1 | Found package atlas-3.10.0.p1 in spkg/standard/atlas-3.10.0.p1.spkg |
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2 | atlas-3.10.0.p1 |
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3 | ==================================================== |
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4 | Extracting package /home/jpuydt/sage-5.5.rc1/spkg/standard/atlas-3.10.0.p1.spkg |
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5 | -rw-r--r-- 1 jpuydt jpuydt 10037519 Dec 21 15:02 /home/jpuydt/sage-5.5.rc1/spkg/standard/atlas-3.10.0.p1.spkg |
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6 | Finished extraction |
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7 | **************************************************** |
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8 | Host system: |
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9 | Linux noether 3.2.0-1-686-pae #1 SMP Sun Feb 5 23:52:49 UTC 2012 armv7l GNU/Linux |
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10 | **************************************************** |
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11 | C compiler: gcc |
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12 | C compiler version: |
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13 | Using built-in specs. |
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14 | COLLECT_GCC=/usr/bin/gcc |
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15 | COLLECT_LTO_WRAPPER=/usr/lib/gcc/arm-linux-gnueabihf/4.6/lto-wrapper |
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16 | Target: arm-linux-gnueabihf |
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17 | Configured with: ../src/configure -v --with-pkgversion='Debian 4.6.3-14' --with-bugurl=file:///usr/share/doc/gcc-4.6/README.Bugs --enable-languages=c,c++,fortran,objc,obj-c++ --prefix=/usr --program-suffix=-4.6 --enable-shared --enable-linker-build-id --with-system-zlib --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --with-gxx-include-dir=/usr/include/c++/4.6 --libdir=/usr/lib --enable-nls --with-sysroot=/ --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --enable-gnu-unique-object --enable-plugin --enable-objc-gc --disable-sjlj-exceptions --with-arch=armv7-a --with-fpu=vfpv3-d16 --with-float=hard --with-mode=thumb --enable-checking=release --build=arm-linux-gnueabihf --host=arm-linux-gnueabihf --target=arm-linux-gnueabihf |
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18 | Thread model: posix |
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19 | gcc version 4.6.3 (Debian 4.6.3-14) |
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20 | **************************************************** |
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21 | Configuration: |
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22 | SAGE_LOCAL: /home/jpuydt/sage-5.5.rc1/local |
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23 | linker_Solaris?: False |
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24 | OS_X_Lion?: False |
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25 | PPC?: False |
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26 | linker_Darwin?: False |
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27 | Linux?: True |
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28 | SPKG_DIR: /home/jpuydt/sage-5.5.rc1/spkg/build/atlas-3.10.0.p1 |
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29 | linker_GNU?: True |
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30 | ld: GNU |
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31 | system: Linux |
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32 | Darwin?: False |
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33 | machine: armv7l |
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34 | fortran: gfortran |
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35 | Solaris?: False |
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36 | fortran_g95?: False |
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37 | bits: 32bit |
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38 | CYGWIN?: False |
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39 | SPARC?: False |
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40 | fortran_GNU?: True |
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41 | FreeBSD?: False |
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42 | 32bit?: True |
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43 | IA64?: False |
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44 | generic_binary?: False |
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45 | 64bit?: False |
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46 | release: 3.2.0-1-686-pae |
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47 | Intel?: False |
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48 | processor: |
