Ticket #10508: atlas-3.10.0.p1.ARMv7.qemu.log

File atlas-3.10.0.p1.ARMv7.qemu.log, 12.7 KB (added by Snark, 8 years ago)

Log of compilation of atlas-3.10.0.p1 with SAGE_ATLAS_ARCH=ARMv7 in a qemu vm

Line 
1Found package atlas-3.10.0.p1 in spkg/standard/atlas-3.10.0.p1.spkg
2atlas-3.10.0.p1
3====================================================
4Extracting package /home/jpuydt/sage-5.5.rc1/spkg/standard/atlas-3.10.0.p1.spkg
5-rw-r--r-- 1 jpuydt jpuydt 10037519 Dec 21 15:02 /home/jpuydt/sage-5.5.rc1/spkg/standard/atlas-3.10.0.p1.spkg
6Finished extraction
7****************************************************
8Host system:
9Linux noether 3.2.0-1-686-pae #1 SMP Sun Feb 5 23:52:49 UTC 2012 armv7l GNU/Linux
10****************************************************
11C compiler: gcc
12C compiler version:
13Using built-in specs.
14COLLECT_GCC=/usr/bin/gcc
15COLLECT_LTO_WRAPPER=/usr/lib/gcc/arm-linux-gnueabihf/4.6/lto-wrapper
16Target: arm-linux-gnueabihf
17Configured with: ../src/configure -v --with-pkgversion='Debian 4.6.3-14' --with-bugurl=file:///usr/share/doc/gcc-4.6/README.Bugs --enable-languages=c,c++,fortran,objc,obj-c++ --prefix=/usr --program-suffix=-4.6 --enable-shared --enable-linker-build-id --with-system-zlib --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --with-gxx-include-dir=/usr/include/c++/4.6 --libdir=/usr/lib --enable-nls --with-sysroot=/ --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-gnu-unique-object --enable-plugin --enable-objc-gc --disable-sjlj-exceptions --with-arch=armv7-a --with-fpu=vfpv3-d16 --with-float=hard --with-mode=thumb --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf
18Thread model: posix
19gcc version 4.6.3 (Debian 4.6.3-14)
20****************************************************
21Configuration:
22    SAGE_LOCAL: /home/jpuydt/sage-5.5.rc1/local
23    linker_Solaris?: False
24    OS_X_Lion?: False
25    PPC?: False
26    linker_Darwin?: False
27    Linux?: True
28    SPKG_DIR: /home/jpuydt/sage-5.5.rc1/spkg/build/atlas-3.10.0.p1
29    linker_GNU?: True
30    ld: GNU
31    system: Linux
32    Darwin?: False
33    machine: armv7l
34    fortran: gfortran
35    Solaris?: False
36    fortran_g95?: False
37    bits: 32bit
38    CYGWIN?: False
39    SPARC?: False
40    fortran_GNU?: True
41    FreeBSD?: False
42    32bit?: True
43    IA64?: False
44    generic_binary?: False
45    64bit?: False
46    release: 3.2.0-1-686-pae
47    Intel?: False
48    processor:
49Running patch -p0 --input /home/jpuydt/sage-5.5.rc1/spkg/build/atlas-3.10.0.p1/patches/long_filenames.patch
50patching file src/bin/extract.c
51Running patch -p0 --input /home/jpuydt/sage-5.5.rc1/spkg/build/atlas-3.10.0.p1/patches/solaris_test.patch
52patching file src/configure
53Running patch -p0 --input /home/jpuydt/sage-5.5.rc1/spkg/build/atlas-3.10.0.p1/patches/Makefile.patch
54patching file src/CONFIG/src/Makefile
55Running patch -p0 --input /home/jpuydt/sage-5.5.rc1/spkg/build/atlas-3.10.0.p1/patches/fix_missing_return.patch
56patching file src/tune/sysinfo/matime.c
57Running patch -p0 --input /home/jpuydt/sage-5.5.rc1/spkg/build/atlas-3.10.0.p1/patches/archinfo_linux.c.patch
58patching file src/CONFIG/src/backend/archinfo_linux.c
59Running patch -p0 --input /home/jpuydt/sage-5.5.rc1/spkg/build/atlas-3.10.0.p1/patches/probe_comp.c.patch
60patching file src/CONFIG/src/probe_comp.c
61Building using specific architecture.
