
    49    FLINT_TUNE="$FLINT_TUNE $CFLAG64"
    50    export CXXFLAG64
     26if [ "$UNAME" = "CYGWIN" ]; then
     27    echo "Only building a shared version of FLINT on Cygwin."
     28    FLINT_CONFIGURE="--disable-static $FLINT_CONFIGURE"
    5129fi
    5230
    53 export FLINT_TUNE
     31cd src
    5432
    55 FLINT_GMP_INCLUDE_DIR="$SAGE_LOCAL"/include/
    56 FLINT_GMP_LIB_DIR="$SAGE_LOCAL"/lib/
    57 
    58 FLINT_NTL_INCLUDE_DIR="$SAGE_LOCAL"/include
    59 FLINT_NTL_LIB_DIR="$SAGE_LOCAL"/lib/
    60 
    61 # What is QD?? possibly quad double?
    62 FLINT_QD_LIB_DIR="$SAGE_LOCAL"/include
    63 FLINT_QD_INCLUDE_DIR="$SAGE_LOCAL"/include
    64 
    65 export FLINT_GMP_INCLUDE_DIR
    66 export FLINT_GMP_LIB_DIR
    67 export FLINT_QD_INCLUDE_DIR
    68 export FLINT_QD_LIB_DIR
    69 export FLINT_NTL_INCLUDE_DIR
    70 export FLINT_NTL_LIB_DIR
    71 
    72 ###
    73 FLINT_LINK_OPTIONS=""
    74 export FLINT_LINK_OPTIONS
    75 
    76 # Apply all patches
    77 if [ $UNAME = "CYGWIN" ]; then
    78     PATCH_FLAG=--binary
    79 fi
    80 cd src
    81 echo "Patching Flint"
    82 for p in ../patches/*.patch; do 
    83     patch $PATCH_FLAG -p1 <"$p"
     33echo "Patching FLINT."
     34for patch in ../patches/*.patch; do
     35    [ -f "$patch" ] || continue
     36    patch -p1 <"$patch"
    8437    if [ $? -ne 0 ]; then
    85         echo "Applying patch $p failed"
     38        echo >&2 "Error applying '$patch'"
    8639        exit 1
    8740    fi
    88 done 
     41done
    8942
    90 # UNIX
    91 if [ $UNAME != "Darwin" ]; then
    92     $MAKE libflint.so
    93     if [ $? -ne 0 ]; then
    94         if [ $UNAME = "CYGWIN" ]; then
    95            # let's move libntl.a back
    96            mv $SAGE_LOCAL/lib/xxx_libntl.a $SAGE_LOCAL/lib/libntl.a
    97         fi
    98         echo "Error building flint shared library."
    99         exit 1
    100     fi
    101     if [ $UNAME = "CYGWIN" ]; then
    102        # let's move libntl.a back
    103        mv $SAGE_LOCAL/lib/xxx_libntl.a $SAGE_LOCAL/lib/libntl.a
    104        # make both kinds of dynamic libraries available for Windows
    105        cp -p libflint.so libflint.dll
    106     fi
    107     echo "Deleting old FLINT"
    108     rm -f $SAGE_LOCAL/lib/libflint*
    109     echo "Installing new library file"
    110     $CP -p libflint* "$SAGE_LOCAL/lib/"
    111 fi
     43echo "Configuring FLINT."
     44./configure --prefix="$SAGE_LOCAL" --with-mpir="$SAGE_LOCAL" \
     45    --with-mpfr="$SAGE_LOCAL" --with-ntl="$SAGE_LOCAL" $FLINT_CONFIGURE
     46if [ $? -ne 0 ]; then
     47    echo >&2 "Error: Failed to configure FLINT."
     48    exit 1
     49fi
    11250
    113 # OS X
    114 if [ $UNAME = "Darwin" ]; then
    115     if [ "$SAGE64" = "yes" ]; then
    116        $MAKE libflint.dylib64
    117     else
    118        $MAKE libflint.dylib
    119     fi
    120     if [ ! -f libflint.dylib ]; then
    121         echo "Failed to build FLINT dylib."
    122         exit 1
    123     fi
    124     echo "Deleting old FLINT"
    125     rm -f $SAGE_LOCAL/lib/libflint*
    126     echo "Installing new library file"
    127     $CP libflint.dylib "$SAGE_LOCAL/lib/"
    128 fi
     51echo "Building FLINT shared library."
     52$MAKE
     53if [ $? -ne 0 ]; then
     54    echo >&2 "Error: Failed to build FLINT shared library."
     55    exit 1
     56fi
    12957
     58echo "Deleting old FLINT files."
     59rm -f $SAGE_LOCAL/lib/libflint*
     60rm -rf $SAGE_LOCAL/include/flint
    13061
    131 # Copy the header files
    132 
    133 rm -rf "$SAGE_LOCAL"/include/FLINT
    134 
    135 for i in {FLINT/,FLINT/zn_poly/src/}; do
    136         mkdir -p "$SAGE_LOCAL"/include/$i
    137         if [ $? -ne 0 ]; then
    138             echo "Error building FLINT"
    139             exit 1
    140         fi
    141 
    142         $CP ${i/FLINT\//}*.h "$SAGE_LOCAL"/include/$i
    143         if [ $? -ne 0 ]; then
    144             echo "Error building FLINT"
    145             exit 1
    146         fi
    147 done
     62echo "Installing new FLINT files."
     63$MAKE install
     64if [ $? -ne 0 ]; then
     65    echo >&2 "Error: Failed to install FLINT."
     66    exit 1
     67fi