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49 | Running patch -p0 --input /home/jpuydt/sage-5.5.rc1/spkg/build/atlas-3.10.0.p1/patches/long_filenames.patch |
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50 | patching file src/bin/extract.c |
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51 | Running patch -p0 --input /home/jpuydt/sage-5.5.rc1/spkg/build/atlas-3.10.0.p1/patches/solaris_test.patch |
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52 | patching file src/configure |
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53 | Running patch -p0 --input /home/jpuydt/sage-5.5.rc1/spkg/build/atlas-3.10.0.p1/patches/Makefile.patch |
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54 | patching file src/CONFIG/src/Makefile |
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55 | Running patch -p0 --input /home/jpuydt/sage-5.5.rc1/spkg/build/atlas-3.10.0.p1/patches/fix_missing_return.patch |
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56 | patching file src/tune/sysinfo/matime.c |
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57 | Running patch -p0 --input /home/jpuydt/sage-5.5.rc1/spkg/build/atlas-3.10.0.p1/patches/archinfo_linux.c.patch |
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58 | patching file src/CONFIG/src/backend/archinfo_linux.c |
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59 | Running patch -p0 --input /home/jpuydt/sage-5.5.rc1/spkg/build/atlas-3.10.0.p1/patches/probe_comp.c.patch |
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60 | patching file src/CONFIG/src/probe_comp.c |
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61 | Building using specific architecture. |
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62 | Running configure with arch = ARMv7, isa extensions [], archdef dir None |
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63 | Running ../src/configure --prefix=/home/jpuydt/sage-5.5.rc1/local --with-netlib-lapack-tarfile=/home/jpuydt/sage-5.5.rc1/spkg/build/atlas-3.10.0.p1/lapack-3.4.1.tar --cc="gcc" -Si latune 0 -Fa alg -fPIC -C if "/home/jpuydt/sage-5.5.rc1/local/bin/sage_fortran" -C acg "/usr/bin/gcc" -b 32 -O 1 -A 46 -V 0 |
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64 | make[3]: Entering directory `/home/jpuydt/sage-5.5.rc1/spkg/build/atlas-3.10.0.p1/ATLAS-build' |
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65 | gcc -I/home/jpuydt/sage-5.5.rc1/spkg/build/atlas-3.10.0.p1/ATLAS-build/../src//CONFIG/include -g -w -c /home/jpuydt/sage-5.5.rc1/spkg/build/atlas-3.10.0.p1/ATLAS-build/../src//CONFIG/src/atlconf_misc.c |
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66 | gcc -I/home/jpuydt/sage-5.5.rc1/spkg/build/atlas-3.10.0.p1/ATLAS-build/../src//CONFIG/include -g -w -o xconfig /home/jpuydt/sage-5.5.rc1/spkg/build/atlas-3.10.0.p1/ATLAS-build/../src//CONFIG/src/config.c atlconf_misc.o |
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67 | make[3]: Leaving directory `/home/jpuydt/sage-5.5.rc1/spkg/build/atlas-3.10.0.p1/ATLAS-build' |
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68 | ./xconfig -d s /home/jpuydt/sage-5.5.rc1/spkg/build/atlas-3.10.0.p1/ATLAS-build/../src/ -d b /home/jpuydt/sage-5.5.rc1/spkg/build/atlas-3.10.0.p1/ATLAS-build -Si lapackref 1 -Si latune 0 -Fa alg -fPIC -C if /home/jpuydt/sage-5.5.rc1/local/bin/sage_fortran -C acg /usr/bin/gcc -b 32 -O 1 -A 46 -V 0 |
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69 | make[4]: warning: -jN forced in submake: disabling jobserver mode. |
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70 | make[4]: warning: -jN forced in submake: disabling jobserver mode. |
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71 | make[4]: warning: -jN forced in submake: disabling jobserver mode. |
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72 | make[4]: warning: -jN forced in submake: disabling jobserver mode. |
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73 | make[4]: warning: -jN forced in submake: disabling jobserver mode. |
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74 | make[4]: warning: -jN forced in submake: disabling jobserver mode. |
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75 | It appears you have cpu throttling enabled, which makes timings |
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76 | unreliable and an ATLAS install nonsensical. Aborting. |
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77 | See ATLAS/INSTALL.txt for further information |
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78 | Ignoring CPU throttling by user override! |
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79 | |
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80 | make[3]: Entering directory `/home/jpuydt/sage-5.5.rc1/spkg/build/atlas-3.10.0.p1/ATLAS-build' |