62Running configure with arch = ARMv7, isa extensions [], archdef dir None
63Running ../src/configure --prefix=/home/jpuydt/sage-5.5.rc1/local --with-netlib-lapack-tarfile=/home/jpuydt/sage-5.5.rc1/spkg/build/atlas-3.10.0.p1/lapack-3.4.1.tar --cc="gcc" -Si latune 0 -Fa alg -fPIC -C if "/home/jpuydt/sage-5.5.rc1/local/bin/sage_fortran" -C acg "/usr/bin/gcc" -b 32 -O 1 -A 46 -V 0
64make[3]: Entering directory `/home/jpuydt/sage-5.5.rc1/spkg/build/atlas-3.10.0.p1/ATLAS-build'
65gcc -I/home/jpuydt/sage-5.5.rc1/spkg/build/atlas-3.10.0.p1/ATLAS-build/../src//CONFIG/include  -g -w -c /home/jpuydt/sage-5.5.rc1/spkg/build/atlas-3.10.0.p1/ATLAS-build/../src//CONFIG/src/atlconf_misc.c
66gcc -I/home/jpuydt/sage-5.5.rc1/spkg/build/atlas-3.10.0.p1/ATLAS-build/../src//CONFIG/include  -g -w -o xconfig /home/jpuydt/sage-5.5.rc1/spkg/build/atlas-3.10.0.p1/ATLAS-build/../src//CONFIG/src/config.c atlconf_misc.o
67make[3]: Leaving directory `/home/jpuydt/sage-5.5.rc1/spkg/build/atlas-3.10.0.p1/ATLAS-build'
68./xconfig -d s /home/jpuydt/sage-5.5.rc1/spkg/build/atlas-3.10.0.p1/ATLAS-build/../src/ -d b /home/jpuydt/sage-5.5.rc1/spkg/build/atlas-3.10.0.p1/ATLAS-build  -Si lapackref 1 -Si latune 0 -Fa alg -fPIC -C if /home/jpuydt/sage-5.5.rc1/local/bin/sage_fortran -C acg /usr/bin/gcc -b 32 -O 1 -A 46 -V 0
69make[4]: warning: -jN forced in submake: disabling jobserver mode.
70make[4]: warning: -jN forced in submake: disabling jobserver mode.
71make[4]: warning: -jN forced in submake: disabling jobserver mode.
72make[4]: warning: -jN forced in submake: disabling jobserver mode.
73make[4]: warning: -jN forced in submake: disabling jobserver mode.
74make[4]: warning: -jN forced in submake: disabling jobserver mode.
75It appears you have cpu throttling enabled, which makes timings
76unreliable and an ATLAS install nonsensical.  Aborting.
77See ATLAS/INSTALL.txt for further information
78Ignoring CPU throttling by user override!
79
80make[3]: Entering directory `/home/jpuydt/sage-5.5.rc1/spkg/build/atlas-3.10.0.p1/ATLAS-build'
81gcc -I/home/jpuydt/sage-5.5.rc1/spkg/build/atlas-3.10.0.p1/ATLAS-build/../src//CONFIG/include  -g -w -o xisgcc /home/jpuydt/sage-5.5.rc1/spkg/build/atlas-3.10.0.p1/ATLAS-build/../src//CONFIG/src/IsGcc.c atlconf_misc.o
82gcc -I/home/jpuydt/sage-5.5.rc1/spkg/build/atlas-3.10.0.p1/ATLAS-build/../src//CONFIG/include  -g -w -c /home/jpuydt/sage-5.5.rc1/spkg/build/atlas-3.10.0.p1/ATLAS-build/../src//CONFIG/src/probe_comp.c
83gcc -I/home/jpuydt/sage-5.5.rc1/spkg/build/atlas-3.10.0.p1/ATLAS-build/../src//CONFIG/include  -g -w -o xprobe_comp probe_comp.o atlconf_misc.o
84rm -f config1.out
85make -j1 atlas_run atldir=/home/jpuydt/sage-5.5.rc1/spkg/build/atlas-3.10.0.p1/ATLAS-build exe=xprobe_comp redir=config1.out \
86                args="-v 0 -o atlconf.txt -O 1 -A 46 -Si nof77 0 -V 1024  -C ic '/usr/bin/gcc' -Fa ic '-fPIC' -C sm '/usr/bin/gcc' -Fa sm '-fPIC' -C dm '/usr/bin/gcc' -Fa dm '-fPIC' -C sk '/usr/bin/gcc' -Fa sk '-fPIC' -C dk '/usr/bin/gcc' -Fa dk '-fPIC' -C xc '/usr/bin/gcc' -Fa xc '-fPIC' -C gc '/usr/bin/gcc' -Fa gc '-fPIC' -C if '/home/jpuydt/sage-5.5.rc1/local/bin/sage_fortran' -Fa if '-fPIC' -b 32 -d b /home/jpuydt/sage-5.5.rc1/spkg/build/atlas-3.10.0.p1/ATLAS-build"
87make[4]: Entering directory `/home/jpuydt/sage-5.5.rc1/spkg/build/atlas-3.10.0.p1/ATLAS-build'
88make[4]: warning: -jN forced in submake: disabling jobserver mode.