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81 | gcc -I/home/jpuydt/sage-5.5.rc1/spkg/build/atlas-3.10.0.p1/ATLAS-build/../src//CONFIG/include -g -w -o xisgcc /home/jpuydt/sage-5.5.rc1/spkg/build/atlas-3.10.0.p1/ATLAS-build/../src//CONFIG/src/IsGcc.c atlconf_misc.o |
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82 | gcc -I/home/jpuydt/sage-5.5.rc1/spkg/build/atlas-3.10.0.p1/ATLAS-build/../src//CONFIG/include -g -w -c /home/jpuydt/sage-5.5.rc1/spkg/build/atlas-3.10.0.p1/ATLAS-build/../src//CONFIG/src/probe_comp.c |
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83 | gcc -I/home/jpuydt/sage-5.5.rc1/spkg/build/atlas-3.10.0.p1/ATLAS-build/../src//CONFIG/include -g -w -o xprobe_comp probe_comp.o atlconf_misc.o |
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84 | rm -f config1.out |
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85 | make -j1 atlas_run atldir=/home/jpuydt/sage-5.5.rc1/spkg/build/atlas-3.10.0.p1/ATLAS-build exe=xprobe_comp redir=config1.out \ |
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86 | args="-v 0 -o atlconf.txt -O 1 -A 46 -Si nof77 0 -V 1024 -C ic '/usr/bin/gcc' -Fa ic '-fPIC' -C sm '/usr/bin/gcc' -Fa sm '-fPIC' -C dm '/usr/bin/gcc' -Fa dm '-fPIC' -C sk '/usr/bin/gcc' -Fa sk '-fPIC' -C dk '/usr/bin/gcc' -Fa dk '-fPIC' -C xc '/usr/bin/gcc' -Fa xc '-fPIC' -C gc '/usr/bin/gcc' -Fa gc '-fPIC' -C if '/home/jpuydt/sage-5.5.rc1/local/bin/sage_fortran' -Fa if '-fPIC' -b 32 -d b /home/jpuydt/sage-5.5.rc1/spkg/build/atlas-3.10.0.p1/ATLAS-build" |
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87 | make[4]: Entering directory `/home/jpuydt/sage-5.5.rc1/spkg/build/atlas-3.10.0.p1/ATLAS-build' |
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88 | make[4]: warning: -jN forced in submake: disabling jobserver mode. |
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89 | cd /home/jpuydt/sage-5.5.rc1/spkg/build/atlas-3.10.0.p1/ATLAS-build ; ./xprobe_comp -v 0 -o atlconf.txt -O 1 -A 46 -Si nof77 0 -V 1024 -C ic '/usr/bin/gcc' -Fa ic '-fPIC' -C sm '/usr/bin/gcc' -Fa sm '-fPIC' -C dm '/usr/bin/gcc' -Fa dm '-fPIC' -C sk '/usr/bin/gcc' -Fa sk '-fPIC' -C dk '/usr/bin/gcc' -Fa dk '-fPIC' -C xc '/usr/bin/gcc' -Fa xc '-fPIC' -C gc '/usr/bin/gcc' -Fa gc '-fPIC' -C if '/home/jpuydt/sage-5.5.rc1/local/bin/sage_fortran' -Fa if '-fPIC' -b 32 -d b /home/jpuydt/sage-5.5.rc1/spkg/build/atlas-3.10.0.p1/ATLAS-build > config1.out |
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90 | /usr/bin/ld: error: xctest uses VFP register arguments, /tmp/ccZXPvWa.o does not |
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91 | /usr/bin/ld: failed to merge target specific data of file /tmp/ccZXPvWa.o |
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92 | collect2: ld returned 1 exit status |
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93 | make[5]: *** [IRunCComp] Error 1 |
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94 | |
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95 | |
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96 | Unable to find usable compiler for ICC; abortingMake sure compilers are in your path, and specify good compilers to configure |
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97 | (see INSTALL.txt or 'configure --help' for details)make[4]: *** [atlas_run] Error 1 |
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98 | make[4]: Leaving directory `/home/jpuydt/sage-5.5.rc1/spkg/build/atlas-3.10.0.p1/ATLAS-build' |
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99 | make[3]: *** [IRun_comp] Error 2 |
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100 | make[3]: Leaving directory `/home/jpuydt/sage-5.5.rc1/spkg/build/atlas-3.10.0.p1/ATLAS-build' |
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101 | ERROR 512 IN SYSCMND: 'make IRun_comp args="-v 0 -o atlconf.txt -O 1 -A 46 -Si nof77 0 -V 1024 -C ic '/usr/bin/gcc' -Fa ic '-fPIC' -C sm '/usr/bin/gcc' -Fa sm '-fPIC' -C dm '/usr/bin/gcc' -Fa dm '-fPIC' -C sk '/usr/bin/gcc' -Fa sk '-fPIC' -C dk '/usr/bin/gcc' -Fa dk '-fPIC' -C xc '/usr/bin/gcc' -Fa xc '-fPIC' -C gc '/usr/bin/gcc' -Fa gc '-fPIC' -C if '/home/jpuydt/sage-5.5.rc1/local/bin/sage_fortran' -Fa if '-fPIC' -b 32"' |
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102 | |
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103 | Assembly configured as GAS_ARM (7) |
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104 | |
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105 | Vector ISA Extension configured as NEON (10,1024) |
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106 | |
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107 | Clock rate configured as 800Mhz |
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108 | |
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109 | Maximum number of threads configured as 2 |
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110 | Parallel make command configured as '$(MAKE) -j 2' |