89cd /home/jpuydt/sage-5.5.rc1/spkg/build/atlas-3.10.0.p1/ATLAS-build ; ./xprobe_comp -v 0 -o atlconf.txt -O 1 -A 46 -Si nof77 0 -V 1024  -C ic '/usr/bin/gcc' -Fa ic '-fPIC' -C sm '/usr/bin/gcc' -Fa sm '-fPIC' -C dm '/usr/bin/gcc' -Fa dm '-fPIC' -C sk '/usr/bin/gcc' -Fa sk '-fPIC' -C dk '/usr/bin/gcc' -Fa dk '-fPIC' -C xc '/usr/bin/gcc' -Fa xc '-fPIC' -C gc '/usr/bin/gcc' -Fa gc '-fPIC' -C if '/home/jpuydt/sage-5.5.rc1/local/bin/sage_fortran' -Fa if '-fPIC' -b 32 -d b /home/jpuydt/sage-5.5.rc1/spkg/build/atlas-3.10.0.p1/ATLAS-build > config1.out
90/usr/bin/ld: error: xctest uses VFP register arguments, /tmp/ccZXPvWa.o does not
91/usr/bin/ld: failed to merge target specific data of file /tmp/ccZXPvWa.o
92collect2: ld returned 1 exit status
93make[5]: *** [IRunCComp] Error 1
94
95
96Unable to find usable compiler for ICC; abortingMake sure compilers are in your path, and specify good compilers to configure
97(see INSTALL.txt or 'configure --help' for details)make[4]: *** [atlas_run] Error 1
98make[4]: Leaving directory `/home/jpuydt/sage-5.5.rc1/spkg/build/atlas-3.10.0.p1/ATLAS-build'
99make[3]: *** [IRun_comp] Error 2
100make[3]: Leaving directory `/home/jpuydt/sage-5.5.rc1/spkg/build/atlas-3.10.0.p1/ATLAS-build'
101ERROR 512 IN SYSCMND: 'make IRun_comp args="-v 0 -o atlconf.txt -O 1 -A 46 -Si nof77 0 -V 1024  -C ic '/usr/bin/gcc' -Fa ic '-fPIC' -C sm '/usr/bin/gcc' -Fa sm '-fPIC' -C dm '/usr/bin/gcc' -Fa dm '-fPIC' -C sk '/usr/bin/gcc' -Fa sk '-fPIC' -C dk '/usr/bin/gcc' -Fa dk '-fPIC' -C xc '/usr/bin/gcc' -Fa xc '-fPIC' -C gc '/usr/bin/gcc' -Fa gc '-fPIC' -C if '/home/jpuydt/sage-5.5.rc1/local/bin/sage_fortran' -Fa if '-fPIC' -b 32"'
102
103Assembly configured as GAS_ARM (7)
104
105Vector ISA Extension configured as  NEON (10,1024)
106
107Clock rate configured as 800Mhz
108
109Maximum number of threads configured as  2
110Parallel make command configured as '$(MAKE) -j 2'
111CPU Throttling apparently enabled!
112make[3]: Entering directory `/home/jpuydt/sage-5.5.rc1/spkg/build/atlas-3.10.0.p1/ATLAS-build'
113mkdir src bin tune interfaces
114cd src ; mkdir testing auxil blas lapack pthreads threads
115cd src/blas ; \
116           mkdir f77reference reference gemv ger gemm kbmm \
117                 level1 level2 level3 pklevel3
118cd src/blas/reference ; mkdir level1 level2 level3
119cd src/blas/level2 ; mkdir kernel
120cd src/blas/pklevel3 ; mkdir gpmm sprk
121cd src/blas/level3 ; mkdir rblas kernel
122cd src/pthreads ; mkdir blas misc
123cd src/pthreads/blas ; mkdir level1 level2 level3
124cd src/threads ; mkdir blas lapack
125cd src/threads/blas ; mkdir level3 level2
126cd tune ; mkdir blas sysinfo lapack threads
127cd tune/blas ; mkdir gemm gemv ger level1 level3
128cd interfaces ; mkdir blas lapack
129cd interfaces/lapack ; mkdir C F77
130cd interfaces/lapack/C ; mkdir src testing
131cd interfaces/lapack/F77 ; mkdir src testing
132cd interfaces/blas ; mkdir C F77
133cd interfaces/blas/C ; mkdir src testing
134cd interfaces/blas/F77 ; mkdir src testing
135cd interfaces/lapack ; mkdir C2F
136cd interfaces/lapack/C2F ; mkdir src
137mkdir ARCHS
138make[3]: Leaving directory `/home/jpuydt/sage-5.5.rc1/spkg/build/atlas-3.10.0.p1/ATLAS-build'
139make[3]: Entering directory `/home/jpuydt/sage-5.5.rc1/spkg/build/atlas-3.10.0.p1/ATLAS-build'
140make -j1 -f Make.top startup
141make[4]: Entering directory `/home/jpuydt/sage-5.5.rc1/spkg/build/atlas-3.10.0.p1/ATLAS-build'
142Make.top:1: Make.inc: No such file or directory
143Make.top:325: warning: overriding commands for target `/AtlasTest'
144Make.top:76: warning: ignoring old commands for target `/AtlasTest'
145make[4]: warning: -jN forced in submake: disabling jobserver mode.