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111 | CPU Throttling apparently enabled! |
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112 | make[3]: Entering directory `/home/jpuydt/sage-5.5.rc1/spkg/build/atlas-3.10.0.p1/ATLAS-build' |
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113 | mkdir src bin tune interfaces |
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114 | cd src ; mkdir testing auxil blas lapack pthreads threads |
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115 | cd src/blas ; \ |
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116 | mkdir f77reference reference gemv ger gemm kbmm \ |
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117 | level1 level2 level3 pklevel3 |
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118 | cd src/blas/reference ; mkdir level1 level2 level3 |
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119 | cd src/blas/level2 ; mkdir kernel |
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120 | cd src/blas/pklevel3 ; mkdir gpmm sprk |
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121 | cd src/blas/level3 ; mkdir rblas kernel |
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122 | cd src/pthreads ; mkdir blas misc |
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123 | cd src/pthreads/blas ; mkdir level1 level2 level3 |
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124 | cd src/threads ; mkdir blas lapack |
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125 | cd src/threads/blas ; mkdir level3 level2 |
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126 | cd tune ; mkdir blas sysinfo lapack threads |
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127 | cd tune/blas ; mkdir gemm gemv ger level1 level3 |
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128 | cd interfaces ; mkdir blas lapack |
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129 | cd interfaces/lapack ; mkdir C F77 |
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130 | cd interfaces/lapack/C ; mkdir src testing |
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131 | cd interfaces/lapack/F77 ; mkdir src testing |
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132 | cd interfaces/blas ; mkdir C F77 |
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133 | cd interfaces/blas/C ; mkdir src testing |
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134 | cd interfaces/blas/F77 ; mkdir src testing |
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135 | cd interfaces/lapack ; mkdir C2F |
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136 | cd interfaces/lapack/C2F ; mkdir src |
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137 | mkdir ARCHS |
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138 | make[3]: Leaving directory `/home/jpuydt/sage-5.5.rc1/spkg/build/atlas-3.10.0.p1/ATLAS-build' |
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139 | make[3]: Entering directory `/home/jpuydt/sage-5.5.rc1/spkg/build/atlas-3.10.0.p1/ATLAS-build' |
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140 | make -j1 -f Make.top startup |
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141 | make[4]: Entering directory `/home/jpuydt/sage-5.5.rc1/spkg/build/atlas-3.10.0.p1/ATLAS-build' |
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142 | Make.top:1: Make.inc: No such file or directory |
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143 | Make.top:325: warning: overriding commands for target `/AtlasTest' |
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144 | Make.top:76: warning: ignoring old commands for target `/AtlasTest' |
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145 | make[4]: warning: -jN forced in submake: disabling jobserver mode. |
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146 | make[4]: *** No rule to make target `Make.inc'. Stop. |
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147 | make[4]: Leaving directory `/home/jpuydt/sage-5.5.rc1/spkg/build/atlas-3.10.0.p1/ATLAS-build' |
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148 | make[3]: *** [startup] Error 2 |
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149 | make[3]: Leaving directory `/home/jpuydt/sage-5.5.rc1/spkg/build/atlas-3.10.0.p1/ATLAS-build' |
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150 | /bin/mv: cannot stat 'lib/Makefile': No such file or directory |
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151 | ../src/configure: 450: ../src/configure: cannot create lib/Makefile: Directory nonexistent |
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152 | ../src/configure: 451: ../src/configure: cannot create lib/Makefile: Directory nonexistent |
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153 | ../src/configure: 452: ../src/configure: cannot create lib/Makefile: Directory nonexistent |
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154 | ../src/configure: 453: ../src/configure: cannot create lib/Makefile: Directory nonexistent |
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155 | ../src/configure: 509: ../src/configure: cannot create lib/Makefile: Directory nonexistent |
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156 | DONE configure |
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157 | Finished configuring ATLAS. |
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158 | Running make -j1 |
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159 | make[3]: Entering directory `/home/jpuydt/sage-5.5.rc1/spkg/build/atlas-3.10.0.p1/ATLAS-build' |
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160 | make[3]: warning: -jN forced in submake: disabling jobserver mode. |
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161 | make -j1 -f Make.top build |
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162 | make[4]: Entering directory `/home/jpuydt/sage-5.5.rc1/spkg/build/atlas-3.10.0.p1/ATLAS-build' |
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163 | Make.top:1: Make.inc: No such file or directory |
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164 | Make.top:325: warning: overriding commands for target `/AtlasTest' |
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165 | Make.top:76: warning: ignoring old commands for target `/AtlasTest' |
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166 | make[4]: *** No rule to make target `Make.inc'. Stop. |
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167 | make[4]: Leaving directory `/home/jpuydt/sage-5.5.rc1/spkg/build/atlas-3.10.0.p1/ATLAS-build' |
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168 | make[3]: *** [build] Error 2 |
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169 | make[3]: Leaving directory `/home/jpuydt/sage-5.5.rc1/spkg/build/atlas-3.10.0.p1/ATLAS-build' |
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170 | ------------------------------------------------------------ |
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171 | File "./spkg-install", line 508, in <module> |
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172 | assert_success(rc, bad='Failed to build ATLAS.', good='Finished building ATLAS core.') |
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173 | File "./spkg-install", line 76, in assert_success |
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174 | traceback.print_stack(file=sys.stdout) |
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175 | ------------------------------------------------------------ |
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176 | Error: Failed to build ATLAS. |
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177 | |
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178 | real 1m21.442s |
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179 | user 1m14.913s |
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180 | sys 0m3.264s |
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181 | ************************************************************************ |
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182 | Error installing package atlas-3.10.0.p1 |
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183 | ************************************************************************ |
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184 | Please email sage-devel (http://groups.google.com/group/sage-devel) |
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185 | explaining the problem and including the relevant part of the log file |
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186 | /home/jpuydt/sage-5.5.rc1/spkg/logs/atlas-3.10.0.p1.log |
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187 | Describe your computer, operating system, etc. |
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188 | If you want to try to fix the problem yourself, *don't* just cd to |
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189 | /home/jpuydt/sage-5.5.rc1/spkg/build/atlas-3.10.0.p1 and type 'make' or whatever is appropriate. |
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190 | Instead, the following commands setup all environment variables |
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191 | correctly and load a subshell for you to debug the error: |
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192 | (cd '/home/jpuydt/sage-5.5.rc1/spkg/build/atlas-3.10.0.p1' && '/home/jpuydt/sage-5.5.rc1/sage' -sh) |
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193 | When you are done debugging, you can type "exit" to leave the subshell. |
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194 | ************************************************************************ |
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