146make[4]: *** No rule to make target `Make.inc'.  Stop.
147make[4]: Leaving directory `/home/jpuydt/sage-5.5.rc1/spkg/build/atlas-3.10.0.p1/ATLAS-build'
148make[3]: *** [startup] Error 2
149make[3]: Leaving directory `/home/jpuydt/sage-5.5.rc1/spkg/build/atlas-3.10.0.p1/ATLAS-build'
150/bin/mv: cannot stat 'lib/Makefile': No such file or directory
151../src/configure: 450: ../src/configure: cannot create lib/Makefile: Directory nonexistent
152../src/configure: 451: ../src/configure: cannot create lib/Makefile: Directory nonexistent
153../src/configure: 452: ../src/configure: cannot create lib/Makefile: Directory nonexistent
154../src/configure: 453: ../src/configure: cannot create lib/Makefile: Directory nonexistent
155../src/configure: 509: ../src/configure: cannot create lib/Makefile: Directory nonexistent
156DONE configure
157Finished configuring ATLAS.
158Running make -j1
159make[3]: Entering directory `/home/jpuydt/sage-5.5.rc1/spkg/build/atlas-3.10.0.p1/ATLAS-build'
160make[3]: warning: -jN forced in submake: disabling jobserver mode.
161make -j1 -f Make.top build
162make[4]: Entering directory `/home/jpuydt/sage-5.5.rc1/spkg/build/atlas-3.10.0.p1/ATLAS-build'
163Make.top:1: Make.inc: No such file or directory
164Make.top:325: warning: overriding commands for target `/AtlasTest'
165Make.top:76: warning: ignoring old commands for target `/AtlasTest'
166make[4]: *** No rule to make target `Make.inc'.  Stop.
167make[4]: Leaving directory `/home/jpuydt/sage-5.5.rc1/spkg/build/atlas-3.10.0.p1/ATLAS-build'
168make[3]: *** [build] Error 2
169make[3]: Leaving directory `/home/jpuydt/sage-5.5.rc1/spkg/build/atlas-3.10.0.p1/ATLAS-build'
170------------------------------------------------------------
171  File "./spkg-install", line 508, in <module>
172    assert_success(rc, bad='Failed to build ATLAS.', good='Finished building ATLAS core.')
173  File "./spkg-install", line 76, in assert_success
174    traceback.print_stack(file=sys.stdout)
175------------------------------------------------------------
176Error:  Failed to build ATLAS.
177
178real    1m21.442s
179user    1m14.913s
180sys     0m3.264s
181************************************************************************
182Error installing package atlas-3.10.0.p1
183************************************************************************
184Please email sage-devel (http://groups.google.com/group/sage-devel)
185explaining the problem and including the relevant part of the log file
186  /home/jpuydt/sage-5.5.rc1/spkg/logs/atlas-3.10.0.p1.log
187Describe your computer, operating system, etc.
188If you want to try to fix the problem yourself, *don't* just cd to
189/home/jpuydt/sage-5.5.rc1/spkg/build/atlas-3.10.0.p1 and type 'make' or whatever is appropriate.
190Instead, the following commands setup all environment variables
191correctly and load a subshell for you to debug the error:
192  (cd '/home/jpuydt/sage-5.5.rc1/spkg/build/atlas-3.10.0.p1' && '/home/jpuydt/sage-5.5.rc1/sage' -sh)
193When you are done debugging, you can type "exit" to leave the subshell.
194************************************************